Wall clock time and date at job start Tue Mar 31 2020 13:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34180 * 127.02463 * 2 1 4 4 O 1.34209 * 109.12930 * 180.30082 * 3 2 1 5 5 C 1.33653 * 110.90701 * 359.54872 * 4 3 2 6 6 C 1.36421 * 108.39533 * 0.45017 * 5 4 3 7 7 C 1.47383 * 127.18866 * 179.73402 * 6 5 4 8 8 O 1.21612 * 119.99303 * 174.24615 * 7 6 5 9 9 N 1.34767 * 120.00234 * 354.24615 * 7 6 5 10 10 C 1.47491 * 125.66231 * 185.03319 * 9 7 6 11 11 C 1.55027 * 104.90008 * 204.02400 * 10 9 7 12 12 C 1.54521 * 101.51777 * 323.61804 * 11 10 9 13 13 C 1.47190 * 125.66554 * 4.71728 * 9 7 6 14 14 C 1.52509 * 110.05925 * 153.10050 * 12 11 10 15 15 N 1.47310 * 108.38029 * 72.02490 * 14 12 11 16 16 C 1.36938 * 121.05848 * 229.39771 * 15 14 12 17 17 H 1.08004 * 119.99803 * 150.23954 * 16 15 14 18 18 C 1.38815 * 120.00061 * 330.23170 * 16 15 14 19 19 N 1.31618 * 119.99828 * 350.43435 * 18 16 15 20 20 Si 1.86799 * 120.00081 * 170.43081 * 18 16 15 21 21 H 1.48505 * 109.47121 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47075 * 120.00131 * 20 18 16 23 23 H 1.48496 * 109.47219 * 240.00380 * 20 18 16 24 24 C 1.47159 * 117.88450 * 49.41577 * 15 14 12 25 25 C 1.53287 * 108.53991 * 308.89114 * 24 15 14 26 26 O 1.42073 * 110.33924 * 276.05517 * 12 11 10 27 27 H 1.08998 * 109.46880 * 89.97695 * 1 2 3 28 28 H 1.09003 * 109.46563 * 209.96906 * 1 2 3 29 29 H 1.08992 * 109.47436 * 329.97206 * 1 2 3 30 30 H 1.08005 * 125.43385 * 0.04023 * 3 2 1 31 31 H 1.08000 * 125.80072 * 180.14331 * 5 4 3 32 32 H 1.08999 * 110.35030 * 322.87606 * 10 9 7 33 33 H 1.08995 * 110.35431 * 85.16677 * 10 9 7 34 34 H 1.08993 * 111.01591 * 81.67618 * 11 10 9 35 35 H 1.08997 * 111.01344 * 205.52661 * 11 10 9 36 36 H 1.09001 * 109.91345 * 297.86118 * 13 9 7 37 37 H 1.09005 * 109.90710 * 59.12352 * 13 9 7 38 38 H 1.09001 * 109.68496 * 191.74600 * 14 12 11 39 39 H 1.08999 * 109.68774 * 312.26839 * 14 12 11 40 40 H 0.97002 * 119.99896 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.62361 * 68.60082 * 24 15 14 42 42 H 1.08997 * 109.62814 * 188.98463 * 24 15 14 43 43 H 1.09003 * 109.50976 * 172.80100 * 25 24 15 44 44 H 1.09005 * 109.50881 * 292.95029 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6589 -0.0067 5 6 3.6624 -0.6758 -0.0013 6 6 2.3923 -1.1738 -0.0010 7 6 1.9915 -2.5920 -0.0013 8 8 0.8178 -2.8921 0.1047 9 7 2.9256 -3.5563 -0.1192 10 6 2.6589 -5.0019 -0.2390 11 6 3.9525 -5.6894 0.2683 12 6 5.0403 -4.7257 -0.2567 13 6 4.3812 -3.3410 -0.1562 14 6 6.2779 -4.8001 0.6314 15 7 6.9500 -6.0875 0.3847 16 6 7.3241 -6.8994 1.4220 17 1 7.3578 -7.9701 1.2846 18 6 7.6600 -6.3462 2.6500 19 7 7.8026 -5.0431 2.7679 20 14 7.9098 -7.4513 4.1352 21 1 7.6933 -8.8667 3.7411 22 1 9.2939 -7.2867 4.6475 23 1 6.9412 -7.0792 5.1976 24 6 7.2069 -6.4731 -1.0121 25 6 5.9000 -6.3419 -1.8023 26 8 5.3606 -5.0310 -1.6068 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3632 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5142 30 1 1.9894 2.1011 0.0006 31 1 4.5703 -1.2606 -0.0026 32 1 1.8103 -5.2837 0.3843 33 1 2.4712 -5.2678 -1.2793 34 1 3.9672 -5.7397 1.3570 35 1 4.0648 -6.6817 -0.1684 36 1 4.6454 -2.7377 -1.0247 37 1 4.7062 -2.8431 0.7575 38 1 6.9540 -3.9804 0.3884 39 1 5.9828 -4.7342 1.6787 40 1 8.0377 -4.6566 3.6260 41 1 7.9617 -5.8139 -1.4409 42 1 7.5581 -7.5043 -1.0485 43 1 6.0982 -6.4996 -2.8625 44 1 5.1854 -7.0859 -1.4501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972494641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:33 Heat of formation + Delta-G solvation = -41.480756 kcal Electronic energy + Delta-G solvation = -28189.476071 eV Core-core repulsion = 24302.187126 eV Total energy + Delta-G solvation = -3887.288945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.56093 -41.57203 -39.98657 -37.53935 -36.24738 -34.81466 -33.26538 -33.11242 -32.07304 -30.37436 -29.09311 -28.16390 -27.46427 -25.64795 -24.84100 -23.15785 -22.90443 -21.72997 -20.48921 -20.29117 -19.02776 -18.39089 -17.82706 -17.45727 -17.19534 -16.82036 -16.40406 -16.24289 -16.13003 -15.78074 -15.33728 -15.23709 -14.75617 -14.53458 -14.37035 -14.32460 -14.09809 -13.88813 -13.71180 -13.52819 -13.40094 -13.06867 -12.82604 -12.66407 -12.47970 -12.44269 -12.35907 -12.10133 -11.86010 -11.81381 -11.20725 -11.15410 -10.72812 -10.60560 -10.48815 -9.80829 -9.63676 -8.64811 -7.88755 -5.38982 0.29655 1.06203 1.45724 1.49239 1.57375 1.71623 2.10064 2.20261 2.47679 2.73635 3.23713 3.34035 3.38146 3.59820 3.70190 3.79627 3.89414 4.00637 4.18153 4.28360 4.31508 4.35473 4.39195 4.46711 4.49489 4.65193 4.66367 4.78504 4.81577 4.84156 4.91040 5.01406 5.03799 5.05985 5.10009 5.11490 5.18311 5.28834 5.52068 5.55773 5.63684 5.98465 6.32561 6.33035 6.39757 7.00059 7.10691 7.77008 8.31974 9.16907 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.003804 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.425127 B = 7358.284309 C = 7841.166964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.163 4.163 3 C -0.029 4.029 4 O -0.173 6.173 5 C 0.025 3.975 6 C -0.262 4.262 7 C 0.598 3.402 8 O -0.574 6.574 9 N -0.610 5.610 10 C 0.117 3.883 11 C -0.136 4.136 12 C 0.093 3.907 13 C 0.111 3.889 14 C 0.175 3.825 15 N -0.610 5.610 16 C -0.258 4.258 17 H 0.070 0.930 18 C -0.042 4.042 19 N -0.933 5.933 20 Si 0.962 3.038 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.104 3.896 25 C 0.051 3.949 26 O -0.379 6.379 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.250 0.750 31 H 0.231 0.769 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.007 0.993 39 H 0.070 0.930 40 H 0.251 0.749 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 8.625 -8.069 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.165 4.165 3 C -0.095 4.095 4 O -0.068 6.068 5 C -0.046 4.046 6 C -0.267 4.267 7 C 0.390 3.610 8 O -0.456 6.456 9 N -0.343 5.343 10 C -0.005 4.005 11 C -0.174 4.174 12 C 0.052 3.948 13 C -0.011 4.011 14 C 0.048 3.952 15 N -0.334 5.334 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.238 4.238 19 N -0.579 5.579 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.021 4.021 25 C -0.026 4.026 26 O -0.298 6.298 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.266 0.734 31 H 0.247 0.753 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.025 0.975 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.718 8.899 -8.025 15.428 hybrid contribution 0.503 -1.033 1.257 1.703 sum -9.215 7.866 -6.768 13.878 Atomic orbital electron populations 1.20194 0.87772 1.03180 1.02628 1.21690 0.98032 0.90379 1.06372 1.24478 0.78701 1.00844 1.05446 1.83849 1.30405 1.22061 1.70448 1.25487 0.99364 0.81272 0.98451 1.21414 0.94893 0.93421 1.16925 1.17195 0.84029 0.84127 0.75609 1.90705 1.18385 1.83676 1.52842 1.48413 1.06576 1.07461 1.71858 1.22250 0.98059 0.78719 1.01484 1.23073 0.93242 0.99785 1.01288 1.22393 0.94985 0.93457 0.84008 1.22194 0.79007 0.96912 1.03026 1.20965 0.89545 0.87066 0.97581 1.44257 1.67411 1.20582 1.01185 1.19485 1.38763 0.89659 0.90841 0.91269 1.25784 0.99555 0.96933 1.01523 1.70079 1.52718 1.10844 1.24291 0.85277 0.76771 0.79062 0.79779 1.19093 1.22055 1.21937 1.21785 0.95787 0.99400 0.85136 1.23187 0.94430 0.83893 1.01077 1.87675 1.83017 1.34187 1.24933 0.91025 0.92743 0.88888 0.73390 0.75292 0.90678 0.90457 0.91294 0.88796 0.88365 0.88941 0.97484 0.91193 0.93994 0.96239 0.91060 0.86265 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 10.05 71.24 0.72 -1.02 16 2 C -0.16 -3.94 6.37 -18.49 -0.12 -4.06 16 3 C -0.03 -0.54 11.96 66.89 0.80 0.26 16 4 O -0.17 -3.79 10.52 4.52 0.05 -3.74 16 5 C 0.02 0.60 10.64 67.40 0.72 1.31 16 6 C -0.26 -7.55 6.28 -18.99 -0.12 -7.67 16 7 C 0.60 20.30 7.84 86.65 0.68 20.98 16 8 O -0.57 -22.51 15.61 -4.07 -0.06 -22.57 16 9 N -0.61 -19.37 3.33 -816.16 -2.72 -22.09 16 10 C 0.12 3.59 6.93 86.88 0.60 4.19 16 11 C -0.14 -4.50 5.91 31.81 0.19 -4.32 16 12 C 0.09 3.24 0.83 -10.21 -0.01 3.23 16 13 C 0.11 3.34 4.38 86.47 0.38 3.71 16 14 C 0.17 7.67 3.89 86.06 0.34 8.01 16 15 N -0.61 -28.22 2.93 -698.63 -2.05 -30.27 16 16 C -0.26 -13.17 9.65 84.03 0.81 -12.36 16 17 H 0.07 3.45 7.85 -2.91 -0.02 3.43 16 18 C -0.04 -2.21 5.10 84.86 0.43 -1.78 16 19 N -0.93 -51.76 10.99 21.65 0.24 -51.53 16 20 Si 0.96 42.88 29.56 68.60 2.03 44.91 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 C 0.10 3.93 6.72 86.35 0.58 4.51 16 25 C 0.05 1.56 6.76 72.08 0.49 2.05 16 26 O -0.38 -12.74 10.21 -148.98 -1.52 -14.26 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.48 6.83 -2.39 -0.02 1.46 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.25 2.01 8.06 -2.91 -0.02 1.98 16 31 H 0.23 4.88 4.49 -2.91 -0.01 4.86 16 32 H 0.07 2.33 7.99 -2.39 -0.02 2.32 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.54 7.86 -2.39 -0.02 2.52 16 35 H 0.09 3.02 5.98 -2.39 -0.01 3.00 16 36 H 0.10 2.61 6.92 -2.39 -0.02 2.60 16 37 H 0.09 2.69 6.61 -2.38 -0.02 2.68 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.07 3.49 6.04 -2.39 -0.01 3.47 16 40 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 41 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 2.54 7.96 -2.39 -0.02 2.52 16 43 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.06 1.65 6.13 -2.38 -0.01 1.64 16 Total: -1.00 -67.36 347.70 3.47 -63.89 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 1.03 Total: 18.61 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.48 Total: 17.06 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.53 Total: -103.89 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.54 Total: -40.57 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -67.36 3.47 -63.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972494641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.409 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds