Wall clock time and date at job start Tue Mar 31 2020 12:56:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.35124 * 126.44227 * 2 1
4 4 O 1.33928 * 108.76727 * 179.76945 * 3 2 1
5 5 C 1.34912 * 109.38521 * 0.37188 * 4 3 2
6 6 C 1.46658 * 125.98689 * 179.88561 * 5 4 3
7 7 O 1.21697 * 119.99777 * 172.43588 * 6 5 4
8 8 N 1.34772 * 120.00397 * 352.44258 * 6 5 4
9 9 C 1.46843 * 120.40497 * 353.05869 * 8 6 5
10 10 C 1.53366 * 109.25142 * 232.25918 * 9 8 6
11 11 C 1.52785 * 108.81456 * 306.17279 * 10 9 8
12 12 H 1.08992 * 109.34081 * 303.33813 * 11 10 9
13 13 O 1.42602 * 111.11900 * 182.55152 * 11 10 9
14 14 C 1.43140 * 113.63618 * 176.39352 * 13 11 10
15 15 C 1.53199 * 109.73873 * 61.69450 * 14 13 11
16 16 N 1.47360 * 108.79492 * 308.77868 * 15 14 13
17 17 C 1.36930 * 121.30131 * 230.22188 * 16 15 14
18 18 H 1.08000 * 120.00415 * 143.62003 * 17 16 15
19 19 C 1.38821 * 120.00210 * 323.61751 * 17 16 15
20 20 N 1.31617 * 119.99843 * 344.29525 * 19 17 16
21 21 Si 1.86796 * 119.99904 * 164.29075 * 19 17 16
22 22 H 1.48497 * 109.47475 * 0.02562 * 21 19 17
23 23 H 1.48502 * 109.47026 * 120.00349 * 21 19 17
24 24 H 1.48505 * 109.46888 * 240.00146 * 21 19 17
25 25 C 1.46876 * 117.39395 * 50.24171 * 16 15 14
26 26 H 1.09005 * 110.20703 * 67.98796 * 25 16 15
27 27 C 1.47121 * 120.41044 * 173.08247 * 8 6 5
28 28 C 1.36543 * 108.02523 * 359.62929 * 5 4 3
29 29 H 1.09003 * 109.47436 * 270.00219 * 1 2 3
30 30 H 1.08994 * 109.47164 * 30.00779 * 1 2 3
31 31 H 1.09007 * 109.46815 * 150.00341 * 1 2 3
32 32 H 1.08001 * 125.61882 * 359.97262 * 3 2 1
33 33 H 1.08995 * 109.50438 * 112.32409 * 9 8 6
34 34 H 1.09000 * 109.50400 * 352.19124 * 9 8 6
35 35 H 1.08999 * 109.57984 * 186.37157 * 10 9 8
36 36 H 1.09003 * 109.58237 * 65.97261 * 10 9 8
37 37 H 1.09004 * 109.42638 * 181.76881 * 14 13 11
38 38 H 1.08994 * 109.42976 * 301.60971 * 14 13 11
39 39 H 1.08998 * 109.58700 * 188.98959 * 15 14 13
40 40 H 1.08998 * 109.58625 * 68.57260 * 15 14 13
41 41 H 0.96997 * 120.00259 * 179.97438 * 20 19 17
42 42 H 1.08996 * 109.73474 * 246.41888 * 27 8 6
43 43 H 1.09004 * 109.72569 * 7.09454 * 27 8 6
44 44 H 1.07996 * 126.65029 * 180.18908 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3097 1.0870 0.0000
4 8 3.5857 0.6804 0.0051
5 6 3.6260 -0.6681 0.0002
6 6 4.8379 -1.4941 0.0010
7 8 4.7519 -2.7006 0.1350
8 7 6.0469 -0.9170 -0.1465
9 6 6.1543 0.5136 -0.4598
10 6 7.0548 0.6960 -1.6878
11 6 8.3862 -0.0082 -1.4314
12 1 8.8349 0.3884 -0.5207
13 8 9.2856 0.1805 -2.5219
14 6 10.5805 -0.3888 -2.3029
15 6 10.4551 -1.9048 -2.1208
16 7 9.4306 -2.1769 -1.0972
17 6 9.6804 -3.0191 -0.0468
18 1 9.2681 -2.8039 0.9279
19 6 10.4635 -4.1498 -0.2349
20 7 10.7088 -4.5854 -1.4524
21 14 11.1694 -5.0529 1.2401
22 1 10.7493 -4.3667 2.4882
23 1 10.6676 -6.4505 1.2513
24 1 12.6518 -5.0598 1.1533
25 6 8.1308 -1.5096 -1.2479
26 1 7.6052 -1.9014 -2.1188
27 6 7.2752 -1.7127 0.0040
28 6 2.3408 -1.1292 0.0002
29 1 -0.3634 0.0000 1.0277
30 1 -0.3633 0.8899 -0.5139
31 1 -0.3633 -0.8901 -0.5138
32 1 1.9770 2.1145 -0.0004
33 1 6.5868 1.0409 0.3904
34 1 5.1634 0.9150 -0.6722
35 1 7.2302 1.7583 -1.8576
36 1 6.5729 0.2590 -2.5624
37 1 11.2189 -0.1785 -3.1610
38 1 11.0222 0.0485 -1.4076
39 1 11.4121 -2.3144 -1.7976
40 1 10.1594 -2.3630 -3.0645
41 1 11.2563 -5.3752 -1.5839
42 1 7.8250 -1.3780 0.8836
43 1 7.0200 -2.7673 0.1082
44 1 2.0266 -2.1625 -0.0003
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001074317417.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:25
Heat of formation + Delta-G solvation = -46.996802 kcal
Electronic energy + Delta-G solvation = -28085.699446 eV
Core-core repulsion = 24198.171307 eV
Total energy + Delta-G solvation = -3887.528138 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.78286 -41.40018 -40.01611 -37.61588 -36.52666 -35.19048 -33.57216 -33.13020
-31.83955 -31.24246 -29.08912 -28.12354 -26.90974 -25.58227 -24.47432 -23.43063
-22.55544 -22.00425 -21.44217 -20.39074 -18.76809 -18.33707 -17.95855 -17.54575
-17.08319 -17.02259 -16.81961 -16.28144 -16.18482 -15.61858 -15.52183 -15.08204
-14.77714 -14.69492 -14.50705 -14.23719 -14.01911 -13.91332 -13.81221 -13.63536
-13.22384 -13.04138 -12.84286 -12.74736 -12.50009 -12.43548 -12.38809 -12.04353
-11.99562 -11.80443 -11.39557 -11.24797 -10.76816 -10.72091 -10.55665 -9.92309
-9.49183 -8.67358 -7.95204 -5.53632 -0.00154 1.35499 1.41738 1.43871
1.48025 1.54755 1.92944 2.06885 2.43599 2.81136 3.19559 3.37243
3.41693 3.78808 3.80608 3.93151 4.01650 4.07596 4.15360 4.18754
4.28951 4.36429 4.46070 4.51646 4.52490 4.63195 4.67456 4.75601
4.80343 4.91630 4.93086 4.98571 5.05855 5.06487 5.06774 5.15359
5.22183 5.36085 5.44733 5.55017 5.60651 5.85718 6.22869 6.25990
6.31969 6.84806 7.01580 7.65855 8.28037 9.09653
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.017084 B = 0.003831 C = 0.003277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1638.580518 B = 7306.413395 C = 8543.424995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C -0.206 4.206
3 C 0.008 3.992
4 O -0.156 6.156
5 C -0.097 4.097
6 C 0.591 3.409
7 O -0.569 6.569
8 N -0.602 5.602
9 C 0.102 3.898
10 C -0.114 4.114
11 C 0.082 3.918
12 H 0.062 0.938
13 O -0.391 6.391
14 C 0.053 3.947
15 C 0.150 3.850
16 N -0.602 5.602
17 C -0.271 4.271
18 H 0.070 0.930
19 C -0.038 4.038
20 N -0.929 5.929
21 Si 0.966 3.034
22 H -0.263 1.263
23 H -0.295 1.295
24 H -0.283 1.283
25 C 0.133 3.867
26 H 0.000 1.000
27 C 0.140 3.860
28 C -0.122 4.122
29 H 0.076 0.924
30 H 0.090 0.910
31 H 0.064 0.936
32 H 0.258 0.742
33 H 0.095 0.905
34 H 0.129 0.871
35 H 0.119 0.881
36 H 0.062 0.938
37 H 0.111 0.889
38 H 0.054 0.946
39 H 0.057 0.943
40 H -0.002 1.002
41 H 0.252 0.748
42 H 0.080 0.920
43 H 0.064 0.936
44 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.364 18.536 2.581 24.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.207 4.207
3 C -0.060 4.060
4 O -0.052 6.052
5 C -0.148 4.148
6 C 0.381 3.619
7 O -0.451 6.451
8 N -0.333 5.333
9 C -0.018 4.018
10 C -0.152 4.152
11 C 0.023 3.977
12 H 0.080 0.920
13 O -0.310 6.310
14 C -0.025 4.025
15 C 0.024 3.976
16 N -0.327 5.327
17 C -0.400 4.400
18 H 0.088 0.912
19 C -0.235 4.235
20 N -0.573 5.573
21 Si 0.793 3.207
22 H -0.187 1.187
23 H -0.222 1.222
24 H -0.209 1.209
25 C 0.026 3.974
26 H 0.018 0.982
27 C 0.018 3.982
28 C -0.143 4.143
29 H 0.095 0.905
30 H 0.109 0.891
31 H 0.083 0.917
32 H 0.274 0.726
33 H 0.113 0.887
34 H 0.146 0.854
35 H 0.137 0.863
36 H 0.080 0.920
37 H 0.129 0.871
38 H 0.073 0.927
39 H 0.076 0.924
40 H 0.016 0.984
41 H 0.061 0.939
42 H 0.099 0.901
43 H 0.082 0.918
44 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -16.060 18.044 2.450 24.280
hybrid contribution 0.818 -1.934 0.458 2.149
sum -15.242 16.111 2.908 22.368
Atomic orbital electron populations
1.20259 0.86530 1.03870 1.03128 1.20815 0.99137 0.91473 1.09299
1.25301 0.79085 1.01730 0.99931 1.84162 1.30059 1.20161 1.70834
1.21415 0.94803 0.81515 1.17067 1.17165 0.82068 0.86092 0.76527
1.90859 1.86175 1.14943 1.53118 1.48232 1.04877 1.11682 1.68507
1.22397 1.02979 0.78588 0.97859 1.21863 0.92220 1.02832 0.98295
1.22491 0.91420 0.93952 0.89871 0.92024 1.87751 1.23604 1.77594
1.42026 1.23169 0.84171 0.93196 1.01952 1.21216 0.92905 0.93009
0.90461 1.44218 1.08008 1.52446 1.28000 1.19348 1.30602 1.01275
0.88812 0.91232 1.26082 1.02098 0.96702 0.98616 1.70191 1.40805
1.24556 1.21740 0.85250 0.77847 0.77837 0.79774 1.18655 1.22181
1.20928 1.21444 0.87340 0.93801 0.94805 0.98241 1.21380 0.83227
0.95970 0.97639 1.22069 0.90890 1.01425 0.99935 0.90497 0.89081
0.91684 0.72585 0.88665 0.85434 0.86328 0.91966 0.87086 0.92723
0.92446 0.98421 0.93871 0.90147 0.91785 0.83242
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.80 10.39 71.24 0.74 -0.06 16
2 C -0.21 -3.35 6.14 -20.06 -0.12 -3.48 16
3 C 0.01 0.10 12.00 67.10 0.81 0.91 16
4 O -0.16 -3.07 7.24 -5.00 -0.04 -3.10 16
5 C -0.10 -2.67 6.76 24.07 0.16 -2.51 16
6 C 0.59 21.53 7.64 86.44 0.66 22.19 16
7 O -0.57 -25.78 16.28 -4.34 -0.07 -25.85 16
8 N -0.60 -20.59 2.98 -823.41 -2.45 -23.04 16
9 C 0.10 2.48 6.07 86.44 0.52 3.01 16
10 C -0.11 -3.00 5.82 30.65 0.18 -2.82 16
11 C 0.08 2.91 2.48 30.66 0.08 2.99 16
12 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16
13 O -0.39 -14.83 10.49 -148.98 -1.56 -16.39 16
14 C 0.05 2.00 6.95 72.05 0.50 2.50 16
15 C 0.15 7.36 5.41 86.28 0.47 7.82 16
16 N -0.60 -31.21 2.98 -673.86 -2.01 -33.22 16
17 C -0.27 -15.01 8.60 84.04 0.72 -14.29 16
18 H 0.07 3.75 6.52 -2.91 -0.02 3.73 16
19 C -0.04 -2.14 4.93 84.86 0.42 -1.72 16
20 N -0.93 -56.31 11.88 21.65 0.26 -56.05 16
21 Si 0.97 45.47 29.58 68.60 2.03 47.50 16
22 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16
23 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16
24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
25 C 0.13 6.00 3.03 45.05 0.14 6.14 16
26 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16
27 C 0.14 5.90 4.60 86.26 0.40 6.30 16
28 C -0.12 -3.00 10.58 22.39 0.24 -2.76 16
29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16
32 H 0.26 0.41 8.06 -2.91 -0.02 0.38 16
33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
34 H 0.13 2.59 4.24 -21.21 -0.09 2.50 16
35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16
36 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16
37 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16
38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
39 H 0.06 3.03 6.93 -2.39 -0.02 3.01 16
40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16
41 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16
42 H 0.08 3.25 7.33 -2.39 -0.02 3.24 16
43 H 0.06 3.21 6.81 -2.38 -0.02 3.19 16
44 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16
Total: -1.00 -76.71 349.97 2.99 -73.72
By element:
Atomic # 1 Polarization: 11.30 SS G_CDS: 0.93 Total: 12.23 kcal
Atomic # 6 Polarization: 18.31 SS G_CDS: 5.90 Total: 24.21 kcal
Atomic # 7 Polarization: -108.10 SS G_CDS: -4.21 Total: -112.31 kcal
Atomic # 8 Polarization: -43.68 SS G_CDS: -1.67 Total: -45.35 kcal
Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal
Total: -76.71 2.99 -73.72 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074317417.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.726 kcal
(2) G-P(sol) polarization free energy of solvation -76.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.984 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds