Wall clock time and date at job start Tue Mar 31 2020 12:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34514 * 125.78841 * 2 1 4 4 C 1.41379 * 106.84376 * 179.74481 * 3 2 1 5 5 C 1.34516 * 106.83714 * 0.37055 * 4 3 2 6 6 C 1.50704 * 125.78381 * 179.88749 * 5 4 3 7 7 C 1.50701 * 109.47104 * 89.72100 * 6 5 4 8 8 O 1.21284 * 119.99849 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00198 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99942 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.77502 * 328.53213 * 10 9 7 12 12 C 1.55066 * 110.86820 * 92.29461 * 10 9 7 13 13 O 1.44606 * 103.66567 * 81.63972 * 12 10 9 14 14 C 1.42831 * 106.73860 * 39.09206 * 13 12 10 15 15 C 1.52649 * 115.96711 * 202.47199 * 14 13 12 16 16 N 1.47222 * 87.78102 * 218.40676 * 15 14 13 17 17 C 1.36938 * 135.96802 * 206.37747 * 16 15 14 18 18 H 1.08001 * 119.99838 * 7.53411 * 17 16 15 19 19 C 1.38816 * 120.00205 * 187.53840 * 17 16 15 20 20 N 1.31617 * 120.00068 * 174.45687 * 19 17 16 21 21 Si 1.86799 * 119.99749 * 354.45491 * 19 17 16 22 22 H 1.48499 * 109.47025 * 174.97339 * 21 19 17 23 23 H 1.48499 * 109.47160 * 294.97425 * 21 19 17 24 24 H 1.48500 * 109.46957 * 54.97495 * 21 19 17 25 25 C 1.47213 * 88.06630 * 26.63598 * 16 15 14 26 26 C 1.53329 * 108.32789 * 334.30153 * 14 13 12 27 27 O 1.34297 * 125.79251 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46695 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47358 * 300.00480 * 1 2 3 30 30 H 1.09000 * 109.47186 * 60.01086 * 1 2 3 31 31 H 1.08002 * 126.57690 * 359.95071 * 3 2 1 32 32 H 1.07998 * 126.58342 * 180.23318 * 4 3 2 33 33 H 1.08989 * 109.47251 * 329.71530 * 6 5 4 34 34 H 1.09007 * 109.46672 * 209.71572 * 6 5 4 35 35 H 0.97003 * 119.99801 * 0.02562 * 9 7 6 36 36 H 1.08995 * 110.58238 * 200.18478 * 12 10 9 37 37 H 1.09003 * 110.58374 * 323.09388 * 12 10 9 38 38 H 1.09000 * 113.50254 * 103.68099 * 15 14 13 39 39 H 1.08999 * 113.55829 * 333.14718 * 15 14 13 40 40 H 0.97004 * 120.00108 * 354.85548 * 20 19 17 41 41 H 1.09000 * 113.50445 * 88.09583 * 25 16 15 42 42 H 1.09004 * 113.50076 * 218.64167 * 25 16 15 43 43 H 1.08996 * 110.56372 * 120.19133 * 26 14 13 44 44 H 1.09002 * 110.56344 * 243.04468 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0060 5 6 3.5814 -0.7121 0.0010 6 6 4.7707 -1.6376 0.0022 7 6 5.1661 -1.9458 1.4234 8 8 4.5437 -1.4611 2.3446 9 7 6.2113 -2.7599 1.6707 10 6 6.5959 -3.0590 3.0523 11 1 6.3777 -2.2143 3.7058 12 6 5.8944 -4.3475 3.5544 13 8 6.7147 -5.4127 3.0221 14 6 8.0720 -4.9828 3.1361 15 6 9.0675 -5.6556 2.1945 16 7 10.0356 -5.6459 3.3036 17 6 11.4001 -5.6357 3.4193 18 1 12.0156 -5.5107 2.5407 19 6 11.9921 -5.7862 4.6658 20 7 13.3007 -5.8860 4.7651 21 14 10.9314 -5.8470 6.2023 22 1 11.7859 -6.1333 7.3826 23 1 10.2533 -4.5389 6.3877 24 1 9.9119 -6.9170 6.0579 25 6 8.8947 -5.6586 4.2337 26 6 8.0938 -3.4497 3.1363 27 8 2.2924 -1.0893 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.9664 2.1204 -0.0007 32 1 4.5212 1.2434 0.0112 33 1 5.6043 -1.1587 -0.5112 34 1 4.5112 -2.5633 -0.5116 35 1 6.7093 -3.1472 0.9339 36 1 5.8849 -4.3789 4.6439 37 1 4.8804 -4.4106 3.1593 38 1 9.3632 -5.0278 1.3539 39 1 8.7680 -6.6577 1.8876 40 1 13.8460 -5.9295 3.9641 41 1 8.5474 -6.6615 4.4821 42 1 9.0444 -5.0333 5.1139 43 1 8.5365 -3.0733 4.0585 44 1 8.6366 -3.0744 2.2688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053780328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:32 Heat of formation + Delta-G solvation = 2.553014 kcal Electronic energy + Delta-G solvation = -26669.597319 eV Core-core repulsion = 22784.217822 eV Total energy + Delta-G solvation = -3885.379497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.80644 -40.61713 -39.37129 -36.75083 -34.49892 -33.41142 -33.28379 -32.38805 -31.07210 -29.75323 -28.42821 -25.82901 -25.60410 -25.34894 -22.26807 -21.87152 -21.49860 -20.75823 -20.24760 -19.18064 -17.64386 -17.53004 -17.14984 -16.47843 -16.18651 -15.88152 -15.47451 -15.15717 -14.96450 -14.57102 -14.43431 -13.83039 -13.71117 -13.48998 -13.25068 -13.19084 -13.01997 -12.98165 -12.96560 -12.48090 -12.30073 -11.93764 -11.74549 -11.54637 -11.45692 -11.35415 -10.98612 -10.64009 -10.36046 -10.15048 -10.02808 -9.98292 -9.26387 -9.20435 -8.98249 -8.78091 -8.49042 -7.24145 -6.35173 -3.30213 1.44530 2.35263 2.38387 2.60194 3.08539 3.36688 3.42426 3.61510 4.00027 4.22257 4.44179 4.55156 4.57611 4.65099 4.75971 4.80895 4.81436 4.85047 4.87017 4.97766 5.04220 5.10734 5.11870 5.33576 5.36170 5.42628 5.59779 5.63374 5.71610 5.74716 5.88817 5.93192 6.03141 6.11920 6.22313 6.26363 6.27733 6.32206 6.32699 6.49513 6.95505 7.00566 7.23707 7.30994 7.99475 8.17501 8.91180 9.43031 10.28389 11.14792 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034040 B = 0.002396 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.360142 B =11684.884445 C =11832.865983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.212 4.212 4 C -0.191 4.191 5 C 0.004 3.996 6 C -0.061 4.061 7 C 0.514 3.486 8 O -0.531 6.531 9 N -0.713 5.713 10 C 0.108 3.892 11 H 0.108 0.892 12 C 0.038 3.962 13 O -0.358 6.358 14 C 0.056 3.944 15 C 0.134 3.866 16 N -0.620 5.620 17 C -0.303 4.303 18 H 0.085 0.915 19 C -0.023 4.023 20 N -0.931 5.931 21 Si 1.068 2.932 22 H -0.294 1.294 23 H -0.293 1.293 24 H -0.286 1.286 25 C 0.086 3.914 26 C -0.119 4.119 27 O -0.170 6.170 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.261 0.739 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.193 11.786 -11.305 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.231 4.231 4 C -0.211 4.211 5 C -0.047 4.047 6 C -0.101 4.101 7 C 0.300 3.700 8 O -0.407 6.407 9 N -0.365 5.365 10 C 0.003 3.997 11 H 0.126 0.874 12 C -0.040 4.040 13 O -0.276 6.276 14 C 0.015 3.985 15 C 0.007 3.993 16 N -0.350 5.350 17 C -0.429 4.429 18 H 0.102 0.898 19 C -0.222 4.222 20 N -0.573 5.573 21 Si 0.900 3.100 22 H -0.221 1.221 23 H -0.221 1.221 24 H -0.213 1.213 25 C -0.040 4.040 26 C -0.157 4.157 27 O -0.067 6.067 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.240 0.760 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.470 11.555 -9.046 27.680 hybrid contribution 0.427 0.115 -1.918 1.969 sum -23.043 11.671 -10.964 28.061 Atomic orbital electron populations 1.20300 0.85171 1.04012 1.03487 1.22403 0.93947 0.84123 1.05804 1.21510 0.92661 0.99369 1.09609 1.21498 0.98284 0.93659 1.07628 1.21383 0.82612 0.93798 1.06886 1.20091 0.93804 1.00379 0.95810 1.20408 0.80135 0.78484 0.90975 1.90749 1.52397 1.51431 1.46102 1.45910 1.32699 1.49047 1.08831 1.22620 0.94775 0.98818 0.83466 0.87429 1.23952 0.95467 0.85814 0.98760 1.88782 1.16113 1.40081 1.82589 1.23679 0.81524 0.93275 1.00009 1.22356 0.86840 0.97889 0.92208 1.45742 1.00297 1.87516 1.01455 1.20106 0.77254 1.48852 0.96648 0.89768 1.25725 0.97845 0.98707 0.99930 1.70922 1.03529 1.51473 1.31370 0.83752 0.73951 0.76193 0.76102 1.22111 1.22100 1.21260 1.23217 0.87482 0.98680 0.94584 1.22727 0.93920 0.94072 1.05015 1.83926 1.16194 1.35147 1.71450 0.90619 0.89672 0.89739 0.83555 0.83572 0.85707 0.86863 0.75983 0.91109 0.89091 0.93254 0.93606 0.92862 0.92910 0.92718 0.88628 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.01 0.38 -0.07 16 2 C -0.01 -0.13 7.32 -35.62 -0.26 -0.39 16 3 C -0.21 -2.12 10.81 -39.70 -0.43 -2.55 16 4 C -0.19 -2.04 10.81 -39.70 -0.43 -2.47 16 5 C 0.00 0.04 5.81 -35.62 -0.21 -0.17 16 6 C -0.06 -0.50 6.23 -29.03 -0.18 -0.68 16 7 C 0.51 5.86 7.82 -10.99 -0.09 5.78 16 8 O -0.53 -8.29 15.68 5.55 0.09 -8.20 16 9 N -0.71 -7.45 5.15 -51.71 -0.27 -7.72 16 10 C 0.11 1.35 3.51 -65.77 -0.23 1.12 16 11 H 0.11 1.38 7.54 -51.93 -0.39 0.99 16 12 C 0.04 0.51 7.42 38.25 0.28 0.79 16 13 O -0.36 -5.76 11.32 -35.23 -0.40 -6.15 16 14 C 0.06 0.96 1.66 -90.68 -0.15 0.81 16 15 C 0.13 2.58 8.20 -8.04 -0.07 2.51 16 16 N -0.62 -14.90 3.65 -184.66 -0.67 -15.57 16 17 C -0.30 -8.53 11.08 -15.06 -0.17 -8.70 16 18 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 19 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 20 N -0.93 -29.04 13.70 55.49 0.76 -28.28 16 21 Si 1.07 26.59 25.17 -169.99 -4.28 22.31 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.29 -6.80 6.49 56.52 0.37 -6.43 16 24 H -0.29 -6.74 6.18 56.52 0.35 -6.39 16 25 C 0.09 1.83 5.20 -7.91 -0.04 1.79 16 26 C -0.12 -1.72 6.11 -25.49 -0.16 -1.88 16 27 O -0.17 -2.06 10.65 5.73 0.06 -2.00 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 0.65 8.14 -51.94 -0.42 0.23 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 3.40 8.63 -40.82 -0.35 3.05 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16 41 H 0.05 1.15 7.62 -51.93 -0.40 0.76 16 42 H 0.06 1.18 4.57 -51.93 -0.24 0.94 16 43 H 0.10 1.47 7.82 -51.93 -0.41 1.06 16 44 H 0.09 1.22 7.70 -51.93 -0.40 0.82 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -35.85 362.83 -7.57 -43.41 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.48 Total: 1.62 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.84 Total: -4.88 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.18 Total: -51.58 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.25 Total: -16.36 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.28 Total: 22.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.85 -7.57 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053780328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.968 kcal (2) G-P(sol) polarization free energy of solvation -35.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds