Wall clock time and date at job start Tue Mar 31 2020 12:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34176 * 125.43631 * 2 1 4 4 C 1.47021 * 105.95206 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19287 * 179.97438 * 4 3 2 6 6 O 1.21619 * 120.00087 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00061 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99725 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46647 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.36971 * 57.81596 * 9 8 7 11 11 C 1.54555 * 110.32138 * 179.97438 * 9 8 7 12 12 C 1.54774 * 104.07821 * 142.48979 * 11 9 8 13 13 C 1.53348 * 103.67263 * 359.14144 * 12 11 9 14 14 C 1.52303 * 116.13344 * 108.91148 * 13 12 11 15 15 N 1.47284 * 87.68708 * 91.18103 * 14 13 12 16 16 C 1.36942 * 135.92786 * 206.12790 * 15 14 13 17 17 H 1.08003 * 120.00136 * 6.79529 * 16 15 14 18 18 C 1.38804 * 119.99713 * 186.79235 * 16 15 14 19 19 N 1.31621 * 119.99893 * 172.37074 * 18 16 15 20 20 Si 1.86794 * 120.00271 * 352.37001 * 18 16 15 21 21 H 1.48509 * 109.47067 * 175.35403 * 20 18 16 22 22 H 1.48499 * 109.47130 * 55.35383 * 20 18 16 23 23 H 1.48497 * 109.47427 * 295.35226 * 20 18 16 24 24 C 1.47281 * 88.14217 * 26.38451 * 15 14 13 25 25 O 1.43112 * 106.44597 * 337.44794 * 13 12 11 26 26 C 1.36417 * 105.61826 * 0.26272 * 4 3 2 27 27 O 1.33657 * 108.39408 * 359.57542 * 26 4 3 28 28 H 1.09000 * 109.47307 * 89.99829 * 1 2 3 29 29 H 1.09001 * 109.47276 * 210.00187 * 1 2 3 30 30 H 1.09000 * 109.46809 * 329.99752 * 1 2 3 31 31 H 1.07995 * 127.02567 * 359.97433 * 3 2 1 32 32 H 0.96998 * 120.00139 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47167 * 60.00159 * 8 7 5 34 34 H 1.08993 * 109.46813 * 299.99688 * 8 7 5 35 35 H 1.08995 * 110.50909 * 23.84433 * 11 9 8 36 36 H 1.08998 * 110.62597 * 261.19122 * 11 9 8 37 37 H 1.08997 * 110.58309 * 240.59490 * 12 11 9 38 38 H 1.09000 * 110.71110 * 117.74543 * 12 11 9 39 39 H 1.09003 * 113.51527 * 336.47994 * 14 13 12 40 40 H 1.08998 * 113.58332 * 205.89684 * 14 13 12 41 41 H 0.97008 * 119.99965 * 4.91436 * 19 18 16 42 42 H 1.08999 * 113.51942 * 88.32370 * 24 15 14 43 43 H 1.09003 * 113.51069 * 218.91606 * 24 15 14 44 44 H 1.07995 * 125.80561 * 179.73679 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8320 2.6266 0.0000 7 7 6.1068 0.8074 0.0005 8 6 7.3309 1.6123 0.0008 9 6 8.5495 0.6871 0.0015 10 1 8.5229 0.0239 -0.8631 11 6 9.8534 1.5169 0.0012 12 6 10.8102 0.7149 0.9160 13 6 9.9622 -0.4797 1.3691 14 6 10.3418 -1.8329 0.7824 15 7 11.2267 -2.0216 1.9446 16 6 12.3669 -2.7328 2.2079 17 1 12.8745 -3.2543 1.4098 18 6 12.8704 -2.7835 3.5004 19 7 13.8754 -3.5845 3.7843 20 14 12.1215 -1.7148 4.8370 21 1 12.7574 -2.0343 6.1405 22 1 10.6622 -1.9768 4.9207 23 1 12.3497 -0.2838 4.5125 24 6 10.3456 -1.1163 2.7018 25 8 8.5945 -0.0835 1.2250 26 6 3.5790 -0.7582 -0.0051 27 8 2.2852 -1.0935 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9596 2.1230 -0.0004 32 1 6.1631 -0.1610 0.0004 33 1 7.3521 2.2411 0.8908 34 1 7.3524 2.2412 -0.8891 35 1 9.6742 2.5099 0.4132 36 1 10.2614 1.5906 -1.0069 37 1 11.1145 1.3158 1.7729 38 1 11.6829 0.3756 0.3579 39 1 10.8770 -1.7617 -0.1646 40 1 9.5137 -2.5407 0.7468 41 1 14.3107 -4.0860 3.0771 42 1 9.5178 -1.6264 3.1944 43 1 10.8840 -0.4427 3.3686 44 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053593696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:27 Heat of formation + Delta-G solvation = -28.874226 kcal Electronic energy + Delta-G solvation = -26509.697151 eV Core-core repulsion = 22622.954866 eV Total energy + Delta-G solvation = -3886.742285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.56433 -41.71637 -40.45127 -38.40774 -35.77883 -34.50421 -34.09985 -33.29069 -32.88704 -30.84097 -28.91910 -27.51927 -27.25113 -25.62151 -24.02171 -23.21582 -22.36355 -22.06721 -20.82599 -20.63373 -19.51023 -18.80042 -17.68305 -17.53965 -17.32298 -17.18541 -16.95325 -16.42991 -16.24327 -15.86373 -15.56723 -15.16053 -15.08778 -14.61609 -14.40669 -14.18329 -14.01244 -13.80437 -13.77511 -13.65694 -13.37132 -13.14616 -12.80612 -12.73481 -12.68929 -12.49351 -12.24917 -12.04893 -11.65513 -11.40164 -11.24038 -11.20852 -11.03260 -10.87075 -10.48323 -10.18541 -9.55592 -9.24867 -8.67860 -5.50940 0.31581 1.01525 1.37600 1.45681 1.64719 1.86716 2.07308 2.29166 2.50391 2.59455 2.94723 3.23045 3.38355 3.56712 3.60936 3.64788 3.67963 3.95450 4.02335 4.10824 4.32605 4.39659 4.43124 4.47353 4.53349 4.54712 4.62081 4.69278 4.73118 4.74883 4.81519 4.84180 4.88374 4.94359 5.00390 5.09790 5.10857 5.12823 5.22325 5.33163 5.39358 5.91075 5.95395 5.99530 6.46134 6.65783 7.12883 7.28123 8.20955 8.87684 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002626 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.722563 B =10659.664391 C =11395.777320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.192 4.192 4 C -0.264 4.264 5 C 0.586 3.414 6 O -0.584 6.584 7 N -0.710 5.710 8 C 0.133 3.867 9 C 0.064 3.936 10 H 0.096 0.904 11 C -0.135 4.135 12 C -0.119 4.119 13 C 0.084 3.916 14 C 0.110 3.890 15 N -0.649 5.649 16 C -0.287 4.287 17 H 0.057 0.943 18 C -0.082 4.082 19 N -0.968 5.968 20 Si 1.103 2.897 21 H -0.303 1.303 22 H -0.264 1.264 23 H -0.271 1.271 24 C 0.102 3.898 25 O -0.362 6.362 26 C 0.041 3.959 27 O -0.178 6.178 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.156 0.844 32 H 0.414 0.586 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.248 0.752 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.244 10.299 -12.104 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.212 4.212 4 C -0.268 4.268 5 C 0.375 3.625 6 O -0.466 6.466 7 N -0.362 5.362 8 C 0.009 3.991 9 C 0.006 3.994 10 H 0.114 0.886 11 C -0.173 4.173 12 C -0.157 4.157 13 C 0.043 3.957 14 C -0.015 4.015 15 N -0.380 5.380 16 C -0.414 4.414 17 H 0.074 0.926 18 C -0.274 4.274 19 N -0.613 5.613 20 Si 0.930 3.070 21 H -0.231 1.231 22 H -0.190 1.190 23 H -0.197 1.197 24 C -0.023 4.023 25 O -0.280 6.280 26 C -0.029 4.029 27 O -0.074 6.074 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.174 0.826 32 H 0.250 0.750 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -25.319 11.046 -10.342 29.496 hybrid contribution 0.995 -1.111 -1.546 2.148 sum -24.324 9.935 -11.888 28.839 Atomic orbital electron populations 1.20533 0.82016 1.05462 1.05017 1.22944 0.95601 0.82850 1.04559 1.22636 0.90267 1.00321 1.07935 1.21508 0.94317 0.94369 1.16637 1.17514 0.83067 0.86647 0.75242 1.90751 1.87824 1.15487 1.52562 1.45688 1.04755 1.11235 1.74482 1.21492 0.81196 0.93095 1.03290 1.23421 0.94693 0.92849 0.88424 0.88577 1.22942 0.93058 0.99538 1.01736 1.22367 0.98389 0.94534 1.00382 1.23131 0.82181 0.94087 0.96332 1.22853 0.92498 0.94284 0.91891 1.45780 1.24634 1.55274 1.12264 1.19939 0.99860 1.26076 0.95561 0.92550 1.26962 0.99523 1.01019 0.99878 1.71027 1.27041 1.29251 1.34024 0.83313 0.75706 0.74743 0.73255 1.23137 1.18964 1.19720 1.22832 0.92774 0.91642 0.95033 1.88934 1.25358 1.71135 1.42553 1.25048 0.84849 0.95046 0.97960 1.83776 1.16826 1.35882 1.70897 0.88450 0.89281 0.87873 0.82625 0.74980 0.91734 0.88586 0.89036 0.87673 0.90741 0.90413 0.92301 0.92838 0.94273 0.92945 0.92929 0.73812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.40 71.24 0.74 0.21 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.19 -3.79 10.90 23.65 0.26 -3.53 16 4 C -0.26 -5.48 6.31 -18.99 -0.12 -5.60 16 5 C 0.59 14.38 7.81 86.65 0.68 15.06 16 6 O -0.58 -18.92 16.98 -4.09 -0.07 -18.99 16 7 N -0.71 -13.60 5.51 -466.40 -2.57 -16.17 16 8 C 0.13 2.52 5.28 86.38 0.46 2.98 16 9 C 0.06 1.21 3.35 31.12 0.10 1.32 16 10 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 11 C -0.13 -2.46 6.65 31.73 0.21 -2.25 16 12 C -0.12 -3.23 6.50 31.32 0.20 -3.02 16 13 C 0.08 2.68 1.39 -11.04 -0.02 2.66 16 14 C 0.11 4.01 8.18 83.48 0.68 4.70 16 15 N -0.65 -30.89 3.68 -740.40 -2.73 -33.62 16 16 C -0.29 -16.51 11.08 84.03 0.93 -15.58 16 17 H 0.06 3.47 8.05 -2.91 -0.02 3.45 16 18 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 19 N -0.97 -62.40 13.70 21.65 0.30 -62.10 16 20 Si 1.10 53.83 25.13 68.60 1.72 55.56 16 21 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 22 H -0.26 -11.84 6.10 99.48 0.61 -11.23 16 23 H -0.27 -12.08 6.63 99.48 0.66 -11.42 16 24 C 0.10 4.18 5.28 83.58 0.44 4.62 16 25 O -0.36 -9.77 11.12 -148.98 -1.66 -11.43 16 26 C 0.04 0.61 11.61 67.39 0.78 1.39 16 27 O -0.18 -2.92 10.52 4.41 0.05 -2.87 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.41 5.98 7.44 -92.71 -0.69 5.29 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 2.09 8.11 -2.39 -0.02 2.07 16 38 H 0.08 2.24 7.92 -2.39 -0.02 2.23 16 39 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.25 15.97 8.73 -92.70 -0.81 15.16 16 42 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 43 H 0.05 2.20 4.69 -2.39 -0.01 2.19 16 44 H 0.25 1.62 7.47 -2.91 -0.02 1.60 16 Total: -1.00 -79.69 363.26 1.19 -78.50 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.14 Total: 12.57 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.00 Total: -1.45 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -5.00 Total: -111.89 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.68 Total: -33.29 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 1.72 Total: 55.56 kcal Total: -79.69 1.19 -78.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053593696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.623 kcal (2) G-P(sol) polarization free energy of solvation -79.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds