Wall clock time and date at job start Tue Mar 31 2020 12:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33653 * 125.80046 * 2 1 4 4 C 1.34215 * 110.90692 * 180.26814 * 3 2 1 5 5 C 1.34184 * 109.12789 * 359.76432 * 4 3 2 6 6 C 1.36416 * 125.80362 * 179.86491 * 2 1 3 7 7 C 1.47386 * 127.18995 * 0.02562 * 6 2 1 8 8 O 1.21610 * 120.00177 * 322.33925 * 7 6 2 9 9 N 1.34772 * 119.99766 * 142.33124 * 7 6 2 10 10 C 1.46988 * 120.72493 * 354.62740 * 9 7 6 11 11 C 1.53155 * 108.44353 * 234.57297 * 10 9 7 12 12 C 1.52509 * 109.79917 * 305.47387 * 11 10 9 13 13 H 1.09004 * 108.92964 * 178.97967 * 12 11 10 14 14 O 1.42686 * 110.62111 * 298.67975 * 12 11 10 15 15 C 1.43074 * 113.87615 * 185.35027 * 14 12 11 16 16 C 1.53228 * 109.45143 * 298.35127 * 15 14 12 17 17 N 1.47187 * 108.69083 * 51.58249 * 16 15 14 18 18 C 1.36937 * 121.21837 * 129.03715 * 17 16 15 19 19 H 1.08000 * 120.00062 * 207.44072 * 18 17 16 20 20 C 1.38805 * 120.00300 * 27.44377 * 18 17 16 21 21 N 1.31622 * 119.99969 * 13.75045 * 20 18 17 22 22 Si 1.86798 * 120.00439 * 193.75453 * 20 18 17 23 23 H 1.48495 * 109.47441 * 89.99399 * 22 20 18 24 24 H 1.48501 * 109.47459 * 210.00013 * 22 20 18 25 25 H 1.48500 * 109.46868 * 329.99587 * 22 20 18 26 26 C 1.47589 * 117.56014 * 309.06471 * 17 16 15 27 27 H 1.08995 * 111.16783 * 172.78292 * 26 17 16 28 28 C 1.46788 * 120.72288 * 174.65035 * 9 7 6 29 29 H 1.09002 * 109.47175 * 270.13650 * 1 2 3 30 30 H 1.09006 * 109.47232 * 30.13880 * 1 2 3 31 31 H 1.08999 * 109.46958 * 150.13681 * 1 2 3 32 32 H 1.08002 * 125.43755 * 179.76259 * 4 3 2 33 33 H 1.07996 * 127.02597 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.63959 * 114.88792 * 10 9 7 35 35 H 1.09001 * 109.81441 * 354.36479 * 10 9 7 36 36 H 1.08995 * 109.41801 * 185.36866 * 11 10 9 37 37 H 1.09004 * 109.41349 * 65.57258 * 11 10 9 38 38 H 1.09006 * 109.47488 * 58.34497 * 15 14 12 39 39 H 1.09005 * 109.48079 * 178.35664 * 15 14 12 40 40 H 1.08996 * 109.60247 * 171.34652 * 16 15 14 41 41 H 1.09001 * 109.59957 * 291.82578 * 16 15 14 42 42 H 0.97005 * 120.00395 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.52142 * 245.59316 * 28 9 7 44 44 H 1.09000 * 109.52522 * 5.71458 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0059 5 6 3.6850 -0.5991 -0.0047 6 6 2.3050 -1.1064 0.0026 7 6 1.8740 -2.5158 0.0054 8 8 0.8986 -2.8521 0.6492 9 7 2.5606 -3.4318 -0.7057 10 6 3.6690 -3.0259 -1.5816 11 6 3.3976 -3.5664 -2.9887 12 6 3.1665 -5.0727 -2.9277 13 1 2.9571 -5.4392 -3.9327 14 8 4.3236 -5.7386 -2.4240 15 6 4.2278 -7.1659 -2.4506 16 6 3.0631 -7.6158 -1.5624 17 7 1.8572 -6.8663 -1.9502 18 6 0.6792 -7.5089 -2.2228 19 1 -0.0344 -7.0640 -2.9005 20 6 0.4020 -8.7321 -1.6282 21 7 1.1251 -9.1477 -0.6099 22 14 -0.9971 -9.7886 -2.2730 23 1 -0.4844 -10.6986 -3.3285 24 1 -1.5648 -10.5913 -1.1601 25 1 -2.0545 -8.9155 -2.8431 26 6 1.9645 -5.3967 -2.0351 27 1 1.0566 -4.9591 -2.4500 28 6 2.2176 -4.8567 -0.6227 29 1 -0.3633 0.0024 1.0277 30 1 -0.3634 0.8888 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 4.4172 1.4285 -0.0108 33 1 4.5928 -1.1840 -0.0080 34 1 4.6044 -3.4394 -1.2044 35 1 3.7357 -1.9384 -1.6133 36 1 4.2545 -3.3569 -3.6289 37 1 2.5125 -3.0803 -3.3990 38 1 4.0545 -7.4995 -3.4738 39 1 5.1564 -7.5995 -2.0794 40 1 2.8900 -8.6832 -1.6993 41 1 3.2999 -7.4124 -0.5180 42 1 0.9317 -10.0027 -0.1945 43 1 3.0422 -5.4038 -0.1659 44 1 1.3191 -4.9805 -0.0182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074158510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:02 Heat of formation + Delta-G solvation = -47.759821 kcal Electronic energy + Delta-G solvation = -28437.985596 eV Core-core repulsion = 24550.424371 eV Total energy + Delta-G solvation = -3887.561225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.53924 -41.41531 -39.91489 -37.18274 -36.46063 -34.28532 -33.36535 -33.10004 -32.73323 -31.04229 -29.36668 -28.00733 -26.38443 -25.67252 -24.54682 -23.70239 -22.84278 -22.14116 -20.47940 -19.60017 -18.95233 -18.51799 -17.56822 -17.20671 -17.04284 -16.96673 -16.73749 -16.42492 -16.13126 -15.65828 -15.51014 -15.02024 -14.86456 -14.53495 -14.37090 -14.06414 -13.97485 -13.89275 -13.79480 -13.67080 -13.28027 -13.04916 -12.89086 -12.73644 -12.60231 -12.44403 -12.27923 -12.11163 -11.88017 -11.71953 -11.25642 -11.13994 -10.76585 -10.60385 -10.52983 -9.76302 -9.47385 -8.71317 -7.93444 -5.43588 0.42449 1.16900 1.43429 1.44371 1.53573 1.78627 1.97561 2.17214 2.45261 2.87642 3.21555 3.43025 3.54126 3.66650 3.86436 3.98312 4.01529 4.12421 4.16629 4.24302 4.33487 4.43585 4.50049 4.55419 4.57572 4.60705 4.64317 4.75520 4.80645 4.83904 4.86957 4.88541 4.95321 5.03305 5.18275 5.21211 5.27597 5.40155 5.47388 5.56057 5.59242 6.07934 6.25289 6.34472 6.44583 7.03129 7.11371 7.69105 8.23959 9.11079 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.003945 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.010839 B = 7095.864612 C = 8064.725713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.060 3.940 3 O -0.177 6.177 4 C -0.017 4.017 5 C -0.201 4.201 6 C -0.260 4.260 7 C 0.578 3.422 8 O -0.590 6.590 9 N -0.596 5.596 10 C 0.107 3.893 11 C -0.115 4.115 12 C 0.086 3.914 13 H 0.051 0.949 14 O -0.382 6.382 15 C 0.051 3.949 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.268 4.268 19 H 0.066 0.934 20 C -0.044 4.044 21 N -0.932 5.932 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.132 3.868 27 H 0.061 0.939 28 C 0.126 3.874 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.256 0.744 33 H 0.175 0.825 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.001 0.999 42 H 0.252 0.748 43 H 0.051 0.949 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 20.412 -4.223 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 O -0.073 6.073 4 C -0.082 4.082 5 C -0.220 4.220 6 C -0.265 4.265 7 C 0.369 3.631 8 O -0.472 6.472 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.153 4.153 12 C 0.027 3.973 13 H 0.069 0.931 14 O -0.301 6.301 15 C -0.026 4.026 16 C 0.019 3.981 17 N -0.325 5.325 18 C -0.398 4.398 19 H 0.084 0.916 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.799 3.201 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.024 3.976 27 H 0.079 0.921 28 C 0.001 3.999 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.271 0.729 33 H 0.192 0.808 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.019 0.981 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.715 20.437 -3.755 22.532 hybrid contribution -1.112 -1.856 0.276 2.182 sum 7.603 18.580 -3.479 20.375 Atomic orbital electron populations 1.20462 0.83455 1.04659 1.04681 1.22860 0.94627 0.83135 0.98657 1.83782 1.18038 1.34120 1.71351 1.24744 0.83461 0.96407 1.03617 1.23111 0.95551 0.95285 1.08039 1.21093 0.95916 0.92037 1.17443 1.17901 0.81670 0.85235 0.78326 1.90756 1.28934 1.81877 1.45681 1.48106 1.34267 1.06220 1.44210 1.22151 0.88439 1.02034 0.88808 1.21840 1.04576 0.91130 0.97775 1.22242 0.85476 0.94074 0.95540 0.93129 1.87726 1.38118 1.18792 1.85425 1.23183 0.99429 0.80791 0.99225 1.21323 0.85173 0.97378 0.94179 1.44493 1.07736 0.99823 1.80458 1.19476 0.97043 1.02893 1.20354 0.91630 1.25839 1.00875 1.01232 0.96047 1.70152 1.43193 1.21461 1.22946 0.85212 0.79120 0.78618 0.77148 1.20501 1.22131 1.19661 1.21717 0.97467 0.84826 0.93546 0.92077 1.21762 0.99194 0.79601 0.99371 0.89033 0.87444 0.90665 0.72857 0.80753 0.90364 0.86306 0.86816 0.89627 0.93534 0.87268 0.91218 0.98109 0.93875 0.93025 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.86 71.24 0.70 -0.90 16 2 C 0.06 1.43 7.37 25.26 0.19 1.62 16 3 O -0.18 -3.34 10.52 4.46 0.05 -3.30 16 4 C -0.02 -0.23 12.03 66.89 0.80 0.57 16 5 C -0.20 -3.72 8.69 23.65 0.21 -3.52 16 6 C -0.26 -7.13 5.43 -18.99 -0.10 -7.23 16 7 C 0.58 21.17 7.36 86.65 0.64 21.80 16 8 O -0.59 -26.86 15.69 -4.06 -0.06 -26.93 16 9 N -0.60 -20.86 2.96 -822.86 -2.44 -23.30 16 10 C 0.11 2.67 5.38 86.34 0.46 3.13 16 11 C -0.12 -2.82 5.82 30.48 0.18 -2.64 16 12 C 0.09 2.95 2.72 30.49 0.08 3.03 16 13 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 14 O -0.38 -13.53 9.59 -148.98 -1.43 -14.96 16 15 C 0.05 1.93 6.97 72.06 0.50 2.43 16 16 C 0.14 7.01 4.91 86.32 0.42 7.44 16 17 N -0.60 -30.77 2.71 -672.36 -1.82 -32.60 16 18 C -0.27 -15.03 9.72 84.03 0.82 -14.21 16 19 H 0.07 3.63 7.87 -2.91 -0.02 3.60 16 20 C -0.04 -2.48 5.02 84.86 0.43 -2.06 16 21 N -0.93 -55.48 11.04 21.65 0.24 -55.24 16 22 Si 0.97 45.49 29.58 68.60 2.03 47.52 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 C 0.13 5.73 3.00 44.95 0.13 5.87 16 27 H 0.06 2.76 8.03 -2.39 -0.02 2.74 16 28 C 0.13 5.54 5.63 86.43 0.49 6.02 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 1.90 7.62 -2.39 -0.02 1.88 16 32 H 0.26 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.18 2.57 7.32 -2.91 -0.02 2.55 16 34 H 0.08 1.92 7.95 -2.39 -0.02 1.91 16 35 H 0.12 2.31 4.57 -2.39 -0.01 2.30 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 40 H 0.07 3.75 6.12 -2.39 -0.01 3.74 16 41 H 0.00 0.04 7.17 -2.39 -0.02 0.03 16 42 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 43 H 0.05 2.42 6.56 -2.39 -0.02 2.40 16 44 H 0.04 2.29 6.99 -2.39 -0.02 2.27 16 Total: -1.00 -75.53 346.85 3.53 -72.01 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.02 Total: 15.44 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 5.95 Total: 21.36 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.02 Total: -111.14 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -1.45 Total: -45.18 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.53 3.53 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074158510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.246 kcal (2) G-P(sol) polarization free energy of solvation -75.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds