Wall clock time and date at job start Tue Mar 31 2020 13:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34180 * 127.02170 * 2 1 4 4 O 1.34220 * 109.12081 * 179.97438 * 3 2 1 5 5 C 1.33648 * 110.91005 * 359.72426 * 4 3 2 6 6 C 1.50698 * 125.80179 * 180.28296 * 5 4 3 7 7 C 1.36415 * 108.39784 * 0.44742 * 5 4 3 8 8 C 1.47383 * 127.19296 * 179.83652 * 7 5 4 9 9 O 1.21618 * 119.99489 * 269.68690 * 8 7 5 10 10 N 1.34772 * 120.00070 * 89.68464 * 8 7 5 11 11 C 1.46502 * 120.00184 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.76746 * 31.46429 * 11 10 8 13 13 C 1.55062 * 110.86954 * 267.71011 * 11 10 8 14 14 O 1.44602 * 103.66786 * 205.31911 * 13 11 10 15 15 C 1.42834 * 106.73516 * 39.08121 * 14 13 11 16 16 C 1.52649 * 115.96086 * 202.48652 * 15 14 13 17 17 N 1.47224 * 87.78425 * 218.40776 * 16 15 14 18 18 C 1.36935 * 135.96655 * 206.41687 * 17 16 15 19 19 H 1.07995 * 120.00083 * 6.48200 * 18 17 16 20 20 C 1.38817 * 119.99741 * 186.48533 * 18 17 16 21 21 N 1.31620 * 119.99762 * 6.40711 * 20 18 17 22 22 Si 1.86796 * 119.99659 * 186.41024 * 20 18 17 23 23 H 1.48494 * 109.47314 * 84.99017 * 22 20 18 24 24 H 1.48507 * 109.46943 * 204.98927 * 22 20 18 25 25 H 1.48495 * 109.47489 * 324.98593 * 22 20 18 26 26 C 1.47222 * 88.06547 * 26.67283 * 17 16 15 27 27 C 1.53320 * 108.33238 * 334.31616 * 15 14 13 28 28 H 1.08997 * 109.46845 * 270.02387 * 1 2 3 29 29 H 1.08997 * 109.46862 * 30.02794 * 1 2 3 30 30 H 1.09001 * 109.46911 * 150.02547 * 1 2 3 31 31 H 1.08000 * 125.43711 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47751 * 270.19140 * 6 5 4 33 33 H 1.09004 * 109.47101 * 30.19389 * 6 5 4 34 34 H 1.09001 * 109.47199 * 150.18771 * 6 5 4 35 35 H 0.97001 * 119.99874 * 0.02562 * 10 8 7 36 36 H 1.09000 * 110.58348 * 323.87176 * 13 11 10 37 37 H 1.09005 * 110.58294 * 86.62236 * 13 11 10 38 38 H 1.09001 * 113.50032 * 103.67854 * 16 15 14 39 39 H 1.09004 * 113.56222 * 333.14863 * 16 15 14 40 40 H 0.96999 * 119.99603 * 179.97438 * 21 20 18 41 41 H 1.08997 * 113.50605 * 88.05400 * 26 17 16 42 42 H 1.08996 * 113.50269 * 218.60592 * 26 17 16 43 43 H 1.09004 * 110.56376 * 120.17683 * 27 15 14 44 44 H 1.08997 * 110.56344 * 242.88280 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 4.9291 -1.4920 0.0155 7 6 2.3923 -1.1738 0.0007 8 6 1.9914 -2.5921 0.0010 9 8 1.8264 -3.1774 -1.0522 10 7 1.8077 -3.2402 1.1682 11 6 1.4097 -4.6501 1.1685 12 1 1.8172 -5.1669 0.2996 13 6 -0.1337 -4.7884 1.2256 14 8 -0.3382 -6.0902 1.8211 15 6 0.6515 -6.2363 2.8405 16 6 0.9921 -7.6695 3.2407 17 7 1.0887 -7.1974 4.6319 18 6 1.7574 -7.5900 5.7605 19 1 2.4840 -8.3873 5.7079 20 6 1.5012 -6.9633 6.9724 21 7 0.5289 -6.0809 7.0643 22 14 2.5364 -7.3723 8.4725 23 1 3.7676 -6.5421 8.4656 24 1 1.7561 -7.0903 9.7042 25 1 2.9083 -8.8095 8.4405 26 6 0.1465 -6.1223 4.2799 27 6 1.8481 -5.3475 2.4818 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9894 2.1011 -0.0004 32 1 5.2404 -1.6907 -1.0100 33 1 5.7137 -0.9397 0.5329 34 1 4.7497 -2.4360 0.5301 35 1 1.9390 -2.7731 2.0082 36 1 -0.5654 -4.0081 1.8523 37 1 -0.5590 -4.7521 0.2227 38 1 1.9404 -8.0206 2.8340 39 1 0.1762 -8.3734 3.0762 40 1 0.3497 -5.6432 7.9112 41 1 -0.8995 -6.4052 4.3971 42 1 0.3813 -5.1674 4.7502 43 1 2.0265 -4.6109 3.2653 44 1 2.7392 -5.9532 2.3172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053793032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:11 Heat of formation + Delta-G solvation = -28.852505 kcal Electronic energy + Delta-G solvation = -27121.167707 eV Core-core repulsion = 23234.426365 eV Total energy + Delta-G solvation = -3886.741343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.54225 -41.68331 -40.34691 -38.00130 -35.74844 -34.91494 -34.18781 -33.51757 -31.58010 -29.95446 -29.00981 -27.52673 -27.34989 -26.59595 -24.73712 -23.97273 -22.35540 -21.31101 -20.70462 -20.49574 -18.91673 -18.72157 -17.84019 -17.20209 -17.19169 -16.84567 -16.59431 -16.42886 -16.05355 -15.69390 -15.44894 -14.75418 -14.73874 -14.45671 -14.23149 -14.18132 -14.14252 -14.00987 -13.78694 -13.57660 -13.36126 -13.28391 -12.86899 -12.81509 -12.68384 -12.54623 -12.40901 -12.29321 -11.98384 -11.84012 -11.49330 -11.30863 -10.87827 -10.48373 -10.46112 -10.17354 -9.44472 -9.00372 -7.95123 -5.29017 0.60989 1.22605 1.33827 1.47500 1.49764 1.57867 1.83637 2.13105 2.43365 2.89058 3.25385 3.35465 3.49173 3.53952 3.60854 3.64863 3.74613 3.94952 4.04884 4.09318 4.20680 4.36436 4.56576 4.60869 4.64188 4.64998 4.74612 4.75526 4.77157 4.81882 4.84813 4.90183 4.94146 4.98359 5.01371 5.04013 5.13953 5.19649 5.34123 5.42670 5.46732 5.82735 6.03215 6.06916 6.35579 6.85818 7.03075 7.54881 8.54397 9.23860 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.003097 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.413352 B = 9039.850873 C = 9748.580785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.169 4.169 3 C -0.030 4.030 4 O -0.178 6.178 5 C 0.045 3.955 6 C -0.083 4.083 7 C -0.261 4.261 8 C 0.602 3.398 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.124 3.876 12 H 0.106 0.894 13 C 0.039 3.961 14 O -0.370 6.370 15 C 0.070 3.930 16 C 0.123 3.877 17 N -0.625 5.625 18 C -0.231 4.231 19 H 0.091 0.909 20 C -0.062 4.062 21 N -0.953 5.953 22 Si 0.983 3.017 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.154 3.846 27 C -0.105 4.105 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.250 0.750 41 H 0.009 0.991 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 15.573 -14.974 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.171 4.171 3 C -0.095 4.095 4 O -0.074 6.074 5 C -0.007 4.007 6 C -0.139 4.139 7 C -0.265 4.265 8 C 0.389 3.611 9 O -0.448 6.448 10 N -0.348 5.348 11 C 0.019 3.981 12 H 0.124 0.876 13 C -0.039 4.039 14 O -0.287 6.287 15 C 0.029 3.971 16 C -0.002 4.002 17 N -0.353 5.353 18 C -0.359 4.359 19 H 0.109 0.891 20 C -0.256 4.256 21 N -0.601 5.601 22 Si 0.811 3.189 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.194 1.194 26 C 0.027 3.973 27 C -0.143 4.143 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.262 0.738 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.251 0.749 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.884 15.149 -15.438 22.415 hybrid contribution -0.251 -0.175 1.544 1.574 sum 5.632 14.974 -13.895 21.190 Atomic orbital electron populations 1.20231 0.87692 1.03251 1.03019 1.21637 0.97722 0.90397 1.07358 1.24358 0.78606 1.00791 1.05737 1.83747 1.30474 1.21571 1.71591 1.22937 0.96392 0.81171 1.00195 1.20578 0.90700 0.97604 1.05018 1.21051 0.94590 0.93358 1.17542 1.17496 0.75211 0.85156 0.83188 1.90787 1.52551 1.68907 1.32602 1.45872 1.68829 1.11124 1.08958 1.22490 0.94805 0.81742 0.99102 0.87616 1.24008 0.95225 0.85509 0.99166 1.88768 1.54092 1.34991 1.50895 1.23396 0.88665 0.97506 0.87561 1.22554 0.99296 0.93703 0.84662 1.45681 1.50622 1.32208 1.06765 1.19329 1.14937 1.16427 0.85186 0.89141 1.25697 0.99646 0.99962 1.00246 1.70043 1.32698 1.31827 1.25537 0.85035 0.77626 0.78255 0.78031 1.20566 1.22302 1.19390 1.22325 0.92047 0.92841 0.90038 1.22489 0.97298 0.98607 0.95923 0.90312 0.88852 0.93141 0.73827 0.88564 0.87751 0.89261 0.74900 0.91475 0.87893 0.91257 0.94407 0.94099 0.97327 0.94126 0.89798 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.38 71.24 0.74 -0.62 16 2 C -0.17 -3.24 6.38 -18.48 -0.12 -3.36 16 3 C -0.03 -0.44 11.96 66.89 0.80 0.36 16 4 O -0.18 -3.23 10.52 4.46 0.05 -3.19 16 5 C 0.05 0.89 7.37 25.26 0.19 1.07 16 6 C -0.08 -1.17 10.24 71.24 0.73 -0.44 16 7 C -0.26 -6.00 6.07 -18.99 -0.12 -6.12 16 8 C 0.60 15.95 7.25 86.65 0.63 16.58 16 9 O -0.57 -19.13 16.75 -4.09 -0.07 -19.20 16 10 N -0.70 -16.44 5.19 -439.22 -2.28 -18.71 16 11 C 0.12 3.33 3.51 46.39 0.16 3.49 16 12 H 0.11 2.95 7.54 -2.39 -0.02 2.93 16 13 C 0.04 1.12 7.42 72.69 0.54 1.66 16 14 O -0.37 -13.40 11.32 -148.98 -1.69 -15.09 16 15 C 0.07 2.66 1.66 -10.81 -0.02 2.65 16 16 C 0.12 5.16 8.20 83.40 0.68 5.84 16 17 N -0.62 -32.07 3.73 -739.00 -2.75 -34.82 16 18 C -0.23 -12.75 10.73 84.04 0.90 -11.85 16 19 H 0.09 4.71 7.84 -2.91 -0.02 4.69 16 20 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 21 N -0.95 -56.93 11.82 21.65 0.26 -56.67 16 22 Si 0.98 44.54 29.56 68.60 2.03 46.57 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.15 7.48 6.74 83.50 0.56 8.04 16 27 C -0.11 -3.23 6.20 31.39 0.19 -3.03 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.25 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.30 7.93 -2.39 -0.02 1.28 16 35 H 0.41 8.55 8.39 -92.71 -0.78 7.77 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.07 2.58 7.91 -2.39 -0.02 2.56 16 39 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.04 2.11 7.40 -2.39 -0.02 2.09 16 43 H 0.08 2.66 7.45 -2.38 -0.02 2.64 16 44 H 0.10 2.80 7.81 -2.39 -0.02 2.78 16 Total: -1.00 -73.47 371.74 2.13 -71.34 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.24 Total: 18.49 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.34 Total: 11.28 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.78 Total: -110.21 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.71 Total: -37.47 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -73.47 2.13 -71.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053793032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.486 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds