Wall clock time and date at job start Tue Mar 31 2020 12:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40362 * 126.44562 * 2 1 4 4 C 1.36538 * 106.71382 * 179.97438 * 3 2 1 5 5 C 1.46661 * 125.99158 * 179.97438 * 4 3 2 6 6 O 1.21694 * 119.99813 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99915 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99637 * 179.97438 * 7 5 4 9 9 H 1.08993 * 110.93830 * 31.34978 * 8 7 5 10 10 C 1.55055 * 110.87276 * 267.69238 * 8 7 5 11 11 O 1.44569 * 103.64427 * 205.24887 * 10 8 7 12 12 C 1.42965 * 106.78849 * 39.19938 * 11 10 8 13 13 C 1.53212 * 115.36513 * 104.67059 * 12 11 10 14 14 N 1.47713 * 85.90283 * 93.47455 * 13 12 11 15 15 C 1.36943 * 134.43732 * 204.09730 * 14 13 12 16 16 H 1.07990 * 120.00401 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99484 * 0.02973 * 15 14 13 18 18 N 1.31615 * 120.00231 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47367 * 60.00095 * 19 17 15 21 21 H 1.48503 * 109.47272 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47423 * 300.00272 * 19 17 15 23 23 C 1.47714 * 91.13350 * 24.12377 * 14 13 12 24 24 C 1.53428 * 108.17449 * 334.25111 * 12 11 10 25 25 O 1.34916 * 108.02312 * 0.22526 * 4 3 2 26 26 C 1.33935 * 109.38081 * 359.62363 * 25 4 3 27 27 C 1.50705 * 125.61696 * 180.17186 * 26 25 4 28 28 H 1.08999 * 109.47025 * 90.02544 * 1 2 3 29 29 H 1.08996 * 109.47582 * 210.02466 * 1 2 3 30 30 H 1.09001 * 109.47255 * 330.03046 * 1 2 3 31 31 H 1.08005 * 126.64341 * 0.03397 * 3 2 1 32 32 H 0.96999 * 120.00252 * 359.97438 * 7 5 4 33 33 H 1.09000 * 110.58597 * 323.78875 * 10 8 7 34 34 H 1.08993 * 110.58432 * 86.55477 * 10 8 7 35 35 H 1.08997 * 113.80621 * 207.72703 * 13 12 11 36 36 H 1.09008 * 113.80538 * 339.22649 * 13 12 11 37 37 H 0.97001 * 120.00307 * 179.97438 * 18 17 15 38 38 H 1.09003 * 113.80450 * 221.63880 * 23 14 13 39 39 H 1.08995 * 113.91770 * 90.13638 * 23 14 13 40 40 H 1.09002 * 110.55368 * 120.19559 * 24 12 11 41 41 H 1.08999 * 110.55385 * 242.86787 * 24 12 11 42 42 H 1.08995 * 109.46927 * 270.24720 * 27 26 25 43 43 H 1.09005 * 109.47163 * 30.24010 * 27 26 25 44 44 H 1.08996 * 109.47185 * 150.23974 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3408 1.1291 0.0000 4 6 3.6260 0.6681 0.0006 5 6 4.8379 1.4941 0.0003 6 8 4.7471 2.7076 -0.0011 7 7 6.0521 0.9091 0.0014 8 6 7.2626 1.7342 0.0006 9 1 7.0947 2.6727 0.5288 10 6 7.7524 1.9951 -1.4473 11 8 9.1680 2.2421 -1.2892 12 6 9.6381 1.3284 -0.2952 13 6 10.4418 0.1371 -0.8265 14 7 11.6373 0.9681 -0.5771 15 6 12.9089 0.9954 -1.0847 16 1 13.6190 1.7244 -0.7235 17 6 13.2850 0.0859 -2.0636 18 7 12.4194 -0.8022 -2.5043 19 14 15.0193 0.1235 -2.7566 20 1 15.9953 -0.1047 -1.6609 21 1 15.1663 -0.9416 -3.7809 22 1 15.2750 1.4472 -3.3793 23 6 10.9126 1.7575 0.4395 24 6 8.4580 0.9615 0.6140 25 8 3.5858 -0.6804 -0.0041 26 6 2.3096 -1.0870 0.0006 27 6 1.8453 -2.5208 0.0014 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 2.0266 2.1624 0.0005 32 1 6.1245 -0.0582 0.0029 33 1 7.5837 1.1184 -2.0727 34 1 7.2534 2.8674 -1.8693 35 1 10.3830 -0.7498 -0.1956 36 1 10.2667 -0.0766 -1.8810 37 1 12.6821 -1.4375 -3.1886 38 1 11.1105 2.8282 0.3885 39 1 10.9936 1.3573 1.4501 40 1 8.2737 -0.1125 0.5871 41 1 8.6455 1.2910 1.6360 42 1 1.7336 -2.8670 -1.0261 43 1 2.5801 -3.1404 0.5156 44 1 0.8867 -2.5920 0.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053778039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:04 Heat of formation + Delta-G solvation = -5.650133 kcal Electronic energy + Delta-G solvation = -26547.060199 eV Core-core repulsion = 22661.324986 eV Total energy + Delta-G solvation = -3885.735212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.03414 -40.25314 -39.10116 -36.19734 -34.95879 -34.38629 -32.38927 -32.06894 -30.55077 -29.06536 -28.17365 -26.56855 -25.68421 -24.92997 -23.14909 -21.94218 -21.43549 -21.04127 -19.95799 -19.03934 -18.14146 -16.83745 -16.70945 -16.54418 -15.88922 -15.15074 -15.06637 -14.99081 -14.79356 -14.37276 -14.09538 -13.79478 -13.56134 -13.46016 -13.26624 -13.25145 -13.07768 -13.02292 -12.78723 -12.58573 -12.08750 -11.92966 -11.75949 -11.55734 -11.15162 -11.09372 -10.79885 -10.57118 -10.42764 -10.19790 -10.01323 -9.79172 -9.51870 -9.24950 -8.82778 -8.77344 -8.65649 -6.84839 -5.71973 -3.03554 0.77822 1.96054 2.31246 2.94271 2.96654 3.43553 3.47151 3.48454 4.20336 4.29585 4.43287 4.47166 4.50325 4.67087 4.79334 4.93033 4.97976 5.04721 5.11831 5.20814 5.26078 5.28292 5.34506 5.36374 5.39256 5.48398 5.60080 5.61172 5.69739 5.86208 5.92161 5.96020 6.07048 6.12891 6.28673 6.37535 6.53095 6.57283 6.63852 6.94588 7.23004 7.27074 7.53187 7.71051 7.88122 8.02547 9.08738 9.75242 10.62505 11.45513 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.002404 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.460499 B =11646.637688 C =12262.587438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.195 4.195 3 C -0.113 4.113 4 C -0.078 4.078 5 C 0.604 3.396 6 O -0.520 6.520 7 N -0.705 5.705 8 C 0.110 3.890 9 H 0.109 0.891 10 C 0.038 3.962 11 O -0.332 6.332 12 C 0.057 3.943 13 C 0.154 3.846 14 N -0.605 5.605 15 C -0.219 4.219 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.125 3.875 24 C -0.146 4.146 25 O -0.160 6.160 26 C 0.018 3.982 27 C -0.078 4.078 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.160 0.840 32 H 0.408 0.592 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.405 -2.500 7.100 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.196 4.196 3 C -0.134 4.134 4 C -0.129 4.129 5 C 0.391 3.609 6 O -0.397 6.397 7 N -0.357 5.357 8 C 0.005 3.995 9 H 0.127 0.873 10 C -0.040 4.040 11 O -0.249 6.249 12 C 0.016 3.984 13 C 0.028 3.972 14 N -0.331 5.331 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.001 4.001 24 C -0.185 4.185 25 O -0.057 6.057 26 C -0.034 4.034 27 C -0.135 4.135 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.243 0.757 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.743 -1.753 6.761 25.710 hybrid contribution 0.797 -0.647 -0.285 1.065 sum -23.946 -2.400 6.476 24.922 Atomic orbital electron populations 1.20190 0.88579 1.02762 1.02303 1.20212 0.97542 0.91763 1.10125 1.21819 0.90501 1.00498 1.00583 1.21969 0.96149 0.80281 1.14546 1.16552 0.81254 0.86385 0.76743 1.90894 1.85936 1.12181 1.50728 1.45874 1.04967 1.10793 1.74054 1.22760 0.83196 0.95468 0.98033 0.87339 1.23892 0.83070 1.01822 0.95238 1.88896 1.20238 1.56830 1.58977 1.23785 0.92105 0.93767 0.88752 1.22654 0.83205 0.90522 1.00800 1.45779 1.09629 1.36128 1.41548 1.18954 0.86206 1.13512 1.15958 0.90231 1.24769 0.98246 0.98056 0.99461 1.69798 1.33690 1.21294 1.32276 0.86180 0.83793 0.77175 0.78500 1.21224 1.21597 1.21062 1.22694 0.87770 0.96991 0.92678 1.23076 0.93739 1.00991 1.00706 1.84011 1.28865 1.21774 1.71000 1.22604 0.80596 0.97235 1.02985 1.20421 1.02002 0.87021 1.04028 0.91252 0.91484 0.91293 0.82256 0.75681 0.91969 0.88929 0.94788 0.90364 0.93678 0.92929 0.93574 0.89887 0.89612 0.89485 0.90038 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.17 36.00 0.37 -0.09 16 2 C -0.20 -1.71 6.14 -104.93 -0.64 -2.36 16 3 C -0.11 -1.21 10.57 -39.40 -0.42 -1.63 16 4 C -0.08 -0.92 7.13 -36.80 -0.26 -1.19 16 5 C 0.60 8.09 7.79 -12.86 -0.10 7.99 16 6 O -0.52 -8.40 16.51 5.19 0.09 -8.32 16 7 N -0.71 -8.55 5.18 -53.05 -0.28 -8.82 16 8 C 0.11 1.52 3.51 -65.79 -0.23 1.29 16 9 H 0.11 1.56 7.55 -51.93 -0.39 1.16 16 10 C 0.04 0.61 7.42 38.24 0.28 0.90 16 11 O -0.33 -6.82 11.29 -35.23 -0.40 -7.21 16 12 C 0.06 1.11 1.53 -90.29 -0.14 0.97 16 13 C 0.15 3.67 6.90 -3.27 -0.02 3.65 16 14 N -0.60 -16.10 3.70 -181.59 -0.67 -16.77 16 15 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.92 -27.97 11.39 55.49 0.63 -27.33 16 19 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.12 2.64 8.34 -3.26 -0.03 2.61 16 24 C -0.15 -2.08 6.22 -25.45 -0.16 -2.24 16 25 O -0.16 -1.72 10.40 4.98 0.05 -1.67 16 26 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 27 C -0.08 -0.37 10.21 36.01 0.37 -0.01 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.27 7.13 -51.93 -0.37 -0.10 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.41 4.21 8.16 -40.82 -0.33 3.88 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 36 H 0.08 2.11 7.18 -51.92 -0.37 1.74 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.08 1.08 7.52 -51.93 -0.39 0.69 16 41 H 0.09 1.10 7.93 -51.93 -0.41 0.68 16 42 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.27 7.12 -51.93 -0.37 -0.10 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -35.23 368.73 -7.95 -43.18 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.41 Total: 0.79 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.50 Total: 2.92 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.32 Total: -52.93 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.26 Total: -17.20 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.23 -7.95 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053778039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.533 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds