Wall clock time and date at job start Tue Mar 31 2020 13:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34180 * 127.02463 * 2 1 4 4 O 1.34209 * 109.12930 * 180.30082 * 3 2 1 5 5 C 1.33653 * 110.90701 * 359.54872 * 4 3 2 6 6 C 1.36421 * 108.39533 * 0.45017 * 5 4 3 7 7 C 1.47383 * 127.18866 * 179.73402 * 6 5 4 8 8 O 1.21612 * 119.99303 * 174.24615 * 7 6 5 9 9 N 1.34767 * 120.00234 * 354.24615 * 7 6 5 10 10 C 1.47491 * 125.66231 * 185.03319 * 9 7 6 11 11 C 1.55027 * 104.90008 * 204.02400 * 10 9 7 12 12 C 1.54521 * 101.51777 * 323.61804 * 11 10 9 13 13 C 1.47190 * 125.66554 * 4.71728 * 9 7 6 14 14 C 1.52509 * 110.05925 * 153.10050 * 12 11 10 15 15 N 1.47310 * 108.38029 * 72.02490 * 14 12 11 16 16 C 1.36938 * 121.05848 * 229.39771 * 15 14 12 17 17 H 1.08004 * 119.99803 * 150.23954 * 16 15 14 18 18 C 1.38815 * 120.00061 * 330.23170 * 16 15 14 19 19 N 1.31618 * 119.99828 * 350.43435 * 18 16 15 20 20 Si 1.86799 * 120.00081 * 170.43081 * 18 16 15 21 21 H 1.48505 * 109.47121 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47075 * 120.00131 * 20 18 16 23 23 H 1.48496 * 109.47219 * 240.00380 * 20 18 16 24 24 C 1.47159 * 117.88450 * 49.41577 * 15 14 12 25 25 C 1.53287 * 108.53991 * 308.89114 * 24 15 14 26 26 O 1.42073 * 110.33924 * 276.05517 * 12 11 10 27 27 H 1.08998 * 109.46880 * 89.97695 * 1 2 3 28 28 H 1.09003 * 109.46563 * 209.96906 * 1 2 3 29 29 H 1.08992 * 109.47436 * 329.97206 * 1 2 3 30 30 H 1.08005 * 125.43385 * 0.04023 * 3 2 1 31 31 H 1.08000 * 125.80072 * 180.14331 * 5 4 3 32 32 H 1.08999 * 110.35030 * 322.87606 * 10 9 7 33 33 H 1.08995 * 110.35431 * 85.16677 * 10 9 7 34 34 H 1.08993 * 111.01591 * 81.67618 * 11 10 9 35 35 H 1.08997 * 111.01344 * 205.52661 * 11 10 9 36 36 H 1.09001 * 109.91345 * 297.86118 * 13 9 7 37 37 H 1.09005 * 109.90710 * 59.12352 * 13 9 7 38 38 H 1.09001 * 109.68496 * 191.74600 * 14 12 11 39 39 H 1.08999 * 109.68774 * 312.26839 * 14 12 11 40 40 H 0.97002 * 119.99896 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.62361 * 68.60082 * 24 15 14 42 42 H 1.08997 * 109.62814 * 188.98463 * 24 15 14 43 43 H 1.09003 * 109.50976 * 172.80100 * 25 24 15 44 44 H 1.09005 * 109.50881 * 292.95029 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6589 -0.0067 5 6 3.6624 -0.6758 -0.0013 6 6 2.3923 -1.1738 -0.0010 7 6 1.9915 -2.5920 -0.0013 8 8 0.8178 -2.8921 0.1047 9 7 2.9256 -3.5563 -0.1192 10 6 2.6589 -5.0019 -0.2390 11 6 3.9525 -5.6894 0.2683 12 6 5.0403 -4.7257 -0.2567 13 6 4.3812 -3.3410 -0.1562 14 6 6.2779 -4.8001 0.6314 15 7 6.9500 -6.0875 0.3847 16 6 7.3241 -6.8994 1.4220 17 1 7.3578 -7.9701 1.2846 18 6 7.6600 -6.3462 2.6500 19 7 7.8026 -5.0431 2.7679 20 14 7.9098 -7.4513 4.1352 21 1 7.6933 -8.8667 3.7411 22 1 9.2939 -7.2867 4.6475 23 1 6.9412 -7.0792 5.1976 24 6 7.2069 -6.4731 -1.0121 25 6 5.9000 -6.3419 -1.8023 26 8 5.3606 -5.0310 -1.6068 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3632 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 1.9894 2.1011 0.0006 31 1 4.5703 -1.2606 -0.0026 32 1 1.8103 -5.2837 0.3843 33 1 2.4712 -5.2678 -1.2793 34 1 3.9672 -5.7397 1.3570 35 1 4.0648 -6.6817 -0.1684 36 1 4.6454 -2.7377 -1.0247 37 1 4.7062 -2.8431 0.7575 38 1 6.9540 -3.9804 0.3884 39 1 5.9828 -4.7342 1.6787 40 1 8.0377 -4.6566 3.6260 41 1 7.9617 -5.8139 -1.4409 42 1 7.5581 -7.5043 -1.0485 43 1 6.0982 -6.4996 -2.8625 44 1 5.1854 -7.0859 -1.4501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972494641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:34 Heat of formation + Delta-G solvation = -21.985169 kcal Electronic energy + Delta-G solvation = -28188.630679 eV Core-core repulsion = 24302.187126 eV Total energy + Delta-G solvation = -3886.443553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.59992 -40.19516 -38.59811 -36.12590 -34.53541 -33.84929 -31.89536 -31.37687 -30.76288 -29.14589 -27.55113 -27.23565 -25.87779 -24.23238 -23.31224 -21.72912 -21.57980 -20.68493 -19.37114 -18.79755 -17.48358 -17.11454 -16.43912 -16.25003 -16.01289 -15.41832 -15.13399 -14.85394 -14.49295 -14.34095 -13.98580 -13.70654 -13.44102 -13.31687 -13.18237 -12.85798 -12.79426 -12.73477 -12.55965 -12.31174 -12.11430 -11.55405 -11.37402 -11.10438 -10.98505 -10.95650 -10.72663 -10.31417 -10.30849 -10.10074 -9.86468 -9.63863 -9.55128 -9.10296 -8.73417 -8.63693 -8.51347 -6.78338 -5.92941 -3.41054 1.36847 1.98047 2.83966 3.12206 3.28618 3.36973 3.38061 3.41852 4.09795 4.34741 4.47427 4.53870 4.77946 4.82625 5.05297 5.17234 5.26229 5.34281 5.38425 5.41590 5.48334 5.63112 5.64577 5.70032 5.73862 5.77716 5.83793 5.86688 5.95171 6.00023 6.08976 6.25748 6.30564 6.39160 6.41996 6.48557 6.55508 6.71765 6.92795 6.97370 7.34306 7.61780 7.64293 7.81262 8.26705 8.28802 9.03455 9.64315 10.22770 11.15341 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.003804 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.425127 B = 7358.284309 C = 7841.166964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.134 4.134 3 C -0.052 4.052 4 O -0.172 6.172 5 C 0.016 3.984 6 C -0.232 4.232 7 C 0.602 3.398 8 O -0.543 6.543 9 N -0.609 5.609 10 C 0.111 3.889 11 C -0.144 4.144 12 C 0.085 3.915 13 C 0.105 3.895 14 C 0.164 3.836 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.007 3.993 19 N -0.906 5.906 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.377 6.377 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.205 0.795 31 H 0.222 0.778 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.030 0.970 39 H 0.099 0.901 40 H 0.256 0.744 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 7.883 -6.952 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C -0.117 4.117 4 O -0.067 6.067 5 C -0.053 4.053 6 C -0.236 4.236 7 C 0.393 3.607 8 O -0.422 6.422 9 N -0.343 5.343 10 C -0.011 4.011 11 C -0.182 4.182 12 C 0.044 3.956 13 C -0.018 4.018 14 C 0.037 3.963 15 N -0.316 5.316 16 C -0.382 4.382 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.550 5.550 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.215 1.215 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.297 6.297 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.222 0.778 31 H 0.238 0.762 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.281 8.173 -6.877 14.150 hybrid contribution 0.315 -0.807 0.952 1.287 sum -8.966 7.366 -5.924 13.028 Atomic orbital electron populations 1.20226 0.88481 1.03191 1.02371 1.21385 0.97162 0.90367 1.04644 1.23690 0.79965 0.99581 1.08513 1.83817 1.29449 1.22612 1.70823 1.25394 0.99716 0.80835 0.99404 1.21347 0.93361 0.94061 1.14850 1.16829 0.84419 0.83164 0.76297 1.90730 1.17211 1.83064 1.51235 1.48381 1.06422 1.07365 1.72094 1.22293 0.98883 0.78852 1.01025 1.23207 0.92929 0.99596 1.02472 1.22676 0.96616 0.91793 0.84556 1.22229 0.79562 0.98058 1.01923 1.21234 0.88503 0.88171 0.98367 1.44006 1.66974 1.20558 1.00041 1.19205 1.39854 0.89168 0.90015 0.91416 1.25146 0.98939 0.95903 0.99237 1.69935 1.51320 1.09546 1.24217 0.86177 0.77588 0.80013 0.82737 1.20195 1.21523 1.21465 1.21609 0.94092 0.99232 0.86808 1.23121 0.96221 0.84301 0.99537 1.87661 1.83121 1.33360 1.25519 0.91405 0.89857 0.91830 0.77794 0.76237 0.90546 0.91498 0.89455 0.89238 0.90157 0.89386 0.95232 0.88276 0.93429 0.95512 0.91841 0.89841 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.05 36.00 0.36 -0.61 16 2 C -0.13 -1.72 6.37 -102.50 -0.65 -2.37 16 3 C -0.05 -0.55 11.96 29.30 0.35 -0.20 16 4 O -0.17 -2.09 10.52 7.67 0.08 -2.01 16 5 C 0.02 0.21 10.64 30.08 0.32 0.53 16 6 C -0.23 -3.42 6.28 -103.27 -0.65 -4.07 16 7 C 0.60 10.22 7.84 -12.54 -0.10 10.12 16 8 O -0.54 -10.47 15.61 5.27 0.08 -10.39 16 9 N -0.61 -9.80 3.33 -171.94 -0.57 -10.37 16 10 C 0.11 1.75 6.93 -2.43 -0.02 1.73 16 11 C -0.14 -2.41 5.91 -24.86 -0.15 -2.56 16 12 C 0.09 1.50 0.83 -89.72 -0.07 1.43 16 13 C 0.11 1.61 4.38 -3.31 -0.01 1.60 16 14 C 0.16 3.53 3.89 -3.85 -0.01 3.52 16 15 N -0.59 -13.66 2.93 -172.17 -0.51 -14.17 16 16 C -0.25 -6.45 9.65 -15.06 -0.15 -6.59 16 17 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 18 C 0.01 0.17 5.10 -17.43 -0.09 0.08 16 19 N -0.91 -24.53 10.99 55.49 0.61 -23.92 16 20 Si 0.91 20.65 29.56 -169.99 -5.03 15.63 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.11 2.11 6.72 -3.53 -0.02 2.09 16 25 C 0.05 0.76 6.76 37.31 0.25 1.01 16 26 O -0.38 -6.70 10.21 -35.23 -0.36 -7.06 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.12 6.83 -51.93 -0.35 0.77 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.21 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.22 2.46 4.49 -52.49 -0.24 2.23 16 32 H 0.08 1.19 7.99 -51.93 -0.42 0.78 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.58 7.86 -51.93 -0.41 1.17 16 35 H 0.09 1.49 5.98 -51.93 -0.31 1.18 16 36 H 0.08 1.13 6.92 -51.93 -0.36 0.77 16 37 H 0.09 1.28 6.61 -51.93 -0.34 0.94 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 2.39 6.04 -51.93 -0.31 2.07 16 40 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.79 6.13 -51.93 -0.32 0.47 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -30.78 347.70 -7.07 -37.85 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.98 Total: 3.50 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.64 Total: 5.70 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.47 Total: -48.46 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.20 Total: -19.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.78 -7.07 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972494641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.866 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds