Wall clock time and date at job start Tue Mar 31 2020 12:56:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.35124 * 126.44227 * 2 1
4 4 O 1.33928 * 108.76727 * 179.76945 * 3 2 1
5 5 C 1.34912 * 109.38521 * 0.37188 * 4 3 2
6 6 C 1.46658 * 125.98689 * 179.88561 * 5 4 3
7 7 O 1.21697 * 119.99777 * 172.43588 * 6 5 4
8 8 N 1.34772 * 120.00397 * 352.44258 * 6 5 4
9 9 C 1.46843 * 120.40497 * 353.05869 * 8 6 5
10 10 C 1.53366 * 109.25142 * 232.25918 * 9 8 6
11 11 C 1.52785 * 108.81456 * 306.17279 * 10 9 8
12 12 H 1.08992 * 109.34081 * 303.33813 * 11 10 9
13 13 O 1.42602 * 111.11900 * 182.55152 * 11 10 9
14 14 C 1.43140 * 113.63618 * 176.39352 * 13 11 10
15 15 C 1.53199 * 109.73873 * 61.69450 * 14 13 11
16 16 N 1.47360 * 108.79492 * 308.77868 * 15 14 13
17 17 C 1.36930 * 121.30131 * 230.22188 * 16 15 14
18 18 H 1.08000 * 120.00415 * 143.62003 * 17 16 15
19 19 C 1.38821 * 120.00210 * 323.61751 * 17 16 15
20 20 N 1.31617 * 119.99843 * 344.29525 * 19 17 16
21 21 Si 1.86796 * 119.99904 * 164.29075 * 19 17 16
22 22 H 1.48497 * 109.47475 * 0.02562 * 21 19 17
23 23 H 1.48502 * 109.47026 * 120.00349 * 21 19 17
24 24 H 1.48505 * 109.46888 * 240.00146 * 21 19 17
25 25 C 1.46876 * 117.39395 * 50.24171 * 16 15 14
26 26 H 1.09005 * 110.20703 * 67.98796 * 25 16 15
27 27 C 1.47121 * 120.41044 * 173.08247 * 8 6 5
28 28 C 1.36543 * 108.02523 * 359.62929 * 5 4 3
29 29 H 1.09003 * 109.47436 * 270.00219 * 1 2 3
30 30 H 1.08994 * 109.47164 * 30.00779 * 1 2 3
31 31 H 1.09007 * 109.46815 * 150.00341 * 1 2 3
32 32 H 1.08001 * 125.61882 * 359.97262 * 3 2 1
33 33 H 1.08995 * 109.50438 * 112.32409 * 9 8 6
34 34 H 1.09000 * 109.50400 * 352.19124 * 9 8 6
35 35 H 1.08999 * 109.57984 * 186.37157 * 10 9 8
36 36 H 1.09003 * 109.58237 * 65.97261 * 10 9 8
37 37 H 1.09004 * 109.42638 * 181.76881 * 14 13 11
38 38 H 1.08994 * 109.42976 * 301.60971 * 14 13 11
39 39 H 1.08998 * 109.58700 * 188.98959 * 15 14 13
40 40 H 1.08998 * 109.58625 * 68.57260 * 15 14 13
41 41 H 0.96997 * 120.00259 * 179.97438 * 20 19 17
42 42 H 1.08996 * 109.73474 * 246.41888 * 27 8 6
43 43 H 1.09004 * 109.72569 * 7.09454 * 27 8 6
44 44 H 1.07996 * 126.65029 * 180.18908 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3097 1.0870 0.0000
4 8 3.5857 0.6804 0.0051
5 6 3.6260 -0.6681 0.0002
6 6 4.8379 -1.4941 0.0010
7 8 4.7519 -2.7006 0.1350
8 7 6.0469 -0.9170 -0.1465
9 6 6.1543 0.5136 -0.4598
10 6 7.0548 0.6960 -1.6878
11 6 8.3862 -0.0082 -1.4314
12 1 8.8349 0.3884 -0.5207
13 8 9.2856 0.1805 -2.5219
14 6 10.5805 -0.3888 -2.3029
15 6 10.4551 -1.9048 -2.1208
16 7 9.4306 -2.1769 -1.0972
17 6 9.6804 -3.0191 -0.0468
18 1 9.2681 -2.8039 0.9279
19 6 10.4635 -4.1498 -0.2349
20 7 10.7088 -4.5854 -1.4524
21 14 11.1694 -5.0529 1.2401
22 1 10.7493 -4.3667 2.4882
23 1 10.6676 -6.4505 1.2513
24 1 12.6518 -5.0598 1.1533
25 6 8.1308 -1.5096 -1.2479
26 1 7.6052 -1.9014 -2.1188
27 6 7.2752 -1.7127 0.0040
28 6 2.3408 -1.1292 0.0002
29 1 -0.3634 0.0000 1.0277
30 1 -0.3633 0.8899 -0.5139
31 1 -0.3633 -0.8901 -0.5138
32 1 1.9770 2.1145 -0.0004
33 1 6.5868 1.0409 0.3904
34 1 5.1634 0.9150 -0.6722
35 1 7.2302 1.7583 -1.8576
36 1 6.5729 0.2590 -2.5624
37 1 11.2189 -0.1785 -3.1610
38 1 11.0222 0.0485 -1.4076
39 1 11.4121 -2.3144 -1.7976
40 1 10.1594 -2.3630 -3.0645
41 1 11.2563 -5.3752 -1.5839
42 1 7.8250 -1.3780 0.8836
43 1 7.0200 -2.7673 0.1082
44 1 2.0266 -2.1625 -0.0003
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001074317417.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:25
Heat of formation + Delta-G solvation = -25.119097 kcal
Electronic energy + Delta-G solvation = -28084.750757 eV
Core-core repulsion = 24198.171307 eV
Total energy + Delta-G solvation = -3886.579450 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.89309 -39.94866 -38.48115 -36.18219 -34.68657 -34.37297 -31.91198 -31.43011
-30.64507 -29.87286 -27.73401 -26.93131 -25.42578 -23.94824 -23.12501 -21.91371
-21.29728 -20.91359 -19.75813 -19.23824 -17.36423 -16.83482 -16.74290 -16.43505
-15.74025 -15.42844 -15.12814 -14.92858 -14.48336 -14.06942 -13.81758 -13.74441
-13.61602 -13.42822 -13.29759 -13.07073 -12.90100 -12.87656 -12.59546 -12.30062
-11.94339 -11.75319 -11.34885 -11.03238 -10.92169 -10.80457 -10.65132 -10.27880
-10.23790 -10.12418 -10.00132 -9.83542 -9.58339 -8.99021 -8.77062 -8.54309
-8.36562 -6.63083 -5.86263 -3.40410 1.01496 2.16917 2.55108 3.11900
3.28143 3.33599 3.42234 3.44099 4.25057 4.40337 4.42359 4.58242
4.75119 4.93314 5.05937 5.21737 5.29854 5.35098 5.35996 5.41504
5.45357 5.52695 5.63160 5.69440 5.74676 5.75715 5.86407 5.92865
6.03077 6.08629 6.13766 6.24292 6.25427 6.29808 6.44561 6.62840
6.64382 6.79720 6.86310 7.04320 7.40109 7.50768 7.74082 7.86504
8.18162 8.36543 9.07669 9.69605 10.33801 11.20618
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.017084 B = 0.003831 C = 0.003277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1638.580518 B = 7306.413395 C = 8543.424995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C -0.192 4.192
3 C -0.024 4.024
4 O -0.156 6.156
5 C -0.063 4.063
6 C 0.596 3.404
7 O -0.516 6.516
8 N -0.601 5.601
9 C 0.101 3.899
10 C -0.123 4.123
11 C 0.076 3.924
12 H 0.053 0.947
13 O -0.388 6.388
14 C 0.040 3.960
15 C 0.146 3.854
16 N -0.584 5.584
17 C -0.268 4.268
18 H 0.067 0.933
19 C 0.017 3.983
20 N -0.891 5.891
21 Si 0.901 3.099
22 H -0.275 1.275
23 H -0.288 1.288
24 H -0.288 1.288
25 C 0.137 3.863
26 H 0.037 0.963
27 C 0.125 3.875
28 C -0.123 4.123
29 H 0.068 0.932
30 H 0.066 0.934
31 H 0.068 0.932
32 H 0.206 0.794
33 H 0.071 0.929
34 H 0.105 0.895
35 H 0.080 0.920
36 H 0.073 0.927
37 H 0.081 0.919
38 H 0.041 0.959
39 H 0.079 0.921
40 H 0.031 0.969
41 H 0.255 0.745
42 H 0.076 0.924
43 H 0.106 0.894
44 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.652 14.431 1.625 20.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.194 4.194
3 C -0.093 4.093
4 O -0.052 6.052
5 C -0.115 4.115
6 C 0.383 3.617
7 O -0.393 6.393
8 N -0.333 5.333
9 C -0.021 4.021
10 C -0.161 4.161
11 C 0.016 3.984
12 H 0.071 0.929
13 O -0.307 6.307
14 C -0.038 4.038
15 C 0.020 3.980
16 N -0.309 5.309
17 C -0.398 4.398
18 H 0.085 0.915
19 C -0.184 4.184
20 N -0.533 5.533
21 Si 0.730 3.270
22 H -0.200 1.200
23 H -0.214 1.214
24 H -0.214 1.214
25 C 0.029 3.971
26 H 0.055 0.945
27 C 0.004 3.996
28 C -0.144 4.144
29 H 0.087 0.913
30 H 0.085 0.915
31 H 0.087 0.913
32 H 0.223 0.777
33 H 0.090 0.910
34 H 0.123 0.877
35 H 0.099 0.901
36 H 0.091 0.909
37 H 0.099 0.901
38 H 0.060 0.940
39 H 0.097 0.903
40 H 0.049 0.951
41 H 0.065 0.935
42 H 0.094 0.906
43 H 0.124 0.876
44 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -14.336 13.877 1.493 20.008
hybrid contribution 0.457 -0.703 0.792 1.154
sum -13.878 13.174 2.285 19.272
Atomic orbital electron populations
1.20177 0.88795 1.02777 1.02231 1.20463 0.97574 0.92465 1.08876
1.24267 0.80754 0.99957 1.04314 1.84245 1.28351 1.21908 1.70714
1.22208 0.96263 0.80342 1.12684 1.16709 0.81056 0.86217 0.77690
1.90904 1.85232 1.12518 1.50680 1.48189 1.06115 1.10384 1.68607
1.22107 1.01631 0.80885 0.97468 1.21841 0.94756 1.01280 0.98251
1.22445 0.89562 0.96709 0.89636 0.92941 1.87742 1.23465 1.78182
1.41305 1.23295 0.83560 0.96969 0.99956 1.21326 0.94355 0.89837
0.92465 1.43912 1.06418 1.52267 1.28271 1.19032 1.31518 1.01153
0.88058 0.91540 1.25300 1.01230 0.95698 0.96169 1.70045 1.39571
1.23929 1.19730 0.86263 0.78649 0.79631 0.82458 1.19971 1.21425
1.21421 1.21320 0.88761 0.91437 0.95597 0.94500 1.21849 0.81957
0.97502 0.98270 1.21836 0.90553 1.00564 1.01397 0.91347 0.91548
0.91309 0.77732 0.91043 0.87721 0.90134 0.90854 0.90050 0.94048
0.90256 0.95064 0.93474 0.90609 0.87620 0.82353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.55 10.39 36.01 0.37 -0.18 16
2 C -0.19 -1.87 6.14 -104.93 -0.64 -2.52 16
3 C -0.02 -0.21 12.00 29.62 0.36 0.15 16
4 O -0.16 -1.80 7.24 5.01 0.04 -1.76 16
5 C -0.06 -0.90 6.76 -36.80 -0.25 -1.15 16
6 C 0.60 10.47 7.64 -12.86 -0.10 10.37 16
7 O -0.52 -10.85 16.28 5.19 0.08 -10.76 16
8 N -0.60 -10.17 2.98 -174.24 -0.52 -10.69 16
9 C 0.10 1.36 6.07 -3.67 -0.02 1.34 16
10 C -0.12 -1.78 5.82 -26.65 -0.16 -1.93 16
11 C 0.08 1.40 2.48 -26.63 -0.07 1.33 16
12 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16
13 O -0.39 -7.66 10.49 -35.23 -0.37 -8.03 16
14 C 0.04 0.78 6.95 37.26 0.26 1.04 16
15 C 0.15 3.45 5.41 -3.47 -0.02 3.43 16
16 N -0.58 -14.56 2.98 -164.34 -0.49 -15.05 16
17 C -0.27 -7.18 8.60 -15.06 -0.13 -7.31 16
18 H 0.07 1.74 6.52 -52.49 -0.34 1.40 16
19 C 0.02 0.47 4.93 -17.43 -0.09 0.39 16
20 N -0.89 -25.75 11.88 55.49 0.66 -25.09 16
21 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16
22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
25 C 0.14 2.96 3.03 -67.52 -0.20 2.76 16
26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16
27 C 0.13 2.52 4.60 -3.71 -0.02 2.50 16
28 C -0.12 -1.55 10.58 -39.39 -0.42 -1.97 16
29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
32 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16
33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
34 H 0.11 1.25 4.24 -53.12 -0.23 1.02 16
35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.08 2.00 6.93 -51.93 -0.36 1.64 16
40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
42 H 0.08 1.50 7.33 -51.93 -0.38 1.12 16
43 H 0.11 2.44 6.81 -51.93 -0.35 2.09 16
44 H 0.16 1.94 8.06 -52.49 -0.42 1.51 16
LS Contribution 349.97 15.07 5.27 5.27
Total: -1.00 -32.27 349.97 -7.76 -40.03
By element:
Atomic # 1 Polarization: 7.67 SS G_CDS: -6.29 Total: 1.38 kcal
Atomic # 6 Polarization: 9.37 SS G_CDS: -1.12 Total: 8.25 kcal
Atomic # 7 Polarization: -50.48 SS G_CDS: -0.35 Total: -50.83 kcal
Atomic # 8 Polarization: -20.30 SS G_CDS: -0.25 Total: -20.55 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -32.27 -7.76 -40.03 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074317417.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.912 kcal
(2) G-P(sol) polarization free energy of solvation -32.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.355 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds