Wall clock time and date at job start Tue Mar 31 2020 12:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35127 * 125.61527 * 2 1 4 4 C 1.40362 * 107.11717 * 179.71101 * 3 2 1 5 5 C 1.36550 * 106.70694 * 0.41359 * 4 3 2 6 6 C 1.46653 * 125.98907 * 179.85407 * 5 4 3 7 7 O 1.21695 * 119.99974 * 359.71019 * 6 5 4 8 8 N 1.34779 * 119.99856 * 179.70885 * 6 5 4 9 9 C 1.46497 * 119.99883 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.08992 * 110.63874 * 307.87772 * 10 9 8 12 12 C 1.55059 * 110.58197 * 184.99868 * 10 9 8 13 13 C 1.55030 * 102.12935 * 204.93083 * 12 10 9 14 14 C 1.53322 * 103.78366 * 20.86698 * 13 12 10 15 15 C 1.52652 * 115.56243 * 133.64213 * 14 13 12 16 16 N 1.47222 * 87.77949 * 90.04529 * 15 14 13 17 17 C 1.36932 * 135.96431 * 206.41651 * 16 15 14 18 18 H 1.08004 * 120.00066 * 6.79093 * 17 16 15 19 19 C 1.38808 * 119.99884 * 186.79269 * 17 16 15 20 20 N 1.31629 * 119.99858 * 172.34298 * 19 17 16 21 21 Si 1.86797 * 120.00274 * 352.34104 * 19 17 16 22 22 H 1.48502 * 109.47471 * 175.35206 * 21 19 17 23 23 H 1.48504 * 109.47042 * 55.35242 * 21 19 17 24 24 H 1.48501 * 109.47081 * 295.35483 * 21 19 17 25 25 C 1.47219 * 88.06699 * 26.66772 * 16 15 14 26 26 O 1.42842 * 108.32807 * 1.60437 * 14 13 12 27 27 O 1.33930 * 125.61781 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47058 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47249 * 300.01369 * 1 2 3 30 30 H 1.09000 * 109.47417 * 60.01712 * 1 2 3 31 31 H 1.08004 * 126.44224 * 359.96872 * 3 2 1 32 32 H 1.07998 * 126.65334 * 180.29973 * 4 3 2 33 33 H 0.96994 * 119.99774 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47350 * 60.00170 * 9 8 6 35 35 H 1.09006 * 109.47215 * 300.00587 * 9 8 6 36 36 H 1.09008 * 110.87007 * 86.77543 * 12 10 9 37 37 H 1.08996 * 110.87404 * 323.09572 * 12 10 9 38 38 H 1.08993 * 110.56812 * 262.29252 * 13 12 10 39 39 H 1.08997 * 110.68568 * 139.49791 * 13 12 10 40 40 H 1.09002 * 113.50148 * 335.31600 * 15 14 13 41 41 H 1.09005 * 113.56183 * 204.78256 * 15 14 13 42 42 H 0.96991 * 120.00047 * 4.89162 * 20 19 17 43 43 H 1.09004 * 113.49685 * 88.06070 * 25 16 15 44 44 H 1.08993 * 113.49991 * 218.60291 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6249 0.6532 0.0068 5 6 3.5823 -0.7116 0.0012 6 6 4.7414 -1.6101 0.0020 7 8 5.8680 -1.1498 0.0029 8 7 4.5590 -2.9454 0.0019 9 6 5.7168 -3.8429 0.0022 10 6 5.2362 -5.2955 0.0014 11 1 4.5205 -5.4638 0.8060 12 6 6.4378 -6.2673 0.1282 13 6 5.8823 -7.5591 -0.5246 14 6 4.7215 -7.0596 -1.3929 15 6 4.6736 -7.6174 -2.8130 16 7 3.8427 -8.7155 -2.2923 17 6 3.5905 -10.0134 -2.6486 18 1 4.1525 -10.4729 -3.4483 19 6 2.6126 -10.7386 -1.9819 20 7 2.2645 -11.9305 -2.4188 21 14 1.7905 -10.0232 -0.4648 22 1 0.7122 -10.9368 -0.0087 23 1 1.2089 -8.6974 -0.7957 24 1 2.7967 -9.8665 0.6160 25 6 3.3968 -7.8053 -1.2246 26 8 4.6536 -5.6375 -1.2771 27 8 2.2869 -1.0887 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5136 -0.8901 31 1 1.9611 2.1260 -0.0005 32 1 4.5112 1.2703 0.0131 33 1 3.6610 -3.3122 0.0009 34 1 6.3186 -3.6595 0.8924 35 1 6.3192 -3.6593 -0.8876 36 1 6.6899 -6.4387 1.1748 37 1 7.2999 -5.8931 -0.4238 38 1 5.5206 -8.2486 0.2381 39 1 6.6435 -8.0369 -1.1412 40 1 5.6446 -7.9454 -3.1841 41 1 4.1491 -6.9717 -3.5173 42 1 2.7396 -12.3321 -3.1629 43 1 2.5252 -7.2099 -1.4970 44 1 3.2900 -8.2918 -0.2552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053567708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:20 Heat of formation + Delta-G solvation = -1.400767 kcal Electronic energy + Delta-G solvation = -26671.433548 eV Core-core repulsion = 22785.882602 eV Total energy + Delta-G solvation = -3885.550946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.99723 -40.35452 -39.51329 -37.02657 -34.87129 -33.56149 -32.42196 -32.32237 -32.02465 -29.79366 -27.84669 -26.75368 -25.55648 -24.05460 -22.34137 -21.90354 -21.54069 -21.30340 -20.38502 -19.19339 -18.55725 -17.50347 -16.87887 -16.68669 -16.08403 -15.92550 -15.73654 -15.10986 -14.77718 -14.65612 -14.21186 -13.75806 -13.60025 -13.44672 -13.42881 -13.29109 -13.20839 -13.08745 -13.01440 -12.38043 -12.31197 -12.09297 -11.61754 -11.46802 -11.29631 -11.10673 -10.72559 -10.51501 -10.42088 -10.36920 -10.33796 -9.89040 -9.41322 -9.25080 -8.90446 -8.84495 -8.77263 -7.19623 -6.36544 -3.27346 0.76368 2.00670 2.30262 2.91895 2.96756 3.35817 3.40639 3.61176 3.77576 4.24390 4.53467 4.55347 4.57569 4.59679 4.65430 4.81471 4.85712 4.92743 4.94622 5.01262 5.09189 5.22485 5.31496 5.34823 5.37318 5.43759 5.52935 5.53442 5.65385 5.75825 5.84999 6.05049 6.08122 6.12452 6.19272 6.19874 6.28084 6.29825 6.34820 6.52587 6.55489 7.03262 7.22261 7.27386 7.83189 8.19432 8.93332 9.45235 10.30884 11.16467 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.002982 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.779600 B = 9386.807337 C =10621.609722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.022 3.978 3 C -0.227 4.227 4 C -0.116 4.116 5 C -0.081 4.081 6 C 0.604 3.396 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.128 3.872 10 C 0.060 3.940 11 H 0.077 0.923 12 C -0.145 4.145 13 C -0.113 4.113 14 C 0.060 3.940 15 C 0.133 3.867 16 N -0.620 5.620 17 C -0.302 4.302 18 H 0.085 0.915 19 C -0.024 4.024 20 N -0.933 5.933 21 Si 1.070 2.930 22 H -0.294 1.294 23 H -0.286 1.286 24 H -0.294 1.294 25 C 0.090 3.910 26 O -0.355 6.355 27 O -0.160 6.160 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.410 0.590 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 24.763 8.537 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.246 4.246 4 C -0.137 4.137 5 C -0.133 4.133 6 C 0.390 3.610 7 O -0.404 6.404 8 N -0.363 5.363 9 C 0.005 3.995 10 C 0.002 3.998 11 H 0.095 0.905 12 C -0.183 4.183 13 C -0.151 4.151 14 C 0.019 3.981 15 C 0.007 3.993 16 N -0.350 5.350 17 C -0.428 4.428 18 H 0.102 0.898 19 C -0.223 4.223 20 N -0.575 5.575 21 Si 0.903 3.097 22 H -0.221 1.221 23 H -0.213 1.213 24 H -0.222 1.222 25 C -0.036 4.036 26 O -0.273 6.273 27 O -0.056 6.056 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.152 24.340 9.422 26.125 hybrid contribution 0.801 0.151 -1.144 1.405 sum 1.953 24.491 8.278 25.926 Atomic orbital electron populations 1.20448 0.84461 1.04776 1.04036 1.22868 0.94377 0.84039 1.01753 1.21580 0.92325 0.99871 1.10811 1.21944 0.98641 0.92890 1.00233 1.22010 0.81919 0.94624 1.14773 1.16512 0.86051 0.81496 0.76926 1.90879 1.22068 1.76220 1.51204 1.45857 1.11213 1.05282 1.73965 1.21528 0.87921 0.86581 1.03483 1.23383 0.95027 0.93186 0.88202 0.90472 1.23145 0.97881 0.95288 1.02002 1.22386 0.96872 0.96833 0.99014 1.23706 0.96286 0.79209 0.98900 1.22363 0.95614 0.88778 0.92562 1.45709 1.52377 1.06967 1.29959 1.20093 1.20177 0.83927 1.18611 0.89778 1.25738 0.96301 0.96892 1.03358 1.70923 1.40198 1.17064 1.29309 0.83697 0.75911 0.74578 0.75523 1.22147 1.21292 1.22246 1.23196 0.95241 0.91286 0.93887 1.88784 1.81545 1.21977 1.35021 1.84035 1.15957 1.35000 1.70657 0.89987 0.89132 0.89071 0.82620 0.82221 0.75420 0.89674 0.89992 0.89967 0.90109 0.90111 0.89861 0.93143 0.93656 0.92853 0.93093 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 36.00 0.37 -0.02 16 2 C 0.02 0.19 7.31 -35.42 -0.26 -0.07 16 3 C -0.23 -1.91 10.77 -39.89 -0.43 -2.34 16 4 C -0.12 -1.20 10.62 -39.39 -0.42 -1.62 16 5 C -0.08 -0.96 7.13 -36.80 -0.26 -1.22 16 6 C 0.60 7.86 7.79 -12.86 -0.10 7.76 16 7 O -0.53 -8.11 16.86 5.19 0.09 -8.02 16 8 N -0.71 -8.29 5.55 -61.62 -0.34 -8.63 16 9 C 0.13 1.42 5.41 -4.04 -0.02 1.40 16 10 C 0.06 0.73 3.38 -25.64 -0.09 0.64 16 11 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 12 C -0.14 -1.63 6.60 -24.57 -0.16 -1.79 16 13 C -0.11 -1.71 6.46 -25.49 -0.16 -1.87 16 14 C 0.06 1.06 1.66 -90.66 -0.15 0.91 16 15 C 0.13 2.72 8.20 -8.03 -0.07 2.66 16 16 N -0.62 -15.32 3.66 -184.61 -0.68 -15.99 16 17 C -0.30 -8.69 11.08 -15.06 -0.17 -8.85 16 18 H 0.08 2.54 8.05 -52.48 -0.42 2.11 16 19 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 20 N -0.93 -29.36 13.70 55.49 0.76 -28.60 16 21 Si 1.07 26.68 25.13 -169.99 -4.27 22.41 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -6.71 6.11 56.52 0.35 -6.36 16 24 H -0.29 -6.84 6.63 56.52 0.37 -6.47 16 25 C 0.09 1.92 5.22 -7.88 -0.04 1.88 16 26 O -0.36 -5.63 11.02 -35.23 -0.39 -6.02 16 27 O -0.16 -1.77 10.40 5.00 0.05 -1.71 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.41 4.46 8.23 -40.82 -0.34 4.12 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 37 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.08 1.28 7.82 -51.93 -0.41 0.87 16 39 H 0.08 1.25 7.81 -51.93 -0.41 0.85 16 40 H 0.05 0.97 7.91 -51.93 -0.41 0.56 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 43 H 0.05 1.11 7.69 -51.93 -0.40 0.71 16 44 H 0.05 1.11 4.50 -51.93 -0.23 0.88 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -34.68 363.77 -7.84 -42.52 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.49 Total: 1.92 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.05 Total: -3.36 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.26 Total: -53.22 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.25 Total: -15.76 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.27 Total: 22.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.68 -7.84 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053567708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.123 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds