Wall clock time and date at job start Tue Mar 31 2020 12:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.34171 * 125.43700 * 2 1 4 4 C 1.47020 * 105.95137 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19522 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99755 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00365 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00175 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47184 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.26426 * 304.38874 * 9 8 7 11 11 C 1.55017 * 110.37962 * 182.26368 * 9 8 7 12 12 C 1.55497 * 101.04033 * 205.00322 * 11 9 8 13 13 C 1.53658 * 101.96569 * 33.48837 * 12 11 9 14 14 C 1.52702 * 115.26538 * 206.90324 * 13 12 11 15 15 N 1.47212 * 87.79916 * 219.25147 * 14 13 12 16 16 C 1.36927 * 135.97634 * 206.45846 * 15 14 13 17 17 H 1.08006 * 120.00179 * 6.47823 * 16 15 14 18 18 C 1.38815 * 120.00379 * 186.48128 * 16 15 14 19 19 N 1.31624 * 119.99457 * 6.41820 * 18 16 15 20 20 Si 1.86799 * 120.00372 * 186.41303 * 18 16 15 21 21 H 1.48493 * 109.47229 * 265.02421 * 20 18 16 22 22 H 1.48503 * 109.46902 * 25.02062 * 20 18 16 23 23 H 1.48498 * 109.47032 * 145.02008 * 20 18 16 24 24 C 1.47213 * 88.04942 * 26.71100 * 15 14 13 25 25 O 1.42392 * 108.53712 * 339.12859 * 13 12 11 26 26 C 1.36424 * 105.61770 * 0.22804 * 4 3 2 27 27 O 1.33651 * 108.39155 * 359.63186 * 26 4 3 28 28 H 1.08998 * 109.46767 * 89.99378 * 1 2 3 29 29 H 1.08997 * 109.47402 * 209.99731 * 1 2 3 30 30 H 1.09006 * 109.46504 * 329.99837 * 1 2 3 31 31 H 1.08000 * 127.02793 * 359.97438 * 3 2 1 32 32 H 0.96995 * 119.99309 * 0.02562 * 7 5 4 33 33 H 1.09007 * 109.46638 * 60.00437 * 8 7 5 34 34 H 1.09001 * 109.47299 * 300.01066 * 8 7 5 35 35 H 1.08996 * 111.10880 * 322.94385 * 11 9 8 36 36 H 1.09001 * 111.10488 * 87.02411 * 11 9 8 37 37 H 1.09000 * 110.93174 * 275.31807 * 12 11 9 38 38 H 1.08999 * 110.92833 * 151.64958 * 12 11 9 39 39 H 1.08998 * 113.49916 * 104.51529 * 14 13 12 40 40 H 1.09003 * 113.49770 * 333.98464 * 14 13 12 41 41 H 0.96996 * 119.99454 * 179.97438 * 19 18 16 42 42 H 1.08997 * 113.49924 * 88.02526 * 24 15 14 43 43 H 1.09001 * 113.49764 * 218.56192 * 24 15 14 44 44 H 1.07997 * 125.80514 * 179.75040 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6711 0.6028 0.0006 5 6 4.9026 1.4123 0.0003 6 8 4.8321 2.6264 0.0000 7 7 6.1069 0.8072 0.0015 8 6 7.3310 1.6119 0.0007 9 6 8.5496 0.6867 0.0017 10 1 8.5011 -0.0006 0.8462 11 6 9.8576 1.5168 0.0582 12 6 10.8659 0.5285 -0.5933 13 6 9.9833 -0.1947 -1.6224 14 6 10.4292 -1.6099 -1.9834 15 7 10.0566 -1.3111 -3.3759 16 6 9.6557 -2.0373 -4.4653 17 1 9.4539 -3.0936 -4.3657 18 6 9.5087 -1.4158 -5.6979 19 7 9.8744 -0.1606 -5.8497 20 14 8.7920 -2.3610 -7.1409 21 1 9.8947 -2.9301 -7.9566 22 1 7.9325 -3.4610 -6.6343 23 1 7.9790 -1.4434 -7.9789 24 6 10.3099 0.1098 -3.0858 25 8 8.6213 -0.0459 -1.2349 26 6 3.5790 -0.7584 -0.0043 27 8 2.2852 -1.0936 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8901 0.5139 31 1 1.9597 2.1230 -0.0004 32 1 6.1630 -0.1612 0.0022 33 1 7.3521 2.2421 0.8899 34 1 7.3526 2.2397 -0.8901 35 1 9.7684 2.4305 -0.5293 36 1 10.1362 1.7407 1.0880 37 1 11.2570 -0.1718 0.1449 38 1 11.6762 1.0667 -1.0851 39 1 9.8174 -2.3880 -1.5272 40 1 11.4975 -1.7774 -1.8458 41 1 9.7720 0.2735 -6.7111 42 1 11.3457 0.4083 -3.2470 43 1 9.5971 0.7841 -3.5606 44 1 4.4103 -1.4478 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053593697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:31 Heat of formation + Delta-G solvation = -4.620157 kcal Electronic energy + Delta-G solvation = -26700.201301 eV Core-core repulsion = 22814.510752 eV Total energy + Delta-G solvation = -3885.690549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.71513 -40.04980 -39.17957 -36.58151 -34.45861 -33.26481 -32.35419 -32.12471 -31.76783 -29.34936 -27.23496 -26.58922 -24.74952 -24.50228 -23.02615 -21.43951 -21.43068 -21.19277 -19.67521 -19.05125 -17.93517 -16.84270 -16.51198 -16.39424 -16.27409 -15.81374 -15.07361 -14.83107 -14.64328 -14.40819 -13.93246 -13.53898 -13.48075 -13.40695 -13.34132 -13.28254 -13.05484 -12.91411 -12.43923 -12.30322 -12.06158 -11.81311 -11.45762 -11.24149 -11.09883 -11.02119 -10.80124 -10.43635 -10.12204 -10.00530 -9.91156 -9.76117 -9.47097 -9.06845 -8.78810 -8.74466 -8.65794 -6.85437 -5.74829 -3.04663 1.22805 1.88125 2.63720 3.11140 3.37673 3.41416 3.46343 3.49056 3.95144 4.35066 4.47748 4.54190 4.66844 4.77583 4.82717 4.99746 5.05092 5.15005 5.15652 5.23361 5.32480 5.38312 5.40103 5.51252 5.57234 5.58114 5.64647 5.71784 5.81599 5.88015 6.05322 6.11815 6.17120 6.24393 6.39905 6.41435 6.55153 6.66048 6.82216 6.96165 7.19558 7.50851 7.53072 7.75961 8.00409 8.23099 9.06484 9.73590 10.67300 11.44313 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.003507 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.299483 B = 7982.876596 C = 9924.227364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.019 4.019 3 C -0.163 4.163 4 C -0.230 4.230 5 C 0.587 3.413 6 O -0.542 6.542 7 N -0.717 5.717 8 C 0.125 3.875 9 C 0.063 3.937 10 H 0.072 0.928 11 C -0.145 4.145 12 C -0.136 4.136 13 C 0.056 3.944 14 C 0.111 3.889 15 N -0.602 5.602 16 C -0.215 4.215 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.161 3.839 25 O -0.332 6.332 26 C 0.023 3.977 27 O -0.173 6.173 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.402 0.598 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.253 0.747 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 1.363 17.497 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.182 4.182 4 C -0.234 4.234 5 C 0.374 3.626 6 O -0.420 6.420 7 N -0.368 5.368 8 C 0.002 3.998 9 C 0.005 3.995 10 H 0.090 0.910 11 C -0.183 4.183 12 C -0.174 4.174 13 C 0.015 3.985 14 C -0.016 4.016 15 N -0.327 5.327 16 C -0.343 4.343 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.216 1.216 24 C 0.034 3.966 25 O -0.251 6.251 26 C -0.047 4.047 27 O -0.069 6.069 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.176 0.824 32 H 0.237 0.763 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -10.930 1.814 17.006 20.297 hybrid contribution 0.243 -0.744 -0.881 1.178 sum -10.687 1.071 16.125 19.375 Atomic orbital electron populations 1.20324 0.84693 1.04117 1.03773 1.22318 0.94163 0.83667 1.06585 1.22472 0.89984 0.99674 1.06087 1.21497 0.94693 0.93301 1.13941 1.17244 0.82213 0.87043 0.76081 1.90771 1.87217 1.13672 1.50350 1.45720 1.05269 1.10611 1.75219 1.21569 0.81795 0.93427 1.03032 1.23255 0.94269 0.92948 0.89056 0.90984 1.23201 0.94073 0.99256 1.01753 1.22878 0.98501 0.97845 0.98194 1.23432 0.80982 0.97784 0.96298 1.22693 0.96934 0.94330 0.87602 1.45517 1.76741 1.03454 1.07034 1.18892 1.37564 0.92330 0.85472 0.90207 1.24801 1.01750 0.96651 0.97204 1.69842 1.51953 1.11087 1.23726 0.86110 0.78624 0.78663 0.82429 1.21662 1.20537 1.21596 1.22299 0.98116 0.89054 0.87084 1.88424 1.24625 1.74426 1.37640 1.24484 0.84265 0.95496 1.00459 1.83727 1.16489 1.35506 1.71144 0.89907 0.90432 0.89220 0.82413 0.76306 0.90320 0.90322 0.89914 0.90194 0.90763 0.89758 0.93799 0.94109 0.93681 0.94291 0.91665 0.77027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.40 36.01 0.37 -0.08 16 2 C -0.02 -0.19 7.28 -35.73 -0.26 -0.45 16 3 C -0.16 -1.96 10.90 -37.46 -0.41 -2.37 16 4 C -0.23 -3.02 6.31 -103.27 -0.65 -3.67 16 5 C 0.59 8.92 7.81 -12.54 -0.10 8.82 16 6 O -0.54 -10.05 16.98 5.27 0.09 -9.96 16 7 N -0.72 -9.53 5.53 -61.40 -0.34 -9.87 16 8 C 0.13 1.67 5.39 -4.04 -0.02 1.65 16 9 C 0.06 0.82 3.48 -25.67 -0.09 0.73 16 10 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 11 C -0.14 -1.68 6.58 -24.34 -0.16 -1.84 16 12 C -0.14 -1.84 6.39 -25.06 -0.16 -2.00 16 13 C 0.06 1.04 1.75 -90.44 -0.16 0.88 16 14 C 0.11 2.29 8.20 -8.08 -0.07 2.23 16 15 N -0.60 -15.88 3.77 -184.60 -0.70 -16.58 16 16 C -0.22 -6.21 10.73 -15.06 -0.16 -6.37 16 17 H 0.08 2.22 7.84 -52.48 -0.41 1.80 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -28.06 11.82 55.49 0.66 -27.40 16 20 Si 0.91 22.69 29.56 -169.99 -5.02 17.67 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 C 0.16 3.83 6.71 -7.92 -0.05 3.78 16 25 O -0.33 -6.09 10.84 -35.23 -0.38 -6.47 16 26 C 0.02 0.25 11.61 30.08 0.35 0.60 16 27 O -0.17 -1.92 10.52 7.66 0.08 -1.84 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.40 4.57 7.44 -40.82 -0.30 4.27 16 33 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 38 H 0.08 1.11 7.81 -51.93 -0.41 0.71 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 42 H 0.04 0.93 7.95 -51.93 -0.41 0.52 16 43 H 0.06 1.77 7.60 -51.93 -0.39 1.38 16 44 H 0.21 1.55 7.47 -52.49 -0.39 1.16 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -36.88 371.31 -8.20 -45.09 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.52 Total: 2.18 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.66 Total: 1.59 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.38 Total: -53.85 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.21 Total: -18.28 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.88 -8.20 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053593697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.466 kcal (2) G-P(sol) polarization free energy of solvation -36.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds