Wall clock time and date at job start Tue Mar 31 2020 12:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.55081 * 2 1 4 4 C 1.52999 * 117.49834 * 214.29461 * 2 1 3 5 5 C 1.52995 * 60.00040 * 252.51089 * 4 2 1 6 6 H 1.08997 * 117.51928 * 252.52118 * 5 4 2 7 7 C 1.50708 * 117.49945 * 107.48790 * 5 4 2 8 8 O 1.21284 * 119.99934 * 291.38086 * 7 5 4 9 9 N 1.34772 * 119.99780 * 111.37798 * 7 5 4 10 10 C 1.48148 * 127.83622 * 180.02562 * 9 7 5 11 11 C 1.54397 * 104.61441 * 219.56439 * 10 9 7 12 12 H 1.09002 * 110.33950 * 95.00218 * 11 10 9 13 13 C 1.53005 * 110.33979 * 217.25918 * 11 10 9 14 14 F 1.39898 * 109.46806 * 175.53902 * 13 11 10 15 15 F 1.39899 * 109.47083 * 295.54104 * 13 11 10 16 16 F 1.39901 * 109.46929 * 55.54177 * 13 11 10 17 17 C 1.54280 * 104.96082 * 336.13084 * 11 10 9 18 18 H 1.09002 * 110.34311 * 241.13076 * 17 11 10 19 19 N 1.46496 * 110.43163 * 118.91731 * 17 11 10 20 20 C 1.36933 * 120.00220 * 156.53273 * 19 17 11 21 21 H 1.08000 * 119.99982 * 359.97438 * 20 19 17 22 22 C 1.38816 * 120.00127 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99874 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47322 * 59.99858 * 24 22 20 26 26 H 1.48500 * 109.46786 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46878 * 299.99878 * 24 22 20 28 28 C 1.48142 * 127.84126 * 359.97438 * 9 7 5 29 29 H 1.08996 * 109.47082 * 274.33098 * 1 2 3 30 30 H 1.08998 * 109.46562 * 34.32756 * 1 2 3 31 31 H 1.09000 * 109.47279 * 154.32671 * 1 2 3 32 32 H 1.08996 * 109.47264 * 205.66545 * 3 2 1 33 33 H 1.08998 * 109.47343 * 325.67213 * 3 2 1 34 34 H 1.09008 * 109.46647 * 85.67314 * 3 2 1 35 35 H 1.08998 * 117.50356 * 145.02053 * 4 2 1 36 36 H 1.09009 * 117.49768 * 0.02562 * 4 2 1 37 37 H 1.08998 * 110.40441 * 338.34404 * 10 9 7 38 38 H 1.08994 * 110.41147 * 100.78167 * 10 9 7 39 39 H 0.97007 * 120.00040 * 336.53272 * 19 17 11 40 40 H 0.97007 * 119.99417 * 180.02562 * 23 22 20 41 41 H 1.09000 * 110.40716 * 21.65114 * 28 9 7 42 42 H 1.09001 * 110.51065 * 259.27262 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2688 7 6 1.3720 -2.1402 1.4614 8 8 0.1638 -2.0529 1.4018 9 7 1.9415 -3.1490 2.1502 10 6 1.2651 -4.2377 2.8931 11 6 2.1116 -4.4217 4.1712 12 1 1.6873 -3.8448 4.9929 13 6 2.1936 -5.9028 4.5462 14 9 3.0459 -6.0591 5.6445 15 9 0.9174 -6.3718 4.8756 16 9 2.6927 -6.6315 3.4612 17 6 3.5099 -3.8831 3.8037 18 1 4.2552 -4.6738 3.8904 19 7 3.8652 -2.7528 4.6652 20 6 5.1811 -2.4297 4.8629 21 1 5.9571 -3.0084 4.3839 22 6 5.5179 -1.3590 5.6796 23 7 4.5722 -0.6540 6.2637 24 14 7.3130 -0.9178 5.9486 25 1 7.9420 -0.5863 4.6450 26 1 7.4040 0.2555 6.8543 27 1 8.0200 -2.0717 6.5601 28 6 3.3859 -3.4212 2.3355 29 1 -0.3633 0.0776 1.0247 30 1 -0.3632 0.8487 -0.5795 31 1 -0.3634 -0.9262 -0.4452 32 1 3.1823 1.3087 -0.4451 33 1 1.5810 2.0742 -0.5795 34 1 2.2767 1.7416 1.0248 35 1 3.1716 -0.8756 -1.2681 36 1 1.6112 -1.8586 -1.2681 37 1 0.2467 -3.9466 3.1504 38 1 1.2619 -5.1548 2.3041 39 1 3.1683 -2.2332 5.0957 40 1 4.8076 0.0944 6.8342 41 1 3.9677 -2.5141 2.1719 42 1 3.7155 -4.2102 1.6595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099237949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:56 Heat of formation + Delta-G solvation = -147.756706 kcal Electronic energy + Delta-G solvation = -28604.072089 eV Core-core repulsion = 24170.317933 eV Total energy + Delta-G solvation = -4433.754156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.91852 -47.43088 -47.33213 -40.19491 -38.39660 -36.56852 -34.07882 -32.10853 -30.67947 -29.34816 -27.65266 -27.32885 -26.11530 -24.35221 -23.35801 -22.06884 -20.39019 -19.76586 -18.57278 -18.32559 -18.01274 -17.70069 -16.98073 -16.68950 -15.43014 -15.17053 -14.85056 -14.53007 -14.27361 -14.21987 -13.86229 -13.80757 -13.70332 -13.59774 -13.55930 -13.48466 -13.32640 -13.22835 -12.80986 -12.48499 -12.23813 -11.98930 -11.83127 -11.65303 -11.62059 -11.28935 -11.14903 -10.93604 -10.90476 -10.86575 -10.25070 -10.13348 -9.88560 -9.76389 -9.32849 -9.18691 -8.52825 -7.19628 -5.93588 -3.26229 2.66234 2.84797 3.16184 3.34423 3.39892 3.40778 3.82499 3.97624 4.08438 4.20482 4.46344 4.60055 4.71812 4.83540 4.91096 4.93261 5.15489 5.23552 5.28112 5.33866 5.46449 5.53965 5.64486 5.70029 5.71935 5.76021 5.91741 5.97700 5.98903 6.02979 6.08491 6.09836 6.15652 6.26618 6.30717 6.53497 6.60186 7.53670 7.76123 8.21423 8.39745 9.34313 9.83507 10.18985 11.27668 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.006117 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.245018 B = 4576.425258 C = 7312.614971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.148 4.148 5 C -0.179 4.179 6 H 0.129 0.871 7 C 0.571 3.429 8 O -0.546 6.546 9 N -0.608 5.608 10 C 0.118 3.882 11 C -0.166 4.166 12 H 0.128 0.872 13 C 0.464 3.536 14 F -0.173 7.173 15 F -0.187 7.187 16 F -0.184 7.184 17 C 0.178 3.822 18 H 0.076 0.924 19 N -0.709 5.709 20 C -0.255 4.255 21 H 0.074 0.926 22 C -0.003 4.003 23 N -0.926 5.926 24 Si 0.909 3.091 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.074 3.926 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.387 0.613 40 H 0.259 0.741 41 H 0.095 0.905 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 -4.710 -11.125 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C -0.174 4.174 4 C -0.186 4.186 5 C -0.199 4.199 6 H 0.146 0.854 7 C 0.361 3.639 8 O -0.424 6.424 9 N -0.341 5.341 10 C -0.006 4.006 11 C -0.187 4.187 12 H 0.146 0.854 13 C 0.409 3.591 14 F -0.154 7.154 15 F -0.169 7.169 16 F -0.165 7.165 17 C 0.065 3.935 18 H 0.094 0.906 19 N -0.350 5.350 20 C -0.385 4.385 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.739 3.261 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.210 1.210 28 C -0.052 4.052 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.713 -4.554 -11.157 13.336 hybrid contribution 0.987 0.059 0.648 1.182 sum -4.726 -4.494 -10.510 12.369 Atomic orbital electron populations 1.21333 0.90849 1.00990 1.02586 1.21569 0.95826 0.90665 1.01451 1.21395 0.99786 0.93679 1.02517 1.23190 1.02686 1.01552 0.91166 1.22313 1.02382 1.00064 0.95188 0.85365 1.19242 0.87447 0.79694 0.77548 1.90669 1.14523 1.74749 1.62473 1.48747 1.08676 1.25859 1.50847 1.22095 0.97123 0.91259 0.90103 1.23877 1.02689 0.90114 1.02034 0.85395 1.20303 0.73385 0.90598 0.74777 1.93234 1.70970 1.96423 1.54791 1.93169 1.40294 1.90638 1.92783 1.93151 1.87722 1.80401 1.55272 1.21047 0.90335 0.92335 0.89768 0.90575 1.42404 1.05995 1.32229 1.54331 1.19148 0.83442 1.11089 1.24816 0.90805 1.24773 0.97615 0.98164 0.99464 1.69655 1.31187 1.21553 1.34793 0.86256 0.84392 0.77724 0.77696 1.21088 1.21613 1.21019 1.23596 0.80528 1.02124 0.98950 0.91376 0.93535 0.91908 0.92299 0.91896 0.91657 0.87998 0.88581 0.88957 0.90430 0.77788 0.93153 0.88674 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 8.09 37.16 0.30 -1.05 16 2 C -0.09 -1.22 2.70 -154.51 -0.42 -1.64 16 3 C -0.12 -1.31 9.85 37.16 0.37 -0.95 16 4 C -0.15 -1.74 9.53 -26.73 -0.25 -2.00 16 5 C -0.18 -2.59 5.30 -91.77 -0.49 -3.07 16 6 H 0.13 1.94 7.06 -51.93 -0.37 1.57 16 7 C 0.57 9.50 7.68 -10.98 -0.08 9.42 16 8 O -0.55 -10.11 13.37 5.55 0.07 -10.03 16 9 N -0.61 -9.59 3.32 -169.29 -0.56 -10.15 16 10 C 0.12 1.69 6.38 -2.40 -0.02 1.68 16 11 C -0.17 -2.54 2.84 -89.21 -0.25 -2.79 16 12 H 0.13 2.07 7.66 -51.93 -0.40 1.67 16 13 C 0.46 6.80 2.53 37.16 0.09 6.89 16 14 F -0.17 -2.88 16.93 2.25 0.04 -2.84 16 15 F -0.19 -2.64 17.17 2.25 0.04 -2.60 16 16 F -0.18 -2.57 16.04 2.25 0.04 -2.54 16 17 C 0.18 3.12 2.99 -66.52 -0.20 2.92 16 18 H 0.08 1.35 7.35 -51.93 -0.38 0.97 16 19 N -0.71 -15.93 5.13 -52.06 -0.27 -16.20 16 20 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 23 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 24 Si 0.91 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.07 1.15 6.63 -2.40 -0.02 1.14 16 29 H 0.07 1.05 7.26 -51.93 -0.38 0.67 16 30 H 0.05 0.52 7.92 -51.93 -0.41 0.11 16 31 H 0.06 0.89 7.01 -51.93 -0.36 0.52 16 32 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 33 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 34 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 36 H 0.10 1.12 8.05 -51.92 -0.42 0.70 16 37 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 38 H 0.08 1.00 7.21 -51.93 -0.37 0.63 16 39 H 0.39 9.52 7.53 -40.82 -0.31 9.21 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.09 1.61 6.69 -51.93 -0.35 1.26 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -28.48 353.82 -6.61 -35.09 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.79 Total: 9.64 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.21 Total: 3.83 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.10 Total: -51.93 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.11 Total: -7.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.48 -6.61 -35.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099237949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.669 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds