Wall clock time and date at job start Tue Mar 31 2020 12:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34176 * 125.43631 * 2 1 4 4 C 1.47021 * 105.95206 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19287 * 179.97438 * 4 3 2 6 6 O 1.21619 * 120.00087 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00061 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99725 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46647 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.36971 * 57.81596 * 9 8 7 11 11 C 1.54555 * 110.32138 * 179.97438 * 9 8 7 12 12 C 1.54774 * 104.07821 * 142.48979 * 11 9 8 13 13 C 1.53348 * 103.67263 * 359.14144 * 12 11 9 14 14 C 1.52303 * 116.13344 * 108.91148 * 13 12 11 15 15 N 1.47284 * 87.68708 * 91.18103 * 14 13 12 16 16 C 1.36942 * 135.92786 * 206.12790 * 15 14 13 17 17 H 1.08003 * 120.00136 * 6.79529 * 16 15 14 18 18 C 1.38804 * 119.99713 * 186.79235 * 16 15 14 19 19 N 1.31621 * 119.99893 * 172.37074 * 18 16 15 20 20 Si 1.86794 * 120.00271 * 352.37001 * 18 16 15 21 21 H 1.48509 * 109.47067 * 175.35403 * 20 18 16 22 22 H 1.48499 * 109.47130 * 55.35383 * 20 18 16 23 23 H 1.48497 * 109.47427 * 295.35226 * 20 18 16 24 24 C 1.47281 * 88.14217 * 26.38451 * 15 14 13 25 25 O 1.43112 * 106.44597 * 337.44794 * 13 12 11 26 26 C 1.36417 * 105.61826 * 0.26272 * 4 3 2 27 27 O 1.33657 * 108.39408 * 359.57542 * 26 4 3 28 28 H 1.09000 * 109.47307 * 89.99829 * 1 2 3 29 29 H 1.09001 * 109.47276 * 210.00187 * 1 2 3 30 30 H 1.09000 * 109.46809 * 329.99752 * 1 2 3 31 31 H 1.07995 * 127.02567 * 359.97433 * 3 2 1 32 32 H 0.96998 * 120.00139 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47167 * 60.00159 * 8 7 5 34 34 H 1.08993 * 109.46813 * 299.99688 * 8 7 5 35 35 H 1.08995 * 110.50909 * 23.84433 * 11 9 8 36 36 H 1.08998 * 110.62597 * 261.19122 * 11 9 8 37 37 H 1.08997 * 110.58309 * 240.59490 * 12 11 9 38 38 H 1.09000 * 110.71110 * 117.74543 * 12 11 9 39 39 H 1.09003 * 113.51527 * 336.47994 * 14 13 12 40 40 H 1.08998 * 113.58332 * 205.89684 * 14 13 12 41 41 H 0.97008 * 119.99965 * 4.91436 * 19 18 16 42 42 H 1.08999 * 113.51942 * 88.32370 * 24 15 14 43 43 H 1.09003 * 113.51069 * 218.91606 * 24 15 14 44 44 H 1.07995 * 125.80561 * 179.73679 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8320 2.6266 0.0000 7 7 6.1068 0.8074 0.0005 8 6 7.3309 1.6123 0.0008 9 6 8.5495 0.6871 0.0015 10 1 8.5229 0.0239 -0.8631 11 6 9.8534 1.5169 0.0012 12 6 10.8102 0.7149 0.9160 13 6 9.9622 -0.4797 1.3691 14 6 10.3418 -1.8329 0.7824 15 7 11.2267 -2.0216 1.9446 16 6 12.3669 -2.7328 2.2079 17 1 12.8745 -3.2543 1.4098 18 6 12.8704 -2.7835 3.5004 19 7 13.8754 -3.5845 3.7843 20 14 12.1215 -1.7148 4.8370 21 1 12.7574 -2.0343 6.1405 22 1 10.6622 -1.9768 4.9207 23 1 12.3497 -0.2838 4.5125 24 6 10.3456 -1.1163 2.7018 25 8 8.5945 -0.0835 1.2250 26 6 3.5790 -0.7582 -0.0051 27 8 2.2852 -1.0935 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9596 2.1230 -0.0004 32 1 6.1631 -0.1610 0.0004 33 1 7.3521 2.2411 0.8908 34 1 7.3524 2.2412 -0.8891 35 1 9.6742 2.5099 0.4132 36 1 10.2614 1.5906 -1.0069 37 1 11.1145 1.3158 1.7729 38 1 11.6829 0.3756 0.3579 39 1 10.8770 -1.7617 -0.1646 40 1 9.5137 -2.5407 0.7468 41 1 14.3107 -4.0860 3.0771 42 1 9.5178 -1.6264 3.1944 43 1 10.8840 -0.4427 3.3686 44 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053593696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:28 Heat of formation + Delta-G solvation = -2.247797 kcal Electronic energy + Delta-G solvation = -26508.542542 eV Core-core repulsion = 22622.954866 eV Total energy + Delta-G solvation = -3885.587676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.87642 -40.41603 -39.42698 -37.00213 -34.71004 -33.42221 -32.55853 -32.32731 -31.96614 -29.56485 -27.42560 -26.77668 -25.66277 -24.55322 -22.98120 -21.54134 -21.47553 -21.26821 -19.85833 -19.16951 -18.11393 -17.49236 -16.71063 -16.57470 -16.48329 -15.98770 -15.79041 -15.09405 -14.94746 -14.77007 -14.41363 -13.74267 -13.58990 -13.52460 -13.44475 -13.32654 -13.14582 -13.04689 -12.97868 -12.44440 -12.19538 -11.99971 -11.58314 -11.57297 -11.30686 -11.07819 -10.71653 -10.47526 -10.36537 -10.20243 -10.07970 -9.73498 -9.30855 -9.26412 -8.99606 -8.91724 -8.90786 -7.21961 -6.37787 -3.29513 1.05341 1.72262 2.48159 2.91603 3.17812 3.38840 3.42225 3.61617 3.81417 4.19312 4.36894 4.51835 4.55031 4.61413 4.64129 4.76711 4.87583 4.91818 4.95786 5.02328 5.11199 5.15999 5.24723 5.34283 5.37987 5.43112 5.45530 5.55852 5.64883 5.75637 5.88023 6.01528 6.10929 6.12360 6.17256 6.21728 6.22429 6.28682 6.32041 6.50056 6.66641 6.99925 7.19776 7.30396 8.02961 8.17424 8.91212 9.43361 10.27939 11.14862 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002626 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.722563 B =10659.664391 C =11395.777320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.017 4.017 3 C -0.163 4.163 4 C -0.231 4.231 5 C 0.587 3.413 6 O -0.540 6.540 7 N -0.720 5.720 8 C 0.129 3.871 9 C 0.062 3.938 10 H 0.075 0.925 11 C -0.145 4.145 12 C -0.115 4.115 13 C 0.059 3.941 14 C 0.111 3.889 15 N -0.619 5.619 16 C -0.304 4.304 17 H 0.084 0.916 18 C -0.023 4.023 19 N -0.931 5.931 20 Si 1.068 2.932 21 H -0.294 1.294 22 H -0.285 1.285 23 H -0.292 1.292 24 C 0.115 3.885 25 O -0.355 6.355 26 C 0.023 3.977 27 O -0.172 6.172 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.403 0.597 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.261 0.739 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.952 9.364 -10.964 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.183 4.183 4 C -0.236 4.236 5 C 0.375 3.625 6 O -0.419 6.419 7 N -0.371 5.371 8 C 0.006 3.994 9 C 0.003 3.997 10 H 0.093 0.907 11 C -0.183 4.183 12 C -0.152 4.152 13 C 0.019 3.981 14 C -0.016 4.016 15 N -0.350 5.350 16 C -0.430 4.430 17 H 0.102 0.898 18 C -0.222 4.222 19 N -0.573 5.573 20 Si 0.900 3.100 21 H -0.221 1.221 22 H -0.212 1.212 23 H -0.221 1.221 24 C -0.011 4.011 25 O -0.273 6.273 26 C -0.047 4.047 27 O -0.068 6.068 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.176 0.824 32 H 0.238 0.762 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -22.987 10.116 -9.151 26.729 hybrid contribution 0.369 -0.781 -1.775 1.974 sum -22.618 9.335 -10.926 26.797 Atomic orbital electron populations 1.20337 0.84617 1.04325 1.03727 1.22344 0.94204 0.83618 1.06363 1.22479 0.89934 0.99712 1.06149 1.21487 0.94680 0.93297 1.14134 1.17254 0.82185 0.87048 0.76062 1.90783 1.87201 1.13660 1.50217 1.45752 1.05266 1.10657 1.75431 1.21511 0.81448 0.93235 1.03196 1.23219 0.94329 0.92731 0.89377 0.90678 1.22945 0.94560 0.99721 1.01098 1.22337 0.98144 0.95032 0.99718 1.23653 0.80464 0.94200 0.99830 1.22667 0.93198 0.92876 0.92856 1.45752 1.24717 1.55026 1.09472 1.20077 0.98889 1.27555 0.96505 0.89803 1.25746 0.99234 0.99981 0.97216 1.70931 1.25100 1.27023 1.34253 0.83730 0.75289 0.74939 0.76019 1.22076 1.21169 1.22067 1.22684 0.93468 0.91856 0.93059 1.88949 1.27102 1.70629 1.40589 1.24482 0.84330 0.95442 1.00482 1.83738 1.16467 1.35536 1.71062 0.89924 0.90316 0.89133 0.82373 0.76248 0.90363 0.90031 0.90368 0.90249 0.90370 0.89629 0.93505 0.93839 0.92860 0.92834 0.92522 0.77042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.40 36.01 0.37 0.03 16 2 C -0.02 -0.14 7.28 -35.74 -0.26 -0.40 16 3 C -0.16 -1.65 10.90 -37.45 -0.41 -2.06 16 4 C -0.23 -2.54 6.31 -103.28 -0.65 -3.19 16 5 C 0.59 7.51 7.81 -12.54 -0.10 7.41 16 6 O -0.54 -8.79 16.98 5.26 0.09 -8.70 16 7 N -0.72 -7.75 5.51 -61.40 -0.34 -8.09 16 8 C 0.13 1.42 5.28 -4.04 -0.02 1.40 16 9 C 0.06 0.71 3.35 -25.92 -0.09 0.62 16 10 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.14 -1.62 6.65 -24.98 -0.17 -1.78 16 12 C -0.11 -1.72 6.50 -25.62 -0.17 -1.89 16 13 C 0.06 1.03 1.39 -91.01 -0.13 0.90 16 14 C 0.11 2.14 8.18 -7.86 -0.06 2.08 16 15 N -0.62 -15.04 3.68 -184.90 -0.68 -15.72 16 16 C -0.30 -8.65 11.08 -15.06 -0.17 -8.82 16 17 H 0.08 2.50 8.05 -52.48 -0.42 2.07 16 18 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 19 N -0.93 -29.14 13.70 55.49 0.76 -28.38 16 20 Si 1.07 26.70 25.13 -169.99 -4.27 22.43 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.28 -6.70 6.10 56.52 0.34 -6.36 16 23 H -0.29 -6.88 6.63 56.52 0.37 -6.50 16 24 C 0.11 2.46 5.28 -7.71 -0.04 2.42 16 25 O -0.35 -5.39 11.12 -35.23 -0.39 -5.78 16 26 C 0.02 0.20 11.61 30.08 0.35 0.55 16 27 O -0.17 -1.60 10.52 7.64 0.08 -1.52 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.40 3.55 7.44 -40.82 -0.30 3.25 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 38 H 0.09 1.34 7.92 -51.93 -0.41 0.93 16 39 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.26 8.05 8.73 -40.82 -0.36 7.70 16 42 H 0.05 1.16 7.67 -51.93 -0.40 0.76 16 43 H 0.06 1.25 4.69 -51.93 -0.24 1.00 16 44 H 0.21 1.08 7.47 -52.49 -0.39 0.68 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -35.65 363.26 -7.37 -43.02 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.46 Total: 0.76 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.63 Total: -3.49 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.26 Total: -52.20 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.22 Total: -16.00 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -4.27 Total: 22.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.65 -7.37 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053593696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.776 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds