Wall clock time and date at job start Tue Mar 31 2020 12:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40362 * 126.44562 * 2 1 4 4 C 1.36538 * 106.71382 * 179.97438 * 3 2 1 5 5 C 1.46661 * 125.99158 * 179.97438 * 4 3 2 6 6 O 1.21694 * 119.99813 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99915 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99637 * 179.97438 * 7 5 4 9 9 H 1.08993 * 110.93830 * 31.34978 * 8 7 5 10 10 C 1.55055 * 110.87276 * 267.69238 * 8 7 5 11 11 O 1.44569 * 103.64427 * 205.24887 * 10 8 7 12 12 C 1.42965 * 106.78849 * 39.19938 * 11 10 8 13 13 C 1.53212 * 115.36513 * 104.67059 * 12 11 10 14 14 N 1.47713 * 85.90283 * 93.47455 * 13 12 11 15 15 C 1.36943 * 134.43732 * 204.09730 * 14 13 12 16 16 H 1.07990 * 120.00401 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99484 * 0.02973 * 15 14 13 18 18 N 1.31615 * 120.00231 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47367 * 60.00095 * 19 17 15 21 21 H 1.48503 * 109.47272 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47423 * 300.00272 * 19 17 15 23 23 C 1.47714 * 91.13350 * 24.12377 * 14 13 12 24 24 C 1.53428 * 108.17449 * 334.25111 * 12 11 10 25 25 O 1.34916 * 108.02312 * 0.22526 * 4 3 2 26 26 C 1.33935 * 109.38081 * 359.62363 * 25 4 3 27 27 C 1.50705 * 125.61696 * 180.17186 * 26 25 4 28 28 H 1.08999 * 109.47025 * 90.02544 * 1 2 3 29 29 H 1.08996 * 109.47582 * 210.02466 * 1 2 3 30 30 H 1.09001 * 109.47255 * 330.03046 * 1 2 3 31 31 H 1.08005 * 126.64341 * 0.03397 * 3 2 1 32 32 H 0.96999 * 120.00252 * 359.97438 * 7 5 4 33 33 H 1.09000 * 110.58597 * 323.78875 * 10 8 7 34 34 H 1.08993 * 110.58432 * 86.55477 * 10 8 7 35 35 H 1.08997 * 113.80621 * 207.72703 * 13 12 11 36 36 H 1.09008 * 113.80538 * 339.22649 * 13 12 11 37 37 H 0.97001 * 120.00307 * 179.97438 * 18 17 15 38 38 H 1.09003 * 113.80450 * 221.63880 * 23 14 13 39 39 H 1.08995 * 113.91770 * 90.13638 * 23 14 13 40 40 H 1.09002 * 110.55368 * 120.19559 * 24 12 11 41 41 H 1.08999 * 110.55385 * 242.86787 * 24 12 11 42 42 H 1.08995 * 109.46927 * 270.24720 * 27 26 25 43 43 H 1.09005 * 109.47163 * 30.24010 * 27 26 25 44 44 H 1.08996 * 109.47185 * 150.23974 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3408 1.1291 0.0000 4 6 3.6260 0.6681 0.0006 5 6 4.8379 1.4941 0.0003 6 8 4.7471 2.7076 -0.0011 7 7 6.0521 0.9091 0.0014 8 6 7.2626 1.7342 0.0006 9 1 7.0947 2.6727 0.5288 10 6 7.7524 1.9951 -1.4473 11 8 9.1680 2.2421 -1.2892 12 6 9.6381 1.3284 -0.2952 13 6 10.4418 0.1371 -0.8265 14 7 11.6373 0.9681 -0.5771 15 6 12.9089 0.9954 -1.0847 16 1 13.6190 1.7244 -0.7235 17 6 13.2850 0.0859 -2.0636 18 7 12.4194 -0.8022 -2.5043 19 14 15.0193 0.1235 -2.7566 20 1 15.9953 -0.1047 -1.6609 21 1 15.1663 -0.9416 -3.7809 22 1 15.2750 1.4472 -3.3793 23 6 10.9126 1.7575 0.4395 24 6 8.4580 0.9615 0.6140 25 8 3.5858 -0.6804 -0.0041 26 6 2.3096 -1.0870 0.0006 27 6 1.8453 -2.5208 0.0014 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 2.0266 2.1624 0.0005 32 1 6.1245 -0.0582 0.0029 33 1 7.5837 1.1184 -2.0727 34 1 7.2534 2.8674 -1.8693 35 1 10.3830 -0.7498 -0.1956 36 1 10.2667 -0.0766 -1.8810 37 1 12.6821 -1.4375 -3.1886 38 1 11.1105 2.8282 0.3885 39 1 10.9936 1.3573 1.4501 40 1 8.2737 -0.1125 0.5871 41 1 8.6455 1.2910 1.6360 42 1 1.7336 -2.8670 -1.0261 43 1 2.5801 -3.1404 0.5156 44 1 0.8867 -2.5920 0.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053778039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:03 Heat of formation + Delta-G solvation = -30.602147 kcal Electronic energy + Delta-G solvation = -26548.142199 eV Core-core repulsion = 22661.324986 eV Total energy + Delta-G solvation = -3886.817213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.77814 -41.61187 -40.36014 -37.81604 -35.93558 -35.30944 -34.15223 -33.08558 -31.78609 -29.97493 -29.49351 -27.54611 -27.17267 -26.70414 -24.22648 -23.52886 -22.30690 -22.19195 -20.83822 -20.63433 -19.03252 -18.71578 -17.75239 -17.59189 -17.01279 -16.76791 -16.45519 -16.40593 -15.97806 -15.67028 -15.33634 -14.85413 -14.72845 -14.59924 -14.41252 -14.15316 -14.01567 -13.70531 -13.63848 -13.58455 -13.30556 -13.07506 -12.94684 -12.93055 -12.72397 -12.64903 -12.45243 -12.33501 -11.82677 -11.62755 -11.53136 -11.38695 -10.91575 -10.76185 -10.56021 -10.23703 -9.38325 -8.93189 -7.90703 -5.23359 -0.06011 1.25695 1.43269 1.47821 1.50760 1.53518 1.99995 2.00449 2.46822 2.84869 3.25260 3.35109 3.50598 3.59421 3.63625 3.68581 3.78819 3.86873 4.05904 4.11298 4.30027 4.47293 4.59080 4.63386 4.68337 4.71343 4.72283 4.74106 4.79226 4.85048 4.89349 4.90089 4.94120 5.05473 5.08033 5.10951 5.13124 5.20015 5.32545 5.49861 5.56540 5.83198 5.92545 6.14554 6.32328 6.88373 6.91306 7.59868 8.54613 9.26268 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.002404 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.460499 B =11646.637688 C =12262.587438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.205 4.205 3 C -0.116 4.116 4 C -0.107 4.107 5 C 0.607 3.393 6 O -0.554 6.554 7 N -0.695 5.695 8 C 0.126 3.874 9 H 0.109 0.891 10 C 0.034 3.966 11 O -0.366 6.366 12 C 0.075 3.925 13 C 0.151 3.849 14 N -0.641 5.641 15 C -0.234 4.234 16 H 0.082 0.918 17 C -0.071 4.071 18 N -0.954 5.954 19 Si 0.981 3.019 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.123 3.877 24 C -0.131 4.131 25 O -0.169 6.169 26 C 0.021 3.979 27 C -0.079 4.079 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.418 0.582 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.248 0.752 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.115 -3.312 8.431 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.137 4.137 4 C -0.158 4.158 5 C 0.395 3.605 6 O -0.435 6.435 7 N -0.347 5.347 8 C 0.021 3.979 9 H 0.127 0.873 10 C -0.044 4.044 11 O -0.284 6.284 12 C 0.034 3.966 13 C 0.025 3.975 14 N -0.368 5.368 15 C -0.363 4.363 16 H 0.100 0.900 17 C -0.263 4.263 18 N -0.604 5.604 19 Si 0.809 3.191 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.206 1.206 23 C -0.001 4.001 24 C -0.170 4.170 25 O -0.066 6.066 26 C -0.031 4.031 27 C -0.135 4.135 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -26.474 -2.568 8.124 27.811 hybrid contribution 1.213 -0.404 -0.709 1.462 sum -25.261 -2.972 7.415 26.494 Atomic orbital electron populations 1.20289 0.86283 1.03985 1.03162 1.20598 0.99131 0.90944 1.09977 1.22086 0.90694 1.01347 0.99569 1.21674 0.95774 0.80942 1.17442 1.16704 0.81796 0.86127 0.75888 1.90866 1.86508 1.13631 1.52470 1.45719 1.04189 1.11137 1.73647 1.22478 0.83623 0.95709 0.96112 0.87318 1.24050 0.81181 1.02112 0.97029 1.88856 1.22748 1.57075 1.59688 1.23411 0.93447 0.91065 0.88666 1.22619 0.83934 0.92274 0.98660 1.46196 1.09526 1.37652 1.43386 1.19368 0.87612 1.13278 1.15998 0.90004 1.25653 1.02307 0.98157 1.00213 1.69998 1.35434 1.22063 1.32860 0.85119 0.79265 0.76982 0.77768 1.19957 1.21856 1.20566 1.22942 0.87577 0.96491 0.93126 1.22985 0.91201 1.02212 1.00620 1.83997 1.30186 1.21076 1.71313 1.23461 0.79766 0.99028 1.00836 1.20668 1.03136 0.84440 1.05267 0.90492 0.89382 0.91018 0.82156 0.74485 0.92084 0.88388 0.94303 0.94508 0.94315 0.93020 0.90406 0.88113 0.86907 0.88183 0.89427 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.17 71.23 0.72 0.03 16 2 C -0.21 -3.23 6.14 -20.07 -0.12 -3.35 16 3 C -0.12 -2.41 10.57 22.39 0.24 -2.18 16 4 C -0.11 -2.49 7.13 24.07 0.17 -2.31 16 5 C 0.61 16.00 7.79 86.44 0.67 16.68 16 6 O -0.55 -17.95 16.51 -4.33 -0.07 -18.02 16 7 N -0.70 -16.06 5.18 -439.96 -2.28 -18.34 16 8 C 0.13 3.31 3.51 46.38 0.16 3.48 16 9 H 0.11 2.95 7.55 -2.39 -0.02 2.93 16 10 C 0.03 1.09 7.42 72.69 0.54 1.63 16 11 O -0.37 -15.13 11.29 -148.98 -1.68 -16.81 16 12 C 0.08 2.88 1.53 -10.46 -0.02 2.87 16 13 C 0.15 7.32 6.90 86.21 0.60 7.91 16 14 N -0.64 -34.52 3.70 -733.84 -2.72 -37.24 16 15 C -0.23 -13.81 10.70 84.03 0.90 -12.91 16 16 H 0.08 4.61 7.83 -2.92 -0.02 4.58 16 17 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 18 N -0.95 -59.51 11.39 21.65 0.25 -59.27 16 19 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 C 0.12 5.09 8.34 86.22 0.72 5.81 16 24 C -0.13 -3.46 6.22 31.42 0.20 -3.26 16 25 O -0.17 -3.43 10.40 -5.10 -0.05 -3.48 16 26 C 0.02 0.33 7.31 24.97 0.18 0.51 16 27 C -0.08 -0.50 10.21 71.24 0.73 0.22 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 0.39 7.13 -2.39 -0.02 0.37 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.42 8.01 8.16 -92.71 -0.76 7.25 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 36 H 0.04 2.07 7.18 -2.38 -0.02 2.05 16 37 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 2.76 8.09 -2.39 -0.02 2.74 16 40 H 0.10 2.34 7.52 -2.39 -0.02 2.32 16 41 H 0.11 2.46 7.93 -2.39 -0.02 2.44 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.12 0.21 7.12 -2.39 -0.02 0.19 16 Total: -1.00 -78.88 368.73 1.89 -76.99 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.27 Total: 15.33 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.15 Total: 11.40 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -4.75 Total: -114.84 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.81 Total: -38.32 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -78.88 1.89 -76.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053778039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.390 kcal (2) G-P(sol) polarization free energy of solvation -78.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds