Wall clock time and date at job start Tue Mar 31 2020 13:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34180 * 127.02170 * 2 1 4 4 O 1.34220 * 109.12081 * 179.97438 * 3 2 1 5 5 C 1.33648 * 110.91005 * 359.72426 * 4 3 2 6 6 C 1.50698 * 125.80179 * 180.28296 * 5 4 3 7 7 C 1.36415 * 108.39784 * 0.44742 * 5 4 3 8 8 C 1.47383 * 127.19296 * 179.83652 * 7 5 4 9 9 O 1.21618 * 119.99489 * 269.68690 * 8 7 5 10 10 N 1.34772 * 120.00070 * 89.68464 * 8 7 5 11 11 C 1.46502 * 120.00184 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.76746 * 31.46429 * 11 10 8 13 13 C 1.55062 * 110.86954 * 267.71011 * 11 10 8 14 14 O 1.44602 * 103.66786 * 205.31911 * 13 11 10 15 15 C 1.42834 * 106.73516 * 39.08121 * 14 13 11 16 16 C 1.52649 * 115.96086 * 202.48652 * 15 14 13 17 17 N 1.47224 * 87.78425 * 218.40776 * 16 15 14 18 18 C 1.36935 * 135.96655 * 206.41687 * 17 16 15 19 19 H 1.07995 * 120.00083 * 6.48200 * 18 17 16 20 20 C 1.38817 * 119.99741 * 186.48533 * 18 17 16 21 21 N 1.31620 * 119.99762 * 6.40711 * 20 18 17 22 22 Si 1.86796 * 119.99659 * 186.41024 * 20 18 17 23 23 H 1.48494 * 109.47314 * 84.99017 * 22 20 18 24 24 H 1.48507 * 109.46943 * 204.98927 * 22 20 18 25 25 H 1.48495 * 109.47489 * 324.98593 * 22 20 18 26 26 C 1.47222 * 88.06547 * 26.67283 * 17 16 15 27 27 C 1.53320 * 108.33238 * 334.31616 * 15 14 13 28 28 H 1.08997 * 109.46845 * 270.02387 * 1 2 3 29 29 H 1.08997 * 109.46862 * 30.02794 * 1 2 3 30 30 H 1.09001 * 109.46911 * 150.02547 * 1 2 3 31 31 H 1.08000 * 125.43711 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47751 * 270.19140 * 6 5 4 33 33 H 1.09004 * 109.47101 * 30.19389 * 6 5 4 34 34 H 1.09001 * 109.47199 * 150.18771 * 6 5 4 35 35 H 0.97001 * 119.99874 * 0.02562 * 10 8 7 36 36 H 1.09000 * 110.58348 * 323.87176 * 13 11 10 37 37 H 1.09005 * 110.58294 * 86.62236 * 13 11 10 38 38 H 1.09001 * 113.50032 * 103.67854 * 16 15 14 39 39 H 1.09004 * 113.56222 * 333.14863 * 16 15 14 40 40 H 0.96999 * 119.99603 * 179.97438 * 21 20 18 41 41 H 1.08997 * 113.50605 * 88.05400 * 26 17 16 42 42 H 1.08996 * 113.50269 * 218.60592 * 26 17 16 43 43 H 1.09004 * 110.56376 * 120.17683 * 27 15 14 44 44 H 1.08997 * 110.56344 * 242.88280 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 4.9291 -1.4920 0.0155 7 6 2.3923 -1.1738 0.0007 8 6 1.9914 -2.5921 0.0010 9 8 1.8264 -3.1774 -1.0522 10 7 1.8077 -3.2402 1.1682 11 6 1.4097 -4.6501 1.1685 12 1 1.8172 -5.1669 0.2996 13 6 -0.1337 -4.7884 1.2256 14 8 -0.3382 -6.0902 1.8211 15 6 0.6515 -6.2363 2.8405 16 6 0.9921 -7.6695 3.2407 17 7 1.0887 -7.1974 4.6319 18 6 1.7574 -7.5900 5.7605 19 1 2.4840 -8.3873 5.7079 20 6 1.5012 -6.9633 6.9724 21 7 0.5289 -6.0809 7.0643 22 14 2.5364 -7.3723 8.4725 23 1 3.7676 -6.5421 8.4656 24 1 1.7561 -7.0903 9.7042 25 1 2.9083 -8.8095 8.4405 26 6 0.1465 -6.1223 4.2799 27 6 1.8481 -5.3475 2.4818 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9894 2.1011 -0.0004 32 1 5.2404 -1.6907 -1.0100 33 1 5.7137 -0.9397 0.5329 34 1 4.7497 -2.4360 0.5301 35 1 1.9390 -2.7731 2.0082 36 1 -0.5654 -4.0081 1.8523 37 1 -0.5590 -4.7521 0.2227 38 1 1.9404 -8.0206 2.8340 39 1 0.1762 -8.3734 3.0762 40 1 0.3497 -5.6432 7.9112 41 1 -0.8995 -6.4052 4.3971 42 1 0.3813 -5.1674 4.7502 43 1 2.0265 -4.6109 3.2653 44 1 2.7392 -5.9532 2.3172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053793032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:12 Heat of formation + Delta-G solvation = -5.760331 kcal Electronic energy + Delta-G solvation = -27120.166355 eV Core-core repulsion = 23234.426365 eV Total energy + Delta-G solvation = -3885.739991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.79172 -40.26473 -39.08005 -36.38004 -34.51299 -34.14595 -32.79651 -32.15293 -30.32531 -28.46137 -28.00370 -26.71872 -25.81634 -24.79048 -23.75266 -22.13440 -21.18849 -20.34256 -19.95052 -18.85809 -18.02269 -16.84441 -16.72208 -16.28012 -16.03418 -15.25737 -15.16746 -14.97930 -14.89561 -14.41821 -13.90693 -13.77817 -13.60557 -13.52499 -13.20020 -13.16666 -12.97475 -12.87159 -12.61974 -12.59898 -12.33219 -11.66911 -11.61329 -11.44055 -11.04132 -10.95212 -10.83379 -10.68359 -10.47204 -10.19527 -10.10012 -9.64800 -9.55881 -9.13077 -8.83632 -8.73770 -8.73048 -6.96220 -5.84621 -3.16276 1.37134 1.97762 2.38899 2.58341 3.12386 3.35266 3.40092 3.42214 4.19000 4.21890 4.46838 4.52989 4.64404 4.76734 4.88537 4.97255 5.01957 5.11818 5.13727 5.29577 5.31621 5.35127 5.35933 5.38713 5.41086 5.52705 5.60749 5.67122 5.87312 5.88883 5.91211 6.09622 6.14914 6.24025 6.36949 6.44788 6.58004 6.60789 6.80776 6.93612 7.10870 7.38349 7.41815 7.57669 7.89104 8.07977 8.96649 9.62939 10.56546 11.34066 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.003097 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.413352 B = 9039.850873 C = 9748.580785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.146 4.146 3 C -0.041 4.041 4 O -0.173 6.173 5 C 0.046 3.954 6 C -0.081 4.081 7 C -0.231 4.231 8 C 0.595 3.405 9 O -0.532 6.532 10 N -0.707 5.707 11 C 0.108 3.892 12 H 0.106 0.894 13 C 0.042 3.958 14 O -0.358 6.358 15 C 0.044 3.956 16 C 0.126 3.874 17 N -0.601 5.601 18 C -0.218 4.218 19 H 0.083 0.917 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.156 3.844 27 C -0.114 4.114 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.207 0.793 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.405 0.595 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.255 0.745 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 14.403 -14.363 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C -0.107 4.107 4 O -0.070 6.070 5 C -0.006 4.006 6 C -0.137 4.137 7 C -0.235 4.235 8 C 0.380 3.620 9 O -0.408 6.408 10 N -0.359 5.359 11 C 0.003 3.997 12 H 0.124 0.876 13 C -0.037 4.037 14 O -0.275 6.275 15 C 0.004 3.996 16 C 0.000 4.000 17 N -0.329 5.329 18 C -0.345 4.345 19 H 0.101 0.899 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.744 3.256 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.030 3.970 27 C -0.152 4.152 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.241 0.759 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.357 13.981 -14.814 20.831 hybrid contribution 0.282 0.169 1.409 1.447 sum 4.639 14.150 -13.405 20.036 Atomic orbital electron populations 1.20221 0.88516 1.03089 1.02657 1.21355 0.96880 0.90473 1.06083 1.23624 0.79567 0.99545 1.08002 1.83719 1.29629 1.21858 1.71755 1.22541 0.96032 0.80823 1.01217 1.20457 0.91156 0.97823 1.04309 1.21007 0.93248 0.93931 1.15308 1.17306 0.76282 0.84615 0.83797 1.90811 1.50759 1.67915 1.31352 1.45997 1.69423 1.11861 1.08619 1.22755 0.95719 0.80943 1.00289 0.87625 1.23822 0.94303 0.86874 0.98675 1.88783 1.54094 1.33190 1.51415 1.23822 0.87820 0.98330 0.89676 1.22435 0.98310 0.92563 0.86694 1.45398 1.50635 1.31193 1.05693 1.18896 1.14843 1.16578 0.84221 0.89890 1.24837 0.98342 0.99775 0.97323 1.69858 1.30884 1.30491 1.25216 0.86115 0.79332 0.77961 0.82209 1.21414 1.21610 1.20605 1.22398 0.93594 0.94204 0.86798 1.22581 0.98467 0.98980 0.95183 0.90789 0.91120 0.91210 0.77647 0.89279 0.89690 0.89005 0.75931 0.92027 0.89168 0.93569 0.94031 0.93538 0.94515 0.92047 0.89560 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.38 36.01 0.37 -0.38 16 2 C -0.15 -1.51 6.38 -102.49 -0.65 -2.16 16 3 C -0.04 -0.36 11.96 29.30 0.35 -0.01 16 4 O -0.17 -1.76 10.52 7.65 0.08 -1.68 16 5 C 0.05 0.48 7.37 -34.97 -0.26 0.23 16 6 C -0.08 -0.64 10.24 36.00 0.37 -0.27 16 7 C -0.23 -2.76 6.07 -103.27 -0.63 -3.39 16 8 C 0.59 8.07 7.25 -12.54 -0.09 7.98 16 9 O -0.53 -9.03 16.75 5.26 0.09 -8.94 16 10 N -0.71 -8.69 5.19 -52.80 -0.27 -8.97 16 11 C 0.11 1.51 3.51 -65.77 -0.23 1.28 16 12 H 0.11 1.55 7.54 -51.93 -0.39 1.16 16 13 C 0.04 0.62 7.42 38.25 0.28 0.91 16 14 O -0.36 -6.57 11.32 -35.23 -0.40 -6.97 16 15 C 0.04 0.85 1.66 -90.66 -0.15 0.70 16 16 C 0.13 2.67 8.20 -8.03 -0.07 2.61 16 17 N -0.60 -15.29 3.73 -184.58 -0.69 -15.97 16 18 C -0.22 -6.01 10.73 -15.06 -0.16 -6.17 16 19 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -26.83 11.82 55.49 0.66 -26.17 16 22 Si 0.91 21.64 29.56 -169.99 -5.02 16.62 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.16 3.69 6.74 -7.87 -0.05 3.64 16 27 C -0.11 -1.81 6.20 -25.50 -0.16 -1.97 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.21 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.73 7.93 -51.93 -0.41 0.32 16 35 H 0.41 4.39 8.39 -40.82 -0.34 4.05 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.54 7.40 -51.93 -0.38 1.15 16 43 H 0.09 1.40 7.45 -51.93 -0.39 1.01 16 44 H 0.08 1.33 7.81 -51.93 -0.41 0.92 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -33.70 371.74 -7.64 -41.34 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.51 Total: 2.42 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.17 Total: 2.72 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.31 Total: -51.11 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.23 Total: -17.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.70 -7.64 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053793032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.577 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds