Wall clock time and date at job start Tue Mar 31 2020 12:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34514 * 125.78841 * 2 1 4 4 C 1.41379 * 106.84376 * 179.74481 * 3 2 1 5 5 C 1.34516 * 106.83714 * 0.37055 * 4 3 2 6 6 C 1.50704 * 125.78381 * 179.88749 * 5 4 3 7 7 C 1.50701 * 109.47104 * 89.72100 * 6 5 4 8 8 O 1.21284 * 119.99849 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00198 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99942 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.77502 * 328.53213 * 10 9 7 12 12 C 1.55066 * 110.86820 * 92.29461 * 10 9 7 13 13 O 1.44606 * 103.66567 * 81.63972 * 12 10 9 14 14 C 1.42831 * 106.73860 * 39.09206 * 13 12 10 15 15 C 1.52649 * 115.96711 * 202.47199 * 14 13 12 16 16 N 1.47222 * 87.78102 * 218.40676 * 15 14 13 17 17 C 1.36938 * 135.96802 * 206.37747 * 16 15 14 18 18 H 1.08001 * 119.99838 * 7.53411 * 17 16 15 19 19 C 1.38816 * 120.00205 * 187.53840 * 17 16 15 20 20 N 1.31617 * 120.00068 * 174.45687 * 19 17 16 21 21 Si 1.86799 * 119.99749 * 354.45491 * 19 17 16 22 22 H 1.48499 * 109.47025 * 174.97339 * 21 19 17 23 23 H 1.48499 * 109.47160 * 294.97425 * 21 19 17 24 24 H 1.48500 * 109.46957 * 54.97495 * 21 19 17 25 25 C 1.47213 * 88.06630 * 26.63598 * 16 15 14 26 26 C 1.53329 * 108.32789 * 334.30153 * 14 13 12 27 27 O 1.34297 * 125.79251 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46695 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47358 * 300.00480 * 1 2 3 30 30 H 1.09000 * 109.47186 * 60.01086 * 1 2 3 31 31 H 1.08002 * 126.57690 * 359.95071 * 3 2 1 32 32 H 1.07998 * 126.58342 * 180.23318 * 4 3 2 33 33 H 1.08989 * 109.47251 * 329.71530 * 6 5 4 34 34 H 1.09007 * 109.46672 * 209.71572 * 6 5 4 35 35 H 0.97003 * 119.99801 * 0.02562 * 9 7 6 36 36 H 1.08995 * 110.58238 * 200.18478 * 12 10 9 37 37 H 1.09003 * 110.58374 * 323.09388 * 12 10 9 38 38 H 1.09000 * 113.50254 * 103.68099 * 15 14 13 39 39 H 1.08999 * 113.55829 * 333.14718 * 15 14 13 40 40 H 0.97004 * 120.00108 * 354.85548 * 20 19 17 41 41 H 1.09000 * 113.50445 * 88.09583 * 25 16 15 42 42 H 1.09004 * 113.50076 * 218.64167 * 25 16 15 43 43 H 1.08996 * 110.56372 * 120.19133 * 26 14 13 44 44 H 1.09002 * 110.56344 * 243.04468 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0060 5 6 3.5814 -0.7121 0.0010 6 6 4.7707 -1.6376 0.0022 7 6 5.1661 -1.9458 1.4234 8 8 4.5437 -1.4611 2.3446 9 7 6.2113 -2.7599 1.6707 10 6 6.5959 -3.0590 3.0523 11 1 6.3777 -2.2143 3.7058 12 6 5.8944 -4.3475 3.5544 13 8 6.7147 -5.4127 3.0221 14 6 8.0720 -4.9828 3.1361 15 6 9.0675 -5.6556 2.1945 16 7 10.0356 -5.6459 3.3036 17 6 11.4001 -5.6357 3.4193 18 1 12.0156 -5.5107 2.5407 19 6 11.9921 -5.7862 4.6658 20 7 13.3007 -5.8860 4.7651 21 14 10.9314 -5.8470 6.2023 22 1 11.7859 -6.1333 7.3826 23 1 10.2533 -4.5389 6.3877 24 1 9.9119 -6.9170 6.0579 25 6 8.8947 -5.6586 4.2337 26 6 8.0938 -3.4497 3.1363 27 8 2.2924 -1.0893 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.9664 2.1204 -0.0007 32 1 4.5212 1.2434 0.0112 33 1 5.6043 -1.1587 -0.5112 34 1 4.5112 -2.5633 -0.5116 35 1 6.7093 -3.1472 0.9339 36 1 5.8849 -4.3789 4.6439 37 1 4.8804 -4.4106 3.1593 38 1 9.3632 -5.0278 1.3539 39 1 8.7680 -6.6577 1.8876 40 1 13.8460 -5.9295 3.9641 41 1 8.5474 -6.6615 4.4821 42 1 9.0444 -5.0333 5.1139 43 1 8.5365 -3.0733 4.0585 44 1 8.6366 -3.0744 2.2688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053780328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:31 Heat of formation + Delta-G solvation = -23.944632 kcal Electronic energy + Delta-G solvation = -26670.746343 eV Core-core repulsion = 22784.217822 eV Total energy + Delta-G solvation = -3886.528521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.54139 -41.86848 -40.46340 -38.20463 -35.55950 -34.51778 -34.16505 -33.95167 -32.01713 -30.67987 -29.93953 -27.37825 -27.15779 -26.07931 -23.44877 -23.07305 -22.64696 -21.68340 -21.01702 -20.75067 -19.51444 -18.51928 -18.10863 -17.48733 -17.35587 -16.92111 -16.57598 -16.31578 -16.17776 -16.01379 -15.40569 -15.17631 -15.12500 -14.67478 -14.35585 -14.16717 -13.88543 -13.74352 -13.72487 -13.62422 -13.43246 -13.01469 -12.89744 -12.78469 -12.68051 -12.52134 -12.37461 -12.26496 -12.04556 -11.68718 -11.31458 -11.08401 -11.06510 -10.78824 -10.52750 -10.02400 -9.27296 -9.20287 -8.62599 -5.50158 0.70395 1.37148 1.46665 1.53753 1.61585 1.65138 1.92301 2.26907 2.51844 2.67119 2.99454 3.22245 3.42125 3.47137 3.53700 3.57654 3.87227 3.94161 4.02309 4.13592 4.26579 4.31557 4.45205 4.46122 4.58142 4.59891 4.62810 4.63490 4.70092 4.72285 4.75653 4.78717 4.87486 4.91144 4.92067 4.99075 5.07423 5.13571 5.30376 5.39606 5.65009 5.92629 5.95440 6.22377 6.48132 6.67271 7.16640 7.29117 8.22593 8.89242 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034040 B = 0.002396 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.360142 B =11684.884445 C =11832.865983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.026 4.026 3 C -0.229 4.229 4 C -0.207 4.207 5 C -0.017 4.017 6 C -0.055 4.055 7 C 0.517 3.483 8 O -0.577 6.577 9 N -0.703 5.703 10 C 0.120 3.880 11 H 0.107 0.893 12 C 0.035 3.965 13 O -0.363 6.363 14 C 0.083 3.917 15 C 0.131 3.869 16 N -0.647 5.647 17 C -0.284 4.284 18 H 0.059 0.941 19 C -0.082 4.082 20 N -0.969 5.969 21 Si 1.102 2.898 22 H -0.305 1.305 23 H -0.266 1.266 24 H -0.268 1.268 25 C 0.074 3.926 26 C -0.115 4.115 27 O -0.192 6.192 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.418 0.582 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.248 0.752 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.718 12.733 -12.183 31.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.248 4.248 4 C -0.226 4.226 5 C -0.067 4.067 6 C -0.094 4.094 7 C 0.304 3.696 8 O -0.456 6.456 9 N -0.356 5.356 10 C 0.014 3.986 11 H 0.125 0.875 12 C -0.042 4.042 13 O -0.281 6.281 14 C 0.041 3.959 15 C 0.006 3.994 16 N -0.378 5.378 17 C -0.412 4.412 18 H 0.077 0.923 19 C -0.275 4.275 20 N -0.614 5.614 21 Si 0.929 3.071 22 H -0.233 1.233 23 H -0.192 1.192 24 H -0.194 1.194 25 C -0.051 4.051 26 C -0.153 4.153 27 O -0.090 6.090 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.182 0.818 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.154 0.846 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -26.037 12.502 -9.987 30.561 hybrid contribution 1.128 -0.180 -1.761 2.099 sum -24.910 12.321 -11.748 30.171 Atomic orbital electron populations 1.20472 0.82746 1.04667 1.05007 1.23171 0.95542 0.83820 1.05090 1.21866 0.92674 1.00409 1.09813 1.21847 0.99129 0.94059 1.07529 1.21912 0.82977 0.94608 1.07237 1.20226 0.93871 1.01379 0.93893 1.20911 0.79379 0.77473 0.91809 1.90735 1.53907 1.53171 1.47748 1.45809 1.32590 1.48724 1.08435 1.22394 0.93157 0.98367 0.84650 0.87459 1.24127 0.95417 0.85305 0.99383 1.88778 1.15442 1.41236 1.82611 1.23191 0.81732 0.94342 0.96589 1.22526 0.86076 0.98677 0.92161 1.45762 0.99698 1.87727 1.04588 1.19975 0.79512 1.46154 0.95517 0.92345 1.26937 0.98125 0.99282 1.03134 1.71016 1.04723 1.54907 1.30738 0.83342 0.73093 0.78012 0.72675 1.23289 1.19248 1.19396 1.23404 0.87244 0.98976 0.95487 1.22683 0.95401 0.91910 1.05318 1.83917 1.16949 1.36232 1.71916 0.90387 0.88557 0.87684 0.81761 0.82347 0.82406 0.84628 0.74473 0.90290 0.88209 0.91244 0.93366 0.94274 0.93392 0.92744 0.89262 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 71.24 0.74 -0.02 16 2 C -0.03 -0.51 7.32 24.83 0.18 -0.32 16 3 C -0.23 -4.31 10.81 22.19 0.24 -4.07 16 4 C -0.21 -4.13 10.81 22.19 0.24 -3.89 16 5 C -0.02 -0.36 5.81 24.83 0.14 -0.21 16 6 C -0.05 -0.74 6.23 29.10 0.18 -0.56 16 7 C 0.52 10.47 7.82 87.66 0.69 11.16 16 8 O -0.58 -17.12 15.68 -3.04 -0.05 -17.17 16 9 N -0.70 -12.45 5.15 -435.91 -2.24 -14.70 16 10 C 0.12 2.65 3.51 46.39 0.16 2.81 16 11 H 0.11 2.48 7.54 -2.39 -0.02 2.47 16 12 C 0.04 0.83 7.42 72.69 0.54 1.37 16 13 O -0.36 -10.55 11.32 -148.98 -1.69 -12.24 16 14 C 0.08 2.62 1.66 -10.83 -0.02 2.60 16 15 C 0.13 4.75 8.20 83.39 0.68 5.43 16 16 N -0.65 -30.35 3.65 -739.24 -2.70 -33.05 16 17 C -0.28 -16.12 11.08 84.03 0.93 -15.19 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 19 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 20 N -0.97 -62.06 13.70 21.65 0.30 -61.76 16 21 Si 1.10 53.35 25.17 68.60 1.73 55.07 16 22 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 23 H -0.27 -11.59 6.49 99.48 0.65 -10.94 16 24 H -0.27 -12.06 6.18 99.48 0.62 -11.44 16 25 C 0.07 2.99 5.20 83.48 0.43 3.42 16 26 C -0.12 -2.99 6.11 31.40 0.19 -2.80 16 27 O -0.19 -4.48 10.65 -2.43 -0.03 -4.50 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.14 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.42 5.39 8.63 -92.71 -0.80 4.59 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.24 7.91 -2.39 -0.02 2.22 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.25 15.89 8.73 -92.71 -0.81 15.08 16 41 H 0.05 2.00 7.62 -2.39 -0.02 1.98 16 42 H 0.05 2.21 4.57 -2.39 -0.01 2.20 16 43 H 0.09 2.50 7.82 -2.39 -0.02 2.48 16 44 H 0.10 2.42 7.70 -2.39 -0.02 2.40 16 Total: -1.00 -79.24 362.83 1.16 -78.08 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.03 Total: 14.94 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.81 Total: -4.68 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -4.65 Total: -109.51 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.76 Total: -33.91 kcal Atomic # 14 Polarization: 53.35 SS G_CDS: 1.73 Total: 55.07 kcal Total: -79.24 1.16 -78.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053780328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.138 kcal (2) G-P(sol) polarization free energy of solvation -79.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds