Wall clock time and date at job start Tue Mar 31 2020 12:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35131 * 126.44277 * 2 1 4 4 O 1.33931 * 108.76598 * 179.73447 * 3 2 1 5 5 C 1.34914 * 109.38531 * 0.26628 * 4 3 2 6 6 C 1.46660 * 125.98370 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99446 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00023 * 0.02562 * 6 5 4 9 9 C 1.47483 * 125.66545 * 0.03085 * 8 6 5 10 10 C 1.55023 * 104.90182 * 204.02068 * 9 8 6 11 11 C 1.54513 * 101.51705 * 323.62274 * 10 9 8 12 12 C 1.47186 * 125.65841 * 179.71843 * 8 6 5 13 13 C 1.52520 * 110.05643 * 153.09996 * 11 10 9 14 14 N 1.47306 * 108.38305 * 72.02185 * 13 11 10 15 15 C 1.36933 * 121.06128 * 229.39394 * 14 13 11 16 16 H 1.07999 * 120.00308 * 154.19153 * 15 14 13 17 17 C 1.38815 * 119.99716 * 334.19247 * 15 14 13 18 18 N 1.31621 * 119.99671 * 159.50791 * 17 15 14 19 19 Si 1.86801 * 120.00297 * 339.50633 * 17 15 14 20 20 H 1.48498 * 109.46754 * 90.86184 * 19 17 15 21 21 H 1.48491 * 109.47173 * 210.86173 * 19 17 15 22 22 H 1.48503 * 109.46683 * 330.86357 * 19 17 15 23 23 C 1.47160 * 117.87952 * 49.41551 * 14 13 11 24 24 C 1.53278 * 108.54257 * 308.88810 * 23 14 13 25 25 O 1.42064 * 110.33682 * 276.04669 * 11 10 9 26 26 C 1.36542 * 108.02544 * 359.97438 * 5 4 3 27 27 H 1.08997 * 109.47078 * 90.02698 * 1 2 3 28 28 H 1.09004 * 109.47062 * 210.02557 * 1 2 3 29 29 H 1.09003 * 109.47172 * 330.02065 * 1 2 3 30 30 H 1.07998 * 125.61255 * 0.02562 * 3 2 1 31 31 H 1.08997 * 110.35081 * 322.87770 * 9 8 6 32 32 H 1.08995 * 110.35242 * 85.16423 * 9 8 6 33 33 H 1.09002 * 111.01568 * 81.67982 * 10 9 8 34 34 H 1.08998 * 111.01626 * 205.52361 * 10 9 8 35 35 H 1.08999 * 109.91377 * 297.86075 * 12 8 6 36 36 H 1.09007 * 109.91035 * 59.12621 * 12 8 6 37 37 H 1.09006 * 109.68361 * 191.74332 * 13 11 10 38 38 H 1.09003 * 109.68113 * 312.26041 * 13 11 10 39 39 H 0.97005 * 119.99796 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.62806 * 68.60623 * 23 14 13 41 41 H 1.09001 * 109.62416 * 188.97820 * 23 14 13 42 42 H 1.09008 * 109.51359 * 172.80401 * 24 23 14 43 43 H 1.09004 * 109.51304 * 292.94774 * 24 23 14 44 44 H 1.08000 * 126.64741 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 0.0059 5 6 3.6260 -0.6681 0.0038 6 6 4.8379 -1.4941 0.0081 7 8 4.7471 -2.7076 0.0052 8 7 6.0521 -0.9091 0.0153 9 6 6.3066 0.5436 0.0202 10 6 7.7261 0.7016 -0.5826 11 6 8.4441 -0.5415 -0.0111 12 6 7.3441 -1.6140 0.0262 13 6 9.5781 -0.9636 -0.9395 14 7 10.6654 0.0235 -0.8234 15 6 11.2354 0.5810 -1.9366 16 1 11.7004 1.5539 -1.8756 17 6 11.2157 -0.1044 -3.1436 18 7 11.3803 0.5492 -4.2742 19 14 10.9555 -1.9540 -3.1633 20 1 9.5045 -2.2485 -3.2779 21 1 11.6731 -2.5425 -4.3225 22 1 11.4820 -2.5413 -1.9051 23 6 11.1197 0.3911 0.5272 24 6 9.8957 0.7774 1.3650 25 8 8.9276 -0.2743 1.2978 26 6 2.3408 -1.1292 -0.0030 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 1.9770 2.1145 0.0004 31 1 5.5724 1.0592 -0.5987 32 1 6.2824 0.9293 1.0393 33 1 7.6943 0.6684 -1.6716 34 1 8.1982 1.6206 -0.2352 35 1 7.4342 -2.2101 0.9343 36 1 7.4243 -2.2556 -0.8514 37 1 9.9437 -1.9484 -0.6485 38 1 9.2182 -0.9948 -1.9680 39 1 11.3668 0.0702 -5.1176 40 1 11.6250 -0.4582 0.9873 41 1 11.8060 1.2356 0.4654 42 1 10.1970 0.9291 2.4015 43 1 9.4618 1.6973 0.9730 44 1 2.0266 -2.1625 -0.0066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972511845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:04 Heat of formation + Delta-G solvation = -41.086881 kcal Electronic energy + Delta-G solvation = -28003.089339 eV Core-core repulsion = 24115.817474 eV Total energy + Delta-G solvation = -3887.271865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.74563 -41.71650 -40.16654 -37.75771 -36.44253 -35.19565 -33.66133 -33.26937 -31.55540 -31.12692 -29.50872 -28.38280 -27.38918 -25.50056 -24.97801 -23.53882 -22.65248 -22.08118 -20.80579 -20.39422 -19.13410 -18.64592 -17.93410 -17.69147 -17.50847 -17.12981 -16.55644 -16.34269 -16.21214 -15.86487 -15.57465 -15.52859 -14.63996 -14.53293 -14.34041 -14.25545 -14.11229 -13.95264 -13.92419 -13.68866 -13.65178 -13.51422 -13.14937 -12.84175 -12.57363 -12.54928 -12.28777 -12.25220 -11.98838 -11.66376 -11.53798 -11.33423 -11.05611 -10.76220 -10.51404 -10.02371 -9.54062 -8.98681 -8.21326 -5.52813 -0.04208 1.22830 1.31464 1.36233 1.41736 1.44770 1.95838 1.99004 2.34603 2.59057 2.87904 3.18250 3.34322 3.42378 3.68699 3.71522 3.80701 4.03123 4.07532 4.16423 4.28100 4.29886 4.38292 4.41256 4.45304 4.51472 4.56181 4.62439 4.65154 4.73799 4.82515 4.89232 4.89749 4.95444 5.02946 5.04450 5.05821 5.09727 5.21053 5.51329 5.76631 5.84388 6.07693 6.16510 6.24917 6.74469 6.79049 7.52308 7.93917 8.97693 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.003612 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.010796 B = 7750.274572 C = 8101.038375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.205 4.205 3 C 0.006 3.994 4 O -0.164 6.164 5 C -0.100 4.100 6 C 0.610 3.390 7 O -0.563 6.563 8 N -0.607 5.607 9 C 0.113 3.887 10 C -0.140 4.140 11 C 0.104 3.896 12 C 0.125 3.875 13 C 0.109 3.891 14 N -0.617 5.617 15 C -0.239 4.239 16 H 0.067 0.933 17 C -0.026 4.026 18 N -0.949 5.949 19 Si 0.926 3.074 20 H -0.278 1.278 21 H -0.309 1.309 22 H -0.266 1.266 23 C 0.105 3.895 24 C 0.049 3.951 25 O -0.373 6.373 26 C -0.119 4.119 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.253 0.747 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.061 0.939 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.869 3.826 12.641 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.063 4.063 4 O -0.059 6.059 5 C -0.152 4.152 6 C 0.401 3.599 7 O -0.445 6.445 8 N -0.339 5.339 9 C -0.008 4.008 10 C -0.178 4.178 11 C 0.062 3.938 12 C 0.002 3.998 13 C -0.017 4.017 14 N -0.342 5.342 15 C -0.368 4.368 16 H 0.085 0.915 17 C -0.221 4.221 18 N -0.595 5.595 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.238 1.238 22 H -0.191 1.191 23 C -0.020 4.020 24 C -0.028 4.028 25 O -0.291 6.291 26 C -0.140 4.140 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.269 0.731 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.707 3.242 12.657 23.645 hybrid contribution 0.549 -1.139 -0.952 1.583 sum -19.158 2.102 11.706 22.549 Atomic orbital electron populations 1.20259 0.86372 1.03975 1.03135 1.20840 0.99217 0.91467 1.09131 1.25204 0.78891 1.01807 1.00408 1.84167 1.30580 1.20565 1.70627 1.21491 0.95029 0.81483 1.17153 1.16514 0.80828 0.85959 0.76618 1.90840 1.86193 1.13711 1.53730 1.48468 1.04679 1.09404 1.71313 1.22554 0.96766 0.79013 1.02473 1.23136 0.94514 0.99299 1.00888 1.22048 0.92159 0.94927 0.84705 1.21733 0.80742 0.94276 1.03066 1.21761 0.89028 0.92539 0.98324 1.44489 1.37679 1.49366 1.02674 1.18846 1.32038 0.99215 0.86726 0.91508 1.25713 1.00524 1.00615 0.95274 1.69921 1.55567 1.36385 0.97617 0.86265 0.77334 0.84200 0.76589 1.20504 1.23767 1.19092 1.21880 0.96361 0.99613 0.84123 1.23263 0.88153 0.89555 1.01818 1.87726 1.59358 1.56389 1.25674 1.22074 0.90503 1.01520 0.99887 0.90579 0.91237 0.89276 0.73078 0.88485 0.89279 0.91217 0.87948 0.89587 0.90707 0.95157 0.91882 0.92926 0.94648 0.90229 0.85411 0.92047 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 71.24 0.74 -0.02 16 2 C -0.21 -3.32 6.14 -20.06 -0.12 -3.44 16 3 C 0.01 0.09 12.00 67.10 0.81 0.89 16 4 O -0.16 -3.52 7.86 -5.04 -0.04 -3.56 16 5 C -0.10 -2.68 6.93 24.07 0.17 -2.51 16 6 C 0.61 20.10 7.82 86.44 0.68 20.77 16 7 O -0.56 -21.82 17.19 -4.34 -0.07 -21.89 16 8 N -0.61 -19.13 3.33 -816.99 -2.72 -21.85 16 9 C 0.11 3.01 6.17 86.88 0.54 3.55 16 10 C -0.14 -4.42 5.91 31.80 0.19 -4.24 16 11 C 0.10 3.59 0.83 -10.21 -0.01 3.58 16 12 C 0.12 4.21 6.25 86.48 0.54 4.75 16 13 C 0.11 4.64 2.92 86.07 0.25 4.89 16 14 N -0.62 -27.70 2.73 -698.63 -1.91 -29.60 16 15 C -0.24 -12.87 10.10 84.03 0.85 -12.02 16 16 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 17 C -0.03 -1.47 5.25 84.86 0.45 -1.03 16 18 N -0.95 -58.03 13.97 21.65 0.30 -57.73 16 19 Si 0.93 46.37 24.27 68.60 1.67 48.03 16 20 H -0.28 -13.36 6.54 99.48 0.65 -12.71 16 21 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 22 H -0.27 -12.98 6.62 99.48 0.66 -12.32 16 23 C 0.10 3.71 6.72 86.35 0.58 4.29 16 24 C 0.05 1.38 6.76 72.08 0.49 1.87 16 25 O -0.37 -12.03 10.21 -148.97 -1.52 -13.56 16 26 C -0.12 -2.73 10.57 22.39 0.24 -2.49 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.25 1.00 8.06 -2.91 -0.02 0.97 16 31 H 0.10 2.34 6.22 -2.39 -0.01 2.32 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.50 7.86 -2.39 -0.02 2.48 16 34 H 0.10 3.07 5.98 -2.39 -0.01 3.06 16 35 H 0.09 2.84 8.06 -2.39 -0.02 2.82 16 36 H 0.07 2.66 7.79 -2.38 -0.02 2.64 16 37 H 0.03 1.32 6.85 -2.38 -0.02 1.31 16 38 H 0.06 2.95 4.46 -2.39 -0.01 2.94 16 39 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 40 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 2.71 7.96 -2.39 -0.02 2.69 16 42 H 0.13 2.69 8.14 -2.38 -0.02 2.67 16 43 H 0.06 1.68 6.13 -2.39 -0.01 1.66 16 44 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -71.89 347.24 2.99 -68.91 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.91 Total: 12.41 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.37 Total: 18.85 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -4.33 Total: -109.19 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.64 Total: -39.01 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.67 Total: 48.03 kcal Total: -71.89 2.99 -68.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972511845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.819 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds