Wall clock time and date at job start Tue Mar 31 2020 12:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.34171 * 125.43700 * 2 1 4 4 C 1.47020 * 105.95137 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19522 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99755 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00365 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00175 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47184 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.26426 * 304.38874 * 9 8 7 11 11 C 1.55017 * 110.37962 * 182.26368 * 9 8 7 12 12 C 1.55497 * 101.04033 * 205.00322 * 11 9 8 13 13 C 1.53658 * 101.96569 * 33.48837 * 12 11 9 14 14 C 1.52702 * 115.26538 * 206.90324 * 13 12 11 15 15 N 1.47212 * 87.79916 * 219.25147 * 14 13 12 16 16 C 1.36927 * 135.97634 * 206.45846 * 15 14 13 17 17 H 1.08006 * 120.00179 * 6.47823 * 16 15 14 18 18 C 1.38815 * 120.00379 * 186.48128 * 16 15 14 19 19 N 1.31624 * 119.99457 * 6.41820 * 18 16 15 20 20 Si 1.86799 * 120.00372 * 186.41303 * 18 16 15 21 21 H 1.48493 * 109.47229 * 265.02421 * 20 18 16 22 22 H 1.48503 * 109.46902 * 25.02062 * 20 18 16 23 23 H 1.48498 * 109.47032 * 145.02008 * 20 18 16 24 24 C 1.47213 * 88.04942 * 26.71100 * 15 14 13 25 25 O 1.42392 * 108.53712 * 339.12859 * 13 12 11 26 26 C 1.36424 * 105.61770 * 0.22804 * 4 3 2 27 27 O 1.33651 * 108.39155 * 359.63186 * 26 4 3 28 28 H 1.08998 * 109.46767 * 89.99378 * 1 2 3 29 29 H 1.08997 * 109.47402 * 209.99731 * 1 2 3 30 30 H 1.09006 * 109.46504 * 329.99837 * 1 2 3 31 31 H 1.08000 * 127.02793 * 359.97438 * 3 2 1 32 32 H 0.96995 * 119.99309 * 0.02562 * 7 5 4 33 33 H 1.09007 * 109.46638 * 60.00437 * 8 7 5 34 34 H 1.09001 * 109.47299 * 300.01066 * 8 7 5 35 35 H 1.08996 * 111.10880 * 322.94385 * 11 9 8 36 36 H 1.09001 * 111.10488 * 87.02411 * 11 9 8 37 37 H 1.09000 * 110.93174 * 275.31807 * 12 11 9 38 38 H 1.08999 * 110.92833 * 151.64958 * 12 11 9 39 39 H 1.08998 * 113.49916 * 104.51529 * 14 13 12 40 40 H 1.09003 * 113.49770 * 333.98464 * 14 13 12 41 41 H 0.96996 * 119.99454 * 179.97438 * 19 18 16 42 42 H 1.08997 * 113.49924 * 88.02526 * 24 15 14 43 43 H 1.09001 * 113.49764 * 218.56192 * 24 15 14 44 44 H 1.07997 * 125.80514 * 179.75040 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6711 0.6028 0.0006 5 6 4.9026 1.4123 0.0003 6 8 4.8321 2.6264 0.0000 7 7 6.1069 0.8072 0.0015 8 6 7.3310 1.6119 0.0007 9 6 8.5496 0.6867 0.0017 10 1 8.5011 -0.0006 0.8462 11 6 9.8576 1.5168 0.0582 12 6 10.8659 0.5285 -0.5933 13 6 9.9833 -0.1947 -1.6224 14 6 10.4292 -1.6099 -1.9834 15 7 10.0566 -1.3111 -3.3759 16 6 9.6557 -2.0373 -4.4653 17 1 9.4539 -3.0936 -4.3657 18 6 9.5087 -1.4158 -5.6979 19 7 9.8744 -0.1606 -5.8497 20 14 8.7920 -2.3610 -7.1409 21 1 9.8947 -2.9301 -7.9566 22 1 7.9325 -3.4610 -6.6343 23 1 7.9790 -1.4434 -7.9789 24 6 10.3099 0.1098 -3.0858 25 8 8.6213 -0.0459 -1.2349 26 6 3.5790 -0.7584 -0.0043 27 8 2.2852 -1.0936 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8901 0.5139 31 1 1.9597 2.1230 -0.0004 32 1 6.1630 -0.1612 0.0022 33 1 7.3521 2.2421 0.8899 34 1 7.3526 2.2397 -0.8901 35 1 9.7684 2.4305 -0.5293 36 1 10.1362 1.7407 1.0880 37 1 11.2570 -0.1718 0.1449 38 1 11.6762 1.0667 -1.0851 39 1 9.8174 -2.3880 -1.5272 40 1 11.4975 -1.7774 -1.8458 41 1 9.7720 0.2735 -6.7111 42 1 11.3457 0.4083 -3.2470 43 1 9.5971 0.7841 -3.5606 44 1 4.4103 -1.4478 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053593697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:30 Heat of formation + Delta-G solvation = -31.630967 kcal Electronic energy + Delta-G solvation = -26701.372578 eV Core-core repulsion = 22814.510752 eV Total energy + Delta-G solvation = -3886.861826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.58088 -41.41686 -40.42099 -38.12448 -35.73310 -34.21096 -34.08288 -33.22822 -32.88189 -30.73144 -28.80811 -27.49507 -26.52057 -25.81054 -24.29883 -22.96493 -22.52869 -22.10373 -20.71718 -20.56584 -18.80868 -18.73748 -17.72950 -17.35336 -17.30848 -16.94896 -16.91497 -16.14626 -16.03867 -15.65775 -15.32996 -15.09524 -14.98226 -14.51036 -14.21195 -14.06473 -14.02358 -13.82450 -13.78445 -13.58088 -13.26466 -13.12907 -12.80778 -12.73148 -12.64557 -12.50386 -12.30302 -12.19478 -11.65701 -11.34419 -11.28727 -11.21297 -10.90541 -10.88967 -10.20969 -10.17783 -9.57367 -8.93935 -7.94289 -5.24720 0.29469 0.99775 1.41442 1.44468 1.53425 1.84539 2.06704 2.28195 2.45359 2.70766 3.29889 3.41112 3.57647 3.63151 3.65690 3.72413 3.80803 3.99042 4.01644 4.17272 4.35226 4.45794 4.51025 4.54423 4.62378 4.72052 4.73702 4.77038 4.86054 4.86447 4.91552 4.97810 5.01143 5.07867 5.12986 5.18188 5.25617 5.30993 5.35997 5.38039 5.48528 5.89801 5.97177 6.37079 6.44609 6.88188 7.11061 7.58429 8.60295 9.25226 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.003507 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.299483 B = 7982.876596 C = 9924.227364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.010 4.010 3 C -0.193 4.193 4 C -0.264 4.264 5 C 0.583 3.417 6 O -0.587 6.587 7 N -0.709 5.709 8 C 0.126 3.874 9 C 0.063 3.937 10 H 0.107 0.893 11 C -0.137 4.137 12 C -0.127 4.127 13 C 0.080 3.920 14 C 0.112 3.888 15 N -0.639 5.639 16 C -0.226 4.226 17 H 0.085 0.915 18 C -0.071 4.071 19 N -0.956 5.956 20 Si 0.979 3.021 21 H -0.283 1.283 22 H -0.265 1.265 23 H -0.297 1.297 24 C 0.153 3.847 25 O -0.364 6.364 26 C 0.041 3.959 27 O -0.176 6.176 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.156 0.844 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.247 0.753 42 H 0.033 0.967 43 H 0.016 0.984 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 -0.390 19.866 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.213 4.213 4 C -0.269 4.269 5 C 0.372 3.628 6 O -0.469 6.469 7 N -0.360 5.360 8 C 0.003 3.997 9 C 0.006 3.994 10 H 0.124 0.876 11 C -0.175 4.175 12 C -0.165 4.165 13 C 0.039 3.961 14 C -0.013 4.013 15 N -0.364 5.364 16 C -0.354 4.354 17 H 0.103 0.897 18 C -0.264 4.264 19 N -0.605 5.605 20 Si 0.807 3.193 21 H -0.210 1.210 22 H -0.190 1.190 23 H -0.224 1.224 24 C 0.027 3.973 25 O -0.284 6.284 26 C -0.029 4.029 27 O -0.072 6.072 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.174 0.826 32 H 0.249 0.751 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.035 0.965 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -11.209 0.013 19.424 22.426 hybrid contribution 0.303 -0.218 -1.564 1.608 sum -10.906 -0.205 17.860 20.928 Atomic orbital electron populations 1.20541 0.81759 1.05686 1.04904 1.22978 0.95677 0.82768 1.04427 1.22637 0.90160 1.00409 1.08053 1.21516 0.94335 0.94433 1.16585 1.17595 0.83211 0.86722 0.75255 1.90734 1.87874 1.15535 1.52718 1.45692 1.04860 1.11168 1.74258 1.21582 0.82159 0.93545 1.02450 1.23543 0.94636 0.93374 0.87871 0.87580 1.23242 0.92279 0.98021 1.03929 1.22879 0.97943 0.98386 0.97309 1.23006 0.82471 0.96285 0.94306 1.22895 0.98133 0.95963 0.84359 1.45929 1.77214 1.04757 1.08539 1.19327 1.36579 0.92860 0.86618 0.89733 1.25685 1.02972 0.97665 1.00086 1.70042 1.53834 1.12793 1.23823 0.85053 0.77923 0.77460 0.78895 1.20952 1.19001 1.22354 1.22334 0.96468 0.87326 0.91152 1.88387 1.24572 1.75150 1.40268 1.25011 0.84898 0.95012 0.98026 1.83767 1.16685 1.35844 1.70901 0.88848 0.88913 0.87602 0.82604 0.75097 0.88252 0.93591 0.90946 0.85928 0.87456 0.89466 0.92971 0.91927 0.94452 0.94942 0.96516 0.73956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.40 71.24 0.74 -0.01 16 2 C -0.01 -0.20 7.28 24.76 0.18 -0.02 16 3 C -0.19 -4.70 10.90 23.65 0.26 -4.44 16 4 C -0.26 -6.95 6.31 -18.99 -0.12 -7.07 16 5 C 0.58 18.04 7.81 86.65 0.68 18.72 16 6 O -0.59 -22.67 16.98 -4.07 -0.07 -22.74 16 7 N -0.71 -18.41 5.53 -466.41 -2.58 -20.99 16 8 C 0.13 3.26 5.39 86.38 0.47 3.72 16 9 C 0.06 1.48 3.48 31.28 0.11 1.59 16 10 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 11 C -0.14 -2.72 6.58 32.14 0.21 -2.50 16 12 C -0.13 -3.02 6.39 31.68 0.20 -2.82 16 13 C 0.08 2.90 1.75 -10.67 -0.02 2.88 16 14 C 0.11 4.45 8.20 83.38 0.68 5.13 16 15 N -0.64 -34.15 3.77 -739.00 -2.79 -36.94 16 16 C -0.23 -13.22 10.73 84.04 0.90 -12.32 16 17 H 0.08 4.70 7.84 -2.91 -0.02 4.68 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.96 -60.79 11.82 21.65 0.26 -60.53 16 20 Si 0.98 47.60 29.56 68.60 2.03 49.63 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 C 0.15 7.56 6.71 83.48 0.56 8.12 16 25 O -0.36 -12.98 10.84 -148.98 -1.62 -14.59 16 26 C 0.04 0.82 11.61 67.40 0.78 1.60 16 27 O -0.18 -3.63 10.52 4.48 0.05 -3.58 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.41 8.76 7.44 -92.71 -0.69 8.07 16 33 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 1.94 8.13 -2.39 -0.02 1.92 16 38 H 0.09 2.07 7.81 -2.39 -0.02 2.05 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.25 8.13 -2.39 -0.02 2.24 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.03 1.61 7.95 -2.39 -0.02 1.59 16 43 H 0.02 0.95 7.60 -2.39 -0.02 0.93 16 44 H 0.24 2.95 7.47 -2.91 -0.02 2.93 16 Total: -1.00 -85.36 371.31 1.71 -83.65 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.32 Total: 17.31 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.10 Total: 8.79 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -5.11 Total: -118.46 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.64 Total: -40.91 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -85.36 1.71 -83.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053593697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.021 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds