Wall clock time and date at job start Tue Mar 31 2020 12:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 110.64384 * 2 1 4 4 C 1.34777 * 120.00132 * 298.31322 * 3 2 1 5 5 O 1.21701 * 120.00023 * 359.97438 * 4 3 2 6 6 C 1.46653 * 120.00378 * 179.72368 * 4 3 2 7 7 O 1.35393 * 126.11798 * 0.02562 * 6 4 3 8 8 C 1.34398 * 109.47846 * 179.89829 * 7 6 4 9 9 C 1.33898 * 108.55969 * 359.97438 * 8 7 6 10 10 C 1.35185 * 126.12194 * 179.71082 * 6 4 3 11 11 C 1.50726 * 130.57104 * 0.93945 * 10 6 4 12 12 C 1.53682 * 107.49256 * 163.76379 * 11 10 6 13 13 O 1.42899 * 109.97365 * 48.04929 * 12 11 10 14 14 C 1.43525 * 114.76226 * 287.61503 * 13 12 11 15 15 C 1.55156 * 110.87072 * 123.24854 * 2 1 3 16 16 C 1.54908 * 101.58355 * 153.93321 * 15 2 1 17 17 N 1.47426 * 104.83200 * 322.99097 * 16 15 2 18 18 C 1.36939 * 125.64422 * 204.08918 * 17 16 15 19 19 H 1.08003 * 119.99464 * 169.98108 * 18 17 16 20 20 C 1.38802 * 120.00513 * 349.98552 * 18 17 16 21 21 N 1.31623 * 119.99911 * 350.41633 * 20 18 17 22 22 Si 1.86797 * 120.00325 * 170.42124 * 20 18 17 23 23 H 1.48502 * 109.47264 * 94.13972 * 22 20 18 24 24 H 1.48496 * 109.47313 * 214.13925 * 22 20 18 25 25 H 1.48500 * 109.46875 * 334.13837 * 22 20 18 26 26 C 1.47021 * 108.70427 * 24.12678 * 17 16 15 27 27 H 1.09002 * 109.46738 * 59.29911 * 1 2 3 28 28 H 1.08995 * 109.47241 * 179.29490 * 1 2 3 29 29 H 1.08998 * 109.47112 * 299.30445 * 1 2 3 30 30 H 0.96997 * 120.00042 * 118.30833 * 3 2 1 31 31 H 1.07999 * 125.71613 * 179.97438 * 8 7 6 32 32 H 1.08995 * 110.00392 * 44.17301 * 11 10 6 33 33 H 1.08995 * 109.73948 * 283.20025 * 11 10 6 34 34 H 1.09006 * 109.38902 * 287.89540 * 12 11 10 35 35 H 1.09000 * 109.38852 * 168.20015 * 12 11 10 36 36 H 1.08999 * 109.82289 * 291.95876 * 14 13 12 37 37 H 1.08997 * 109.87441 * 171.06162 * 14 13 12 38 38 H 1.09006 * 111.00539 * 272.01051 * 15 2 1 39 39 H 1.09007 * 111.00236 * 35.86240 * 15 2 1 40 40 H 1.08996 * 110.37081 * 204.15168 * 16 15 2 41 41 H 1.09006 * 110.36492 * 81.82925 * 16 15 2 42 42 H 0.97003 * 120.00028 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.88168 * 239.52732 * 26 17 16 44 44 H 1.09002 * 110.01002 * 118.42918 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7661 2.1967 -1.0276 5 8 1.0841 1.8034 -1.9557 6 6 2.2780 3.5709 -1.0247 7 8 3.0403 4.1366 -0.0593 8 6 3.3215 5.4067 -0.3970 9 6 2.7470 5.6711 -1.5773 10 6 2.0783 4.4978 -1.9883 11 6 1.2997 4.4204 -3.2766 12 6 1.0739 5.8593 -3.7670 13 8 2.3020 6.5884 -3.7229 14 6 2.7501 6.9319 -2.4033 15 6 2.0828 -0.7949 1.2124 16 6 3.4673 -1.2456 0.6837 17 7 3.2470 -1.5463 -0.7426 18 6 4.0077 -2.3902 -1.5070 19 1 3.6747 -2.6713 -2.4952 20 6 5.2066 -2.8844 -1.0119 21 7 5.7063 -2.4008 0.1056 22 14 6.1108 -4.2357 -1.9315 23 1 7.1218 -3.6290 -2.8344 24 1 6.7891 -5.1286 -0.9580 25 1 5.1404 -5.0236 -2.7332 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3633 -1.0275 -0.0126 29 1 -0.3633 0.5030 0.8961 30 1 2.5903 1.6843 0.7396 31 1 3.9118 6.0982 0.1859 32 1 0.3401 3.9332 -3.1037 33 1 1.8701 3.8617 -4.0185 34 1 0.3394 6.3486 -3.1272 35 1 0.7022 5.8383 -4.7915 36 1 2.0743 7.6647 -1.9625 37 1 3.7594 7.3409 -2.4495 38 1 2.1886 -0.1515 2.0860 39 1 1.4514 -1.6547 1.4366 40 1 3.8030 -2.1379 1.2120 41 1 4.1955 -0.4420 0.7940 42 1 6.5439 -2.7464 0.4519 43 1 1.3140 -1.4755 -1.5781 44 1 2.3687 -0.0994 -2.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046512891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:11 Heat of formation + Delta-G solvation = -33.754249 kcal Electronic energy + Delta-G solvation = -27776.619321 eV Core-core repulsion = 23889.665423 eV Total energy + Delta-G solvation = -3886.953898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.91165 -39.79996 -38.71894 -37.31502 -34.18665 -33.58325 -32.32180 -31.85919 -30.23405 -29.05873 -28.65067 -26.42327 -25.71599 -24.29367 -23.53305 -22.88063 -20.55642 -20.19508 -19.81427 -18.96727 -18.10217 -16.87683 -16.62007 -16.36375 -16.10052 -15.58323 -15.39107 -15.08186 -14.65932 -14.44569 -14.22554 -13.76619 -13.64750 -13.49703 -13.03104 -12.81742 -12.79830 -12.33975 -12.24677 -12.05784 -11.73571 -11.72916 -11.60305 -11.08958 -10.98115 -10.79975 -10.49798 -10.41736 -10.18894 -10.07431 -9.98865 -9.69843 -9.57514 -9.51494 -8.86146 -8.57870 -8.55914 -6.76402 -5.72750 -3.04089 1.06931 2.10542 2.64938 3.29481 3.40109 3.41917 3.47342 3.49702 3.57771 4.29110 4.49158 4.52689 4.72427 4.79895 4.99445 5.05606 5.06834 5.13333 5.30931 5.35484 5.47154 5.49699 5.53534 5.65070 5.70880 5.74723 5.85387 5.92995 5.98952 6.11559 6.17407 6.21455 6.28872 6.40520 6.46037 6.65507 6.68189 6.84016 6.90763 7.09289 7.46249 7.54877 7.74424 7.79156 8.26846 8.34275 9.22139 9.83902 10.51292 11.40798 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003449 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.865055 B = 8115.397353 C = 8576.142871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 N -0.695 5.695 4 C 0.603 3.397 5 O -0.514 6.514 6 C -0.055 4.055 7 O -0.166 6.166 8 C 0.011 3.989 9 C -0.240 4.240 10 C -0.090 4.090 11 C -0.086 4.086 12 C 0.063 3.937 13 O -0.379 6.379 14 C 0.137 3.863 15 C -0.148 4.148 16 C 0.173 3.827 17 N -0.603 5.603 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.136 3.864 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.402 0.598 31 H 0.210 0.790 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.025 0.975 42 H 0.252 0.748 43 H 0.032 0.968 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.509 18.531 1.328 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.073 3.927 3 N -0.344 5.344 4 C 0.389 3.611 5 O -0.392 6.392 6 C -0.107 4.107 7 O -0.062 6.062 8 C -0.059 4.059 9 C -0.242 4.242 10 C -0.093 4.093 11 C -0.123 4.123 12 C -0.013 4.013 13 O -0.298 6.298 14 C 0.061 3.939 15 C -0.186 4.186 16 C 0.048 3.952 17 N -0.329 5.329 18 C -0.354 4.354 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.009 3.991 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.237 0.763 31 H 0.227 0.773 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.625 17.974 0.772 20.404 hybrid contribution 0.940 -0.446 0.202 1.060 sum -8.685 17.528 0.974 19.586 Atomic orbital electron populations 1.22042 0.93999 1.02474 1.02292 1.21412 0.93093 0.79863 0.98312 1.45899 1.53052 1.12758 1.22714 1.16448 0.80249 0.81449 0.82998 1.90832 1.38927 1.74334 1.35146 1.21647 1.02548 0.95604 0.90900 1.84336 1.55188 1.24235 1.42416 1.23573 1.01376 0.84093 0.96837 1.20987 1.05698 0.99109 0.98419 1.20147 0.99956 0.92088 0.97135 1.20865 1.00741 0.97873 0.92791 1.22705 0.85769 0.90658 1.02212 1.87984 1.40777 1.74496 1.26528 1.21007 1.00621 0.90838 0.81480 1.23355 1.01119 0.99004 0.95164 1.21407 0.89471 0.99473 0.84824 1.44486 1.30859 1.50797 1.06781 1.19037 0.99558 1.18368 0.98388 0.90652 1.24794 0.96802 1.00668 0.98168 1.69948 1.20567 1.43922 1.22357 0.86129 0.79598 0.81614 0.78602 1.21679 1.21636 1.20574 1.21616 0.90514 0.93135 0.93808 0.90979 0.91478 0.93027 0.76277 0.77322 0.88414 0.89064 0.92915 0.88127 0.91664 0.87692 0.91664 0.90325 0.91078 0.95665 0.93807 0.94996 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.45 37.16 0.31 -1.98 16 2 C 0.16 2.85 0.81 -129.98 -0.11 2.74 16 3 N -0.69 -11.70 5.14 -47.21 -0.24 -11.94 16 4 C 0.60 10.49 7.01 -12.86 -0.09 10.40 16 5 O -0.51 -9.85 12.55 5.19 0.07 -9.78 16 6 C -0.06 -0.86 7.11 -37.27 -0.27 -1.12 16 7 O -0.17 -2.25 10.44 2.34 0.02 -2.22 16 8 C 0.01 0.11 12.06 29.21 0.35 0.46 16 9 C -0.24 -2.77 6.04 -105.02 -0.63 -3.40 16 10 C -0.09 -1.28 6.02 -104.59 -0.63 -1.91 16 11 C -0.09 -1.08 5.71 -27.52 -0.16 -1.24 16 12 C 0.06 0.64 6.75 37.51 0.25 0.89 16 13 O -0.38 -4.36 10.70 -35.23 -0.38 -4.74 16 14 C 0.14 1.26 7.27 36.02 0.26 1.52 16 15 C -0.15 -2.64 6.09 -24.58 -0.15 -2.79 16 16 C 0.17 4.13 5.40 -2.53 -0.01 4.11 16 17 N -0.60 -15.80 3.39 -170.07 -0.58 -16.38 16 18 C -0.23 -6.47 10.24 -15.06 -0.15 -6.63 16 19 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 20 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 21 N -0.92 -27.19 10.68 55.49 0.59 -26.59 16 22 Si 0.91 22.49 29.56 -169.99 -5.03 17.47 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 C 0.14 3.05 6.13 -3.06 -0.02 3.03 16 27 H 0.07 1.18 6.37 -51.93 -0.33 0.85 16 28 H 0.07 0.98 8.12 -51.93 -0.42 0.55 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.40 6.16 8.23 -40.82 -0.34 5.82 16 31 H 0.21 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.10 1.23 7.64 -51.93 -0.40 0.83 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 40 H 0.07 1.88 6.93 -51.93 -0.36 1.52 16 41 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 44 H 0.04 0.86 6.47 -51.93 -0.34 0.53 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -33.92 353.03 -7.69 -41.61 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.34 Total: 3.49 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.13 Total: 3.76 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.23 Total: -54.91 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.29 Total: -16.74 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.92 -7.69 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046512891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.857 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds