Wall clock time and date at job start Tue Mar 31 2020 12:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35126 * 125.61677 * 2 1 4 4 C 1.40367 * 107.11445 * 179.78004 * 3 2 1 5 5 C 1.50694 * 126.64693 * 180.22619 * 4 3 2 6 6 C 1.36545 * 106.70645 * 0.34977 * 4 3 2 7 7 C 1.46654 * 125.98924 * 179.91137 * 6 4 3 8 8 O 1.21701 * 119.99392 * 7.34544 * 7 6 4 9 9 N 1.34775 * 120.00361 * 187.34856 * 7 6 4 10 10 C 1.47118 * 121.05516 * 176.88948 * 9 7 6 11 11 C 1.53223 * 108.73606 * 232.19193 * 10 9 7 12 12 O 1.43101 * 109.34265 * 305.87509 * 11 10 9 13 13 C 1.42485 * 113.98699 * 59.94668 * 12 11 10 14 14 C 1.53445 * 113.81172 * 170.51944 * 13 12 11 15 15 N 1.47666 * 85.98710 * 268.76182 * 14 13 12 16 16 C 1.36941 * 134.46205 * 155.69613 * 15 14 13 17 17 H 1.08007 * 119.99635 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00218 * 0.02562 * 16 15 14 19 19 N 1.31615 * 119.99450 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00097 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46866 * 59.99998 * 20 18 16 22 22 H 1.48495 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47097 * 300.00139 * 20 18 16 24 24 C 1.47674 * 91.07542 * 335.70116 * 15 14 13 25 25 C 1.47335 * 121.05156 * 356.86734 * 9 7 6 26 26 O 1.33929 * 125.61111 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47383 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47200 * 299.98135 * 1 2 3 29 29 H 1.09004 * 109.46525 * 59.97816 * 1 2 3 30 30 H 1.08001 * 126.44287 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47111 * 270.14995 * 5 4 3 32 32 H 1.09004 * 109.47588 * 30.14770 * 5 4 3 33 33 H 1.09003 * 109.47316 * 150.14972 * 5 4 3 34 34 H 1.09001 * 109.59336 * 112.41511 * 10 9 7 35 35 H 1.09003 * 109.59729 * 351.96834 * 10 9 7 36 36 H 1.09003 * 109.49299 * 65.83462 * 11 10 9 37 37 H 1.09001 * 109.49382 * 185.88843 * 11 10 9 38 38 H 1.09004 * 113.79286 * 23.03330 * 14 13 12 39 39 H 1.09009 * 113.79121 * 154.49236 * 14 13 12 40 40 H 0.97001 * 119.99613 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.78682 * 270.02837 * 24 15 14 42 42 H 1.08997 * 113.89968 * 138.57805 * 24 15 14 43 43 H 1.09003 * 109.74183 * 12.01258 * 25 9 7 44 44 H 1.08998 * 109.74195 * 251.29953 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 0.0052 5 6 4.8617 1.5142 0.0119 6 6 3.5823 -0.7117 0.0001 7 6 4.7414 -1.6103 0.0009 8 8 5.8622 -1.1573 0.1412 9 7 4.5653 -2.9375 -0.1538 10 6 5.7152 -3.8525 -0.2244 11 6 5.5778 -4.7195 -1.4803 12 8 4.3007 -5.3650 -1.4732 13 6 3.1966 -4.4645 -1.4576 14 6 1.8393 -5.1445 -1.6813 15 7 2.0567 -4.8732 -3.1165 16 6 1.6018 -5.4364 -4.2788 17 1 1.9207 -5.0404 -5.2317 18 6 0.7309 -6.5164 -4.2324 19 7 0.3428 -6.9992 -3.0711 20 14 0.1098 -7.2843 -5.8179 21 1 1.2619 -7.7862 -6.6092 22 1 -0.7997 -8.4136 -5.4978 23 1 -0.6258 -6.2639 -6.6071 24 6 2.9615 -3.7509 -2.7958 25 6 3.2151 -3.5181 -0.2570 26 8 2.2869 -1.0888 0.0005 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5135 0.8901 29 1 -0.3632 0.5142 -0.8898 30 1 1.9613 2.1260 0.0004 31 1 5.1628 1.7256 -1.0142 32 1 4.6499 2.4503 0.5285 33 1 5.6670 0.9896 0.5261 34 1 5.7302 -4.4896 0.6598 35 1 6.6386 -3.2757 -0.2777 36 1 5.6629 -4.0914 -2.3670 37 1 6.3661 -5.4722 -1.4906 38 1 1.8323 -6.2053 -1.4305 39 1 0.9983 -4.5990 -1.2531 40 1 -0.2660 -7.7537 -3.0386 41 1 2.4542 -2.7910 -2.6991 42 1 3.8468 -3.7024 -3.4297 43 1 2.4829 -2.7238 -0.4028 44 1 2.9821 -4.0721 0.6523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053210224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:35 Heat of formation + Delta-G solvation = 14.747269 kcal Electronic energy + Delta-G solvation = -28392.685409 eV Core-core repulsion = 24507.834694 eV Total energy + Delta-G solvation = -3884.850715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.86112 -40.25580 -38.73761 -36.15764 -34.91295 -33.91707 -32.58056 -32.20106 -30.22400 -28.40941 -28.04255 -26.84027 -25.93961 -25.10113 -23.39023 -22.16314 -21.55453 -20.65840 -19.41280 -18.88198 -17.54105 -16.82319 -16.68464 -16.47276 -15.68106 -15.48520 -15.14343 -14.74277 -14.39117 -14.17447 -14.08893 -13.63814 -13.60110 -13.37053 -13.19959 -13.16740 -13.02787 -12.97256 -12.48916 -12.44071 -12.31807 -11.76156 -11.65639 -11.32944 -11.17507 -10.82169 -10.78805 -10.75998 -10.24929 -10.14211 -9.80388 -9.66372 -9.63914 -9.31137 -8.83596 -8.58148 -8.24157 -6.89332 -5.76097 -3.08003 1.00688 2.23312 2.49269 2.97123 3.16099 3.40803 3.44737 3.45941 4.08793 4.36289 4.44179 4.61392 4.70291 4.91148 5.05249 5.11728 5.18134 5.19657 5.25674 5.28816 5.32229 5.38892 5.45431 5.52979 5.57206 5.63158 5.65674 5.70388 5.82537 5.91865 5.98171 6.05018 6.18643 6.27641 6.37263 6.43424 6.49054 6.50645 6.86013 6.92479 7.16842 7.31599 7.49581 7.81317 7.98247 8.01603 9.04226 9.70745 10.56738 11.41329 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.004267 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.687975 B = 6560.170495 C = 7790.606147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.022 3.978 3 C -0.227 4.227 4 C -0.083 4.083 5 C -0.095 4.095 6 C -0.086 4.086 7 C 0.606 3.394 8 O -0.530 6.530 9 N -0.601 5.601 10 C 0.080 3.920 11 C 0.045 3.955 12 O -0.335 6.335 13 C 0.053 3.947 14 C 0.184 3.816 15 N -0.600 5.600 16 C -0.222 4.222 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.286 1.286 24 C 0.102 3.898 25 C 0.078 3.922 26 O -0.151 6.151 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.153 0.847 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.255 0.745 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.117 0.883 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 14.367 9.567 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 C -0.246 4.246 4 C -0.085 4.085 5 C -0.152 4.152 6 C -0.137 4.137 7 C 0.395 3.605 8 O -0.410 6.410 9 N -0.333 5.333 10 C -0.042 4.042 11 C -0.033 4.033 12 O -0.253 6.253 13 C 0.011 3.989 14 C 0.058 3.942 15 N -0.326 5.326 16 C -0.349 4.349 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.212 1.212 24 C -0.025 4.025 25 C -0.044 4.044 26 O -0.048 6.048 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.171 0.829 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.134 0.866 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.234 13.816 9.433 17.529 hybrid contribution -0.482 0.029 -0.901 1.022 sum 4.752 13.845 8.533 16.943 Atomic orbital electron populations 1.20460 0.84611 1.04966 1.03837 1.22971 0.94519 0.84571 1.00936 1.21403 0.91790 0.99689 1.11759 1.20552 0.96310 0.92028 0.99654 1.20432 0.94055 0.97899 1.02785 1.21693 0.81972 0.93916 1.16149 1.16639 0.86110 0.80884 0.76851 1.90793 1.22754 1.75488 1.51937 1.48111 1.08559 1.05682 1.70939 1.22360 0.89674 0.92442 0.99765 1.22911 0.87533 0.96830 0.95980 1.88047 1.12222 1.30863 1.94136 1.23758 0.91023 0.91549 0.92544 1.22197 0.87242 1.00551 0.84240 1.45703 1.53259 1.31912 1.01715 1.18923 1.22223 1.10078 0.83675 0.90345 1.24745 0.99760 0.98627 0.97019 1.69781 1.37421 1.27001 1.22586 0.86194 0.78428 0.78673 0.82422 1.21085 1.21502 1.21232 1.23022 0.94050 0.92168 0.93219 1.22977 0.83028 0.98533 0.99873 1.84219 1.16001 1.33499 1.71082 0.89779 0.89305 0.89117 0.82910 0.90968 0.91576 0.89379 0.90410 0.88217 0.92789 0.87815 0.89588 0.93916 0.93538 0.94460 0.93735 0.86551 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.41 36.01 0.38 -0.30 16 2 C 0.02 0.26 7.31 -35.41 -0.26 0.00 16 3 C -0.23 -2.58 10.73 -39.89 -0.43 -3.01 16 4 C -0.08 -1.09 6.20 -104.44 -0.65 -1.74 16 5 C -0.10 -1.08 9.90 36.00 0.36 -0.72 16 6 C -0.09 -1.30 6.85 -36.80 -0.25 -1.55 16 7 C 0.61 9.72 7.68 -12.86 -0.10 9.62 16 8 O -0.53 -9.07 14.19 5.19 0.07 -8.99 16 9 N -0.60 -9.32 3.03 -173.99 -0.53 -9.85 16 10 C 0.08 1.10 6.59 -3.59 -0.02 1.08 16 11 C 0.05 0.68 6.88 37.27 0.26 0.94 16 12 O -0.34 -6.64 10.52 -35.23 -0.37 -7.01 16 13 C 0.05 1.04 1.21 -90.30 -0.11 0.93 16 14 C 0.18 4.31 6.90 -3.18 -0.02 4.29 16 15 N -0.60 -15.62 3.70 -180.25 -0.67 -16.29 16 16 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -27.15 11.39 55.49 0.63 -26.51 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.10 2.19 8.08 -3.17 -0.03 2.16 16 25 C 0.08 1.27 5.59 -3.64 -0.02 1.25 16 26 O -0.15 -2.16 7.13 4.99 0.04 -2.13 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.12 6.32 -51.93 -0.33 0.79 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.30 7.08 -51.93 -0.37 0.93 16 36 H 0.05 0.85 7.20 -51.93 -0.37 0.48 16 37 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 2.27 7.17 -51.93 -0.37 1.90 16 39 H 0.04 0.97 8.09 -51.92 -0.42 0.55 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.78 7.94 -51.93 -0.41 0.37 16 42 H 0.04 0.96 7.28 -51.93 -0.38 0.58 16 43 H 0.12 1.88 3.83 -54.14 -0.21 1.67 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -33.48 355.59 -7.85 -41.33 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.21 Total: 0.64 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.15 Total: 6.26 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.56 Total: -52.65 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.26 Total: -18.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.48 -7.85 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053210224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.075 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds