Wall clock time and date at job start Tue Mar 31 2020 12:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35127 * 125.61527 * 2 1 4 4 C 1.40362 * 107.11717 * 179.71101 * 3 2 1 5 5 C 1.36550 * 106.70694 * 0.41359 * 4 3 2 6 6 C 1.46653 * 125.98907 * 179.85407 * 5 4 3 7 7 O 1.21695 * 119.99974 * 359.71019 * 6 5 4 8 8 N 1.34779 * 119.99856 * 179.70885 * 6 5 4 9 9 C 1.46497 * 119.99883 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.08992 * 110.63874 * 307.87772 * 10 9 8 12 12 C 1.55059 * 110.58197 * 184.99868 * 10 9 8 13 13 C 1.55030 * 102.12935 * 204.93083 * 12 10 9 14 14 C 1.53322 * 103.78366 * 20.86698 * 13 12 10 15 15 C 1.52652 * 115.56243 * 133.64213 * 14 13 12 16 16 N 1.47222 * 87.77949 * 90.04529 * 15 14 13 17 17 C 1.36932 * 135.96431 * 206.41651 * 16 15 14 18 18 H 1.08004 * 120.00066 * 6.79093 * 17 16 15 19 19 C 1.38808 * 119.99884 * 186.79269 * 17 16 15 20 20 N 1.31629 * 119.99858 * 172.34298 * 19 17 16 21 21 Si 1.86797 * 120.00274 * 352.34104 * 19 17 16 22 22 H 1.48502 * 109.47471 * 175.35206 * 21 19 17 23 23 H 1.48504 * 109.47042 * 55.35242 * 21 19 17 24 24 H 1.48501 * 109.47081 * 295.35483 * 21 19 17 25 25 C 1.47219 * 88.06699 * 26.66772 * 16 15 14 26 26 O 1.42842 * 108.32807 * 1.60437 * 14 13 12 27 27 O 1.33930 * 125.61781 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47058 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47249 * 300.01369 * 1 2 3 30 30 H 1.09000 * 109.47417 * 60.01712 * 1 2 3 31 31 H 1.08004 * 126.44224 * 359.96872 * 3 2 1 32 32 H 1.07998 * 126.65334 * 180.29973 * 4 3 2 33 33 H 0.96994 * 119.99774 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.47350 * 60.00170 * 9 8 6 35 35 H 1.09006 * 109.47215 * 300.00587 * 9 8 6 36 36 H 1.09008 * 110.87007 * 86.77543 * 12 10 9 37 37 H 1.08996 * 110.87404 * 323.09572 * 12 10 9 38 38 H 1.08993 * 110.56812 * 262.29252 * 13 12 10 39 39 H 1.08997 * 110.68568 * 139.49791 * 13 12 10 40 40 H 1.09002 * 113.50148 * 335.31600 * 15 14 13 41 41 H 1.09005 * 113.56183 * 204.78256 * 15 14 13 42 42 H 0.96991 * 120.00047 * 4.89162 * 20 19 17 43 43 H 1.09004 * 113.49685 * 88.06070 * 25 16 15 44 44 H 1.08993 * 113.49991 * 218.60291 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6249 0.6532 0.0068 5 6 3.5823 -0.7116 0.0012 6 6 4.7414 -1.6101 0.0020 7 8 5.8680 -1.1498 0.0029 8 7 4.5590 -2.9454 0.0019 9 6 5.7168 -3.8429 0.0022 10 6 5.2362 -5.2955 0.0014 11 1 4.5205 -5.4638 0.8060 12 6 6.4378 -6.2673 0.1282 13 6 5.8823 -7.5591 -0.5246 14 6 4.7215 -7.0596 -1.3929 15 6 4.6736 -7.6174 -2.8130 16 7 3.8427 -8.7155 -2.2923 17 6 3.5905 -10.0134 -2.6486 18 1 4.1525 -10.4729 -3.4483 19 6 2.6126 -10.7386 -1.9819 20 7 2.2645 -11.9305 -2.4188 21 14 1.7905 -10.0232 -0.4648 22 1 0.7122 -10.9368 -0.0087 23 1 1.2089 -8.6974 -0.7957 24 1 2.7967 -9.8665 0.6160 25 6 3.3968 -7.8053 -1.2246 26 8 4.6536 -5.6375 -1.2771 27 8 2.2869 -1.0887 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5136 -0.8901 31 1 1.9611 2.1260 -0.0005 32 1 4.5112 1.2703 0.0131 33 1 3.6610 -3.3122 0.0009 34 1 6.3186 -3.6595 0.8924 35 1 6.3192 -3.6593 -0.8876 36 1 6.6899 -6.4387 1.1748 37 1 7.2999 -5.8931 -0.4238 38 1 5.5206 -8.2486 0.2381 39 1 6.6435 -8.0369 -1.1412 40 1 5.6446 -7.9454 -3.1841 41 1 4.1491 -6.9717 -3.5173 42 1 2.7396 -12.3321 -3.1629 43 1 2.5252 -7.2099 -1.4970 44 1 3.2900 -8.2918 -0.2552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053567708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:20 Heat of formation + Delta-G solvation = -27.019928 kcal Electronic energy + Delta-G solvation = -26672.544478 eV Core-core repulsion = 22785.882602 eV Total energy + Delta-G solvation = -3886.661876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.72565 -41.68274 -40.54850 -38.45949 -35.92958 -34.53439 -34.24271 -33.21282 -32.92642 -31.04180 -29.20180 -27.82829 -27.24529 -25.20299 -23.42790 -22.95177 -22.62564 -22.39059 -21.20128 -20.80000 -19.54800 -19.42020 -17.88899 -17.53793 -17.49529 -17.06333 -16.66437 -16.32247 -16.16875 -15.84932 -15.50065 -15.13844 -15.02197 -14.57267 -14.28646 -14.13441 -14.05649 -13.96519 -13.77104 -13.58739 -13.53640 -13.22422 -12.81713 -12.74683 -12.69426 -12.42942 -12.30004 -12.04761 -11.74845 -11.53025 -11.40822 -11.34116 -11.06400 -11.04515 -10.36194 -10.34547 -9.47930 -9.26348 -8.69972 -5.52346 -0.03772 1.32277 1.35480 1.45828 1.56089 1.65535 2.04321 2.10914 2.50839 2.55389 2.94807 3.21855 3.38715 3.54947 3.56489 3.63670 3.88716 3.89510 3.93593 4.07936 4.36135 4.38399 4.45261 4.49720 4.55807 4.60164 4.60466 4.66807 4.72562 4.73279 4.78805 4.81203 4.88215 4.93023 4.97922 5.07814 5.10556 5.12834 5.19601 5.24193 5.44704 5.82662 5.89881 5.98899 6.33325 6.64824 6.90681 7.26532 8.20372 8.85972 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.002982 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.779600 B = 9386.807337 C =10621.609722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.023 3.977 3 C -0.231 4.231 4 C -0.118 4.118 5 C -0.114 4.114 6 C 0.603 3.397 7 O -0.558 6.558 8 N -0.709 5.709 9 C 0.132 3.868 10 C 0.058 3.942 11 H 0.092 0.908 12 C -0.131 4.131 13 C -0.117 4.117 14 C 0.085 3.915 15 C 0.126 3.874 16 N -0.648 5.648 17 C -0.291 4.291 18 H 0.053 0.947 19 C -0.082 4.082 20 N -0.968 5.968 21 Si 1.107 2.893 22 H -0.302 1.302 23 H -0.265 1.265 24 H -0.266 1.266 25 C 0.082 3.918 26 O -0.365 6.365 27 O -0.174 6.174 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.414 0.586 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.247 0.753 43 H 0.049 0.951 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 27.605 10.612 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.249 4.249 4 C -0.138 4.138 5 C -0.166 4.166 6 C 0.391 3.609 7 O -0.440 6.440 8 N -0.359 5.359 9 C 0.009 3.991 10 C 0.001 3.999 11 H 0.109 0.891 12 C -0.169 4.169 13 C -0.155 4.155 14 C 0.044 3.956 15 C 0.000 4.000 16 N -0.378 5.378 17 C -0.418 4.418 18 H 0.071 0.929 19 C -0.274 4.274 20 N -0.613 5.613 21 Si 0.932 3.068 22 H -0.230 1.230 23 H -0.190 1.190 24 H -0.192 1.192 25 C -0.043 4.043 26 O -0.283 6.283 27 O -0.070 6.070 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.202 0.798 32 H 0.182 0.818 33 H 0.250 0.750 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.009 27.221 11.489 29.564 hybrid contribution 0.847 -0.614 -1.891 2.161 sum 1.856 26.607 9.599 28.346 Atomic orbital electron populations 1.20671 0.81759 1.05347 1.05894 1.23703 0.95869 0.83557 0.99830 1.21930 0.91266 1.01273 1.10480 1.22238 0.99923 0.92620 0.99060 1.21879 0.82151 0.94957 1.17576 1.16662 0.86059 0.81866 0.76346 1.90846 1.23302 1.76789 1.53019 1.45861 1.11594 1.05053 1.73374 1.21539 0.87750 0.85798 1.03990 1.23623 0.95700 0.93828 0.86752 0.89064 1.23146 0.97553 0.92509 1.03710 1.22418 0.95827 0.98602 0.98605 1.23205 0.95142 0.80339 0.96885 1.22537 0.95166 0.87654 0.94626 1.45727 1.53534 1.06635 1.31912 1.19952 1.18871 0.86000 1.16942 0.92871 1.27082 0.97530 0.96754 1.06048 1.71027 1.41613 1.18655 1.29977 0.83292 0.75641 0.74663 0.73176 1.23037 1.19049 1.19183 1.23366 0.97192 0.90969 0.92818 1.88774 1.82010 1.20275 1.37270 1.84020 1.15794 1.36127 1.71104 0.90078 0.86971 0.87293 0.79808 0.81750 0.75006 0.87742 0.90920 0.86966 0.88781 0.90588 0.90027 0.92368 0.93709 0.94357 0.93332 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.41 71.23 0.74 0.19 16 2 C 0.02 0.35 7.31 24.97 0.18 0.53 16 3 C -0.23 -3.36 10.77 22.07 0.24 -3.13 16 4 C -0.12 -2.31 10.62 22.39 0.24 -2.07 16 5 C -0.11 -2.62 7.13 24.07 0.17 -2.45 16 6 C 0.60 15.29 7.79 86.44 0.67 15.96 16 7 O -0.56 -17.02 16.86 -4.33 -0.07 -17.09 16 8 N -0.71 -15.41 5.55 -467.09 -2.59 -18.00 16 9 C 0.13 2.60 5.41 86.38 0.47 3.07 16 10 C 0.06 1.21 3.38 31.30 0.11 1.32 16 11 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 12 C -0.13 -2.43 6.60 31.99 0.21 -2.22 16 13 C -0.12 -3.20 6.46 31.40 0.20 -2.99 16 14 C 0.09 2.86 1.66 -10.82 -0.02 2.85 16 15 C 0.13 5.04 8.20 83.40 0.68 5.72 16 16 N -0.65 -31.83 3.66 -739.09 -2.70 -34.53 16 17 C -0.29 -17.07 11.08 84.03 0.93 -16.14 16 18 H 0.05 3.36 8.05 -2.91 -0.02 3.34 16 19 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 20 N -0.97 -62.80 13.70 21.65 0.30 -62.50 16 21 Si 1.11 53.27 25.13 68.60 1.72 55.00 16 22 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 23 H -0.27 -11.72 6.11 99.48 0.61 -11.11 16 24 H -0.27 -11.44 6.63 99.48 0.66 -10.78 16 25 C 0.08 3.35 5.22 83.50 0.44 3.79 16 26 O -0.37 -10.68 11.02 -148.98 -1.64 -12.32 16 27 O -0.17 -3.62 10.40 -5.04 -0.05 -3.67 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.41 8.35 8.23 -92.71 -0.76 7.58 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.09 1.54 8.05 -2.39 -0.02 1.52 16 38 H 0.08 2.18 7.82 -2.39 -0.02 2.16 16 39 H 0.08 2.27 7.81 -2.39 -0.02 2.25 16 40 H 0.06 2.21 7.91 -2.39 -0.02 2.20 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.25 16.10 8.73 -92.72 -0.81 15.29 16 43 H 0.05 2.03 7.69 -2.38 -0.02 2.01 16 44 H 0.06 2.23 4.50 -2.39 -0.01 2.22 16 Total: -1.00 -77.57 363.77 0.76 -76.81 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.07 Total: 16.36 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.73 Total: -0.05 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.00 Total: -115.03 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.77 Total: -33.08 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 1.72 Total: 55.00 kcal Total: -77.57 0.76 -76.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053567708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.787 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds