Wall clock time and date at job start Tue Mar 31 2020 12:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33653 * 125.80046 * 2 1 4 4 C 1.34215 * 110.90692 * 180.26814 * 3 2 1 5 5 C 1.34184 * 109.12789 * 359.76432 * 4 3 2 6 6 C 1.36416 * 125.80362 * 179.86491 * 2 1 3 7 7 C 1.47386 * 127.18995 * 0.02562 * 6 2 1 8 8 O 1.21610 * 120.00177 * 322.33925 * 7 6 2 9 9 N 1.34772 * 119.99766 * 142.33124 * 7 6 2 10 10 C 1.46988 * 120.72493 * 354.62740 * 9 7 6 11 11 C 1.53155 * 108.44353 * 234.57297 * 10 9 7 12 12 C 1.52509 * 109.79917 * 305.47387 * 11 10 9 13 13 H 1.09004 * 108.92964 * 178.97967 * 12 11 10 14 14 O 1.42686 * 110.62111 * 298.67975 * 12 11 10 15 15 C 1.43074 * 113.87615 * 185.35027 * 14 12 11 16 16 C 1.53228 * 109.45143 * 298.35127 * 15 14 12 17 17 N 1.47187 * 108.69083 * 51.58249 * 16 15 14 18 18 C 1.36937 * 121.21837 * 129.03715 * 17 16 15 19 19 H 1.08000 * 120.00062 * 207.44072 * 18 17 16 20 20 C 1.38805 * 120.00300 * 27.44377 * 18 17 16 21 21 N 1.31622 * 119.99969 * 13.75045 * 20 18 17 22 22 Si 1.86798 * 120.00439 * 193.75453 * 20 18 17 23 23 H 1.48495 * 109.47441 * 89.99399 * 22 20 18 24 24 H 1.48501 * 109.47459 * 210.00013 * 22 20 18 25 25 H 1.48500 * 109.46868 * 329.99587 * 22 20 18 26 26 C 1.47589 * 117.56014 * 309.06471 * 17 16 15 27 27 H 1.08995 * 111.16783 * 172.78292 * 26 17 16 28 28 C 1.46788 * 120.72288 * 174.65035 * 9 7 6 29 29 H 1.09002 * 109.47175 * 270.13650 * 1 2 3 30 30 H 1.09006 * 109.47232 * 30.13880 * 1 2 3 31 31 H 1.08999 * 109.46958 * 150.13681 * 1 2 3 32 32 H 1.08002 * 125.43755 * 179.76259 * 4 3 2 33 33 H 1.07996 * 127.02597 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.63959 * 114.88792 * 10 9 7 35 35 H 1.09001 * 109.81441 * 354.36479 * 10 9 7 36 36 H 1.08995 * 109.41801 * 185.36866 * 11 10 9 37 37 H 1.09004 * 109.41349 * 65.57258 * 11 10 9 38 38 H 1.09006 * 109.47488 * 58.34497 * 15 14 12 39 39 H 1.09005 * 109.48079 * 178.35664 * 15 14 12 40 40 H 1.08996 * 109.60247 * 171.34652 * 16 15 14 41 41 H 1.09001 * 109.59957 * 291.82578 * 16 15 14 42 42 H 0.97005 * 120.00395 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.52142 * 245.59316 * 28 9 7 44 44 H 1.09000 * 109.52522 * 5.71458 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0059 5 6 3.6850 -0.5991 -0.0047 6 6 2.3050 -1.1064 0.0026 7 6 1.8740 -2.5158 0.0054 8 8 0.8986 -2.8521 0.6492 9 7 2.5606 -3.4318 -0.7057 10 6 3.6690 -3.0259 -1.5816 11 6 3.3976 -3.5664 -2.9887 12 6 3.1665 -5.0727 -2.9277 13 1 2.9571 -5.4392 -3.9327 14 8 4.3236 -5.7386 -2.4240 15 6 4.2278 -7.1659 -2.4506 16 6 3.0631 -7.6158 -1.5624 17 7 1.8572 -6.8663 -1.9502 18 6 0.6792 -7.5089 -2.2228 19 1 -0.0344 -7.0640 -2.9005 20 6 0.4020 -8.7321 -1.6282 21 7 1.1251 -9.1477 -0.6099 22 14 -0.9971 -9.7886 -2.2730 23 1 -0.4844 -10.6986 -3.3285 24 1 -1.5648 -10.5913 -1.1601 25 1 -2.0545 -8.9155 -2.8431 26 6 1.9645 -5.3967 -2.0351 27 1 1.0566 -4.9591 -2.4500 28 6 2.2176 -4.8567 -0.6227 29 1 -0.3633 0.0024 1.0277 30 1 -0.3634 0.8888 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 4.4172 1.4285 -0.0108 33 1 4.5928 -1.1840 -0.0080 34 1 4.6044 -3.4394 -1.2044 35 1 3.7357 -1.9384 -1.6133 36 1 4.2545 -3.3569 -3.6289 37 1 2.5125 -3.0803 -3.3990 38 1 4.0545 -7.4995 -3.4738 39 1 5.1564 -7.5995 -2.0794 40 1 2.8900 -8.6832 -1.6993 41 1 3.2999 -7.4124 -0.5180 42 1 0.9317 -10.0027 -0.1945 43 1 3.0422 -5.4038 -0.1659 44 1 1.3191 -4.9805 -0.0182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074158510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:03 Heat of formation + Delta-G solvation = -26.440445 kcal Electronic energy + Delta-G solvation = -28437.061119 eV Core-core repulsion = 24550.424371 eV Total energy + Delta-G solvation = -3886.636748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.65017 -39.93468 -38.39919 -35.71189 -34.63956 -33.19492 -32.07867 -31.54861 -31.44846 -29.46939 -27.64827 -26.89096 -25.04762 -23.91809 -22.95139 -22.50593 -21.35624 -21.08548 -19.09387 -18.32043 -17.44408 -16.90307 -16.50338 -16.01999 -15.55318 -15.43203 -15.19417 -14.96671 -14.43969 -14.37300 -13.97990 -13.70845 -13.32334 -13.18108 -13.05402 -13.00820 -12.96466 -12.61206 -12.28274 -12.27696 -11.93142 -11.81655 -11.31073 -11.05189 -10.96647 -10.76601 -10.61081 -10.23435 -10.16351 -10.01575 -9.85574 -9.64573 -9.46018 -8.97999 -8.67264 -8.58427 -8.18041 -6.74193 -5.85336 -3.31804 1.44032 2.01576 2.72896 3.20641 3.34685 3.41172 3.42735 3.46989 4.33576 4.41211 4.44013 4.70877 4.85686 5.04141 5.12315 5.21450 5.30733 5.35514 5.42067 5.43497 5.51022 5.55012 5.67577 5.69565 5.79205 5.84349 6.02906 6.04026 6.06824 6.10610 6.17488 6.20192 6.32398 6.37105 6.44497 6.70746 6.76604 6.92963 7.01420 7.10330 7.50187 7.70759 7.79726 7.89953 8.31446 8.50718 9.09490 9.70161 10.28013 11.21904 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.003945 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.010839 B = 7095.864612 C = 8064.725713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 O -0.179 6.179 4 C -0.043 4.043 5 C -0.186 4.186 6 C -0.231 4.231 7 C 0.583 3.417 8 O -0.541 6.541 9 N -0.597 5.597 10 C 0.107 3.893 11 C -0.122 4.122 12 C 0.080 3.920 13 H 0.051 0.949 14 O -0.387 6.387 15 C 0.039 3.961 16 C 0.138 3.862 17 N -0.584 5.584 18 C -0.255 4.255 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.902 5.902 22 Si 0.908 3.092 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.135 3.865 27 H 0.074 0.926 28 C 0.106 3.894 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.206 0.794 33 H 0.158 0.842 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.256 0.744 43 H 0.069 0.931 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 17.473 -2.512 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 O -0.075 6.075 4 C -0.109 4.109 5 C -0.205 4.205 6 C -0.235 4.235 7 C 0.371 3.629 8 O -0.419 6.419 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.161 4.161 12 C 0.021 3.979 13 H 0.069 0.931 14 O -0.307 6.307 15 C -0.039 4.039 16 C 0.012 3.988 17 N -0.307 5.307 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.026 3.974 27 H 0.092 0.908 28 C -0.017 4.017 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.223 0.777 33 H 0.176 0.824 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.676 17.450 -2.009 18.792 hybrid contribution -0.488 -1.042 -0.310 1.191 sum 6.188 16.409 -2.319 17.689 Atomic orbital electron populations 1.20442 0.83999 1.04260 1.04461 1.22686 0.93968 0.83066 0.99454 1.83736 1.17068 1.34948 1.71761 1.23822 0.83585 0.96289 1.07215 1.22938 0.96754 0.94299 1.06558 1.21262 0.93394 0.94166 1.14674 1.17300 0.82538 0.83662 0.79425 1.90792 1.26649 1.80764 1.43711 1.48094 1.33272 1.08013 1.43564 1.21870 0.89883 1.00088 0.89744 1.21795 1.02489 0.94697 0.97099 1.22221 0.87396 0.91300 0.97008 0.93083 1.87710 1.38210 1.19332 1.85423 1.23345 1.00274 0.80277 1.00014 1.21490 0.83802 0.98870 0.94602 1.44268 1.07907 0.98160 1.80323 1.19189 0.96190 1.02425 1.20601 0.91356 1.25097 0.98398 1.00046 0.95744 1.69990 1.41563 1.21334 1.21690 0.86209 0.81801 0.80357 0.77909 1.21382 1.21607 1.20348 1.21583 0.96036 0.86789 0.92948 0.90782 1.22344 1.02034 0.76985 1.00338 0.89134 0.90432 0.88564 0.77702 0.82403 0.90892 0.89404 0.90493 0.90581 0.94140 0.90160 0.88442 0.95349 0.93425 0.91318 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.86 36.00 0.36 -0.46 16 2 C 0.06 0.77 7.37 -34.97 -0.26 0.51 16 3 O -0.18 -2.01 10.52 7.65 0.08 -1.93 16 4 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16 5 C -0.19 -2.05 8.69 -37.45 -0.33 -2.37 16 6 C -0.23 -3.29 5.43 -103.27 -0.56 -3.85 16 7 C 0.58 10.39 7.36 -12.54 -0.09 10.30 16 8 O -0.54 -11.53 15.69 5.27 0.08 -11.45 16 9 N -0.60 -10.32 2.96 -174.06 -0.52 -10.84 16 10 C 0.11 1.47 5.38 -3.70 -0.02 1.45 16 11 C -0.12 -1.69 5.82 -26.90 -0.16 -1.84 16 12 C 0.08 1.43 2.72 -26.89 -0.07 1.35 16 13 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 14 O -0.39 -7.21 9.59 -35.23 -0.34 -7.55 16 15 C 0.04 0.74 6.97 37.28 0.26 1.00 16 16 C 0.14 3.21 4.91 -3.55 -0.02 3.19 16 17 N -0.58 -14.33 2.71 -163.87 -0.44 -14.78 16 18 C -0.25 -6.88 9.72 -15.06 -0.15 -7.03 16 19 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 20 C 0.01 0.17 5.02 -17.43 -0.09 0.08 16 21 N -0.90 -25.66 11.04 55.49 0.61 -25.05 16 22 Si 0.91 21.53 29.58 -169.99 -5.03 16.50 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 C 0.14 2.84 3.00 -67.08 -0.20 2.63 16 27 H 0.07 1.60 8.03 -51.93 -0.42 1.18 16 28 C 0.11 2.21 5.63 -3.72 -0.02 2.19 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.16 7.62 -51.93 -0.40 0.77 16 32 H 0.21 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.16 1.48 7.32 -52.49 -0.38 1.09 16 34 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 35 H 0.09 1.02 4.57 -51.93 -0.24 0.78 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.10 2.51 6.12 -51.93 -0.32 2.19 16 41 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.07 1.52 6.56 -51.93 -0.34 1.18 16 44 H 0.09 2.16 6.99 -51.93 -0.36 1.80 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -32.10 346.85 -7.48 -39.58 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.17 Total: 3.14 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.99 Total: 7.13 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.35 Total: -50.66 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.17 Total: -20.92 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.10 -7.48 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074158510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.143 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds