Wall clock time and date at job start Tue Mar 31 2020 12:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.55081 * 2 1 4 4 C 1.52999 * 117.49834 * 214.29461 * 2 1 3 5 5 C 1.52995 * 60.00040 * 252.51089 * 4 2 1 6 6 H 1.08997 * 117.51928 * 252.52118 * 5 4 2 7 7 C 1.50708 * 117.49945 * 107.48790 * 5 4 2 8 8 O 1.21284 * 119.99934 * 291.38086 * 7 5 4 9 9 N 1.34772 * 119.99780 * 111.37798 * 7 5 4 10 10 C 1.48148 * 127.83622 * 180.02562 * 9 7 5 11 11 C 1.54397 * 104.61441 * 219.56439 * 10 9 7 12 12 H 1.09002 * 110.33950 * 95.00218 * 11 10 9 13 13 C 1.53005 * 110.33979 * 217.25918 * 11 10 9 14 14 F 1.39898 * 109.46806 * 175.53902 * 13 11 10 15 15 F 1.39899 * 109.47083 * 295.54104 * 13 11 10 16 16 F 1.39901 * 109.46929 * 55.54177 * 13 11 10 17 17 C 1.54280 * 104.96082 * 336.13084 * 11 10 9 18 18 H 1.09002 * 110.34311 * 241.13076 * 17 11 10 19 19 N 1.46496 * 110.43163 * 118.91731 * 17 11 10 20 20 C 1.36933 * 120.00220 * 156.53273 * 19 17 11 21 21 H 1.08000 * 119.99982 * 359.97438 * 20 19 17 22 22 C 1.38816 * 120.00127 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99874 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99894 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47322 * 59.99858 * 24 22 20 26 26 H 1.48500 * 109.46786 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46878 * 299.99878 * 24 22 20 28 28 C 1.48142 * 127.84126 * 359.97438 * 9 7 5 29 29 H 1.08996 * 109.47082 * 274.33098 * 1 2 3 30 30 H 1.08998 * 109.46562 * 34.32756 * 1 2 3 31 31 H 1.09000 * 109.47279 * 154.32671 * 1 2 3 32 32 H 1.08996 * 109.47264 * 205.66545 * 3 2 1 33 33 H 1.08998 * 109.47343 * 325.67213 * 3 2 1 34 34 H 1.09008 * 109.46647 * 85.67314 * 3 2 1 35 35 H 1.08998 * 117.50356 * 145.02053 * 4 2 1 36 36 H 1.09009 * 117.49768 * 0.02562 * 4 2 1 37 37 H 1.08998 * 110.40441 * 338.34404 * 10 9 7 38 38 H 1.08994 * 110.41147 * 100.78167 * 10 9 7 39 39 H 0.97007 * 120.00040 * 336.53272 * 19 17 11 40 40 H 0.97007 * 119.99417 * 180.02562 * 23 22 20 41 41 H 1.09000 * 110.40716 * 21.65114 * 28 9 7 42 42 H 1.09001 * 110.51065 * 259.27262 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2365 -1.1208 0.7653 6 1 3.1713 -0.8747 1.2688 7 6 1.3720 -2.1402 1.4614 8 8 0.1638 -2.0529 1.4018 9 7 1.9415 -3.1490 2.1502 10 6 1.2651 -4.2377 2.8931 11 6 2.1116 -4.4217 4.1712 12 1 1.6873 -3.8448 4.9929 13 6 2.1936 -5.9028 4.5462 14 9 3.0459 -6.0591 5.6445 15 9 0.9174 -6.3718 4.8756 16 9 2.6927 -6.6315 3.4612 17 6 3.5099 -3.8831 3.8037 18 1 4.2552 -4.6738 3.8904 19 7 3.8652 -2.7528 4.6652 20 6 5.1811 -2.4297 4.8629 21 1 5.9571 -3.0084 4.3839 22 6 5.5179 -1.3590 5.6796 23 7 4.5722 -0.6540 6.2637 24 14 7.3130 -0.9178 5.9486 25 1 7.9420 -0.5863 4.6450 26 1 7.4040 0.2555 6.8543 27 1 8.0200 -2.0717 6.5601 28 6 3.3859 -3.4212 2.3355 29 1 -0.3633 0.0776 1.0247 30 1 -0.3632 0.8487 -0.5795 31 1 -0.3634 -0.9262 -0.4452 32 1 3.1823 1.3087 -0.4451 33 1 1.5810 2.0742 -0.5795 34 1 2.2767 1.7416 1.0248 35 1 3.1716 -0.8756 -1.2681 36 1 1.6112 -1.8586 -1.2681 37 1 0.2467 -3.9466 3.1504 38 1 1.2619 -5.1548 2.3041 39 1 3.1683 -2.2332 5.0957 40 1 4.8076 0.0944 6.8342 41 1 3.9677 -2.5141 2.1719 42 1 3.7155 -4.2102 1.6595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099237949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:55 Heat of formation + Delta-G solvation = -163.419115 kcal Electronic energy + Delta-G solvation = -28604.751262 eV Core-core repulsion = 24170.317933 eV Total energy + Delta-G solvation = -4434.433329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.13776 -48.61104 -48.59076 -41.42797 -39.64451 -37.80328 -35.80663 -33.58967 -32.32201 -30.38100 -29.15211 -28.33158 -27.30523 -26.05479 -24.63475 -23.40126 -21.75422 -20.88361 -19.80393 -19.58336 -19.36803 -19.09747 -18.34419 -18.11430 -16.88331 -16.51694 -16.21033 -15.86731 -15.50761 -15.38236 -15.28625 -15.16722 -15.01663 -14.92827 -14.77971 -14.72139 -14.65720 -14.39755 -14.02234 -13.59502 -13.51976 -13.32965 -13.09071 -12.88386 -12.78596 -12.68954 -12.63153 -12.51510 -12.25402 -12.13202 -12.09592 -11.76792 -11.16713 -11.09851 -10.85904 -10.47479 -9.88849 -9.04590 -7.94886 -5.25896 1.41989 1.51018 1.52492 1.58215 1.61662 1.94376 2.53834 2.73966 2.76165 2.83871 2.97068 3.36763 3.43674 3.65060 3.69939 3.73302 3.86591 3.87087 3.99913 4.15436 4.19627 4.21666 4.48595 4.52000 4.63711 4.72967 4.78895 4.80830 4.81861 4.91529 5.02147 5.07146 5.09124 5.11452 5.21567 5.31794 5.53050 5.53810 6.23088 6.48139 7.11755 7.31922 7.98435 8.23350 9.27406 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.006117 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.245018 B = 4576.425258 C = 7312.614971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.121 4.121 5 C -0.201 4.201 6 H 0.119 0.881 7 C 0.563 3.437 8 O -0.571 6.571 9 N -0.611 5.611 10 C 0.120 3.880 11 C -0.157 4.157 12 H 0.116 0.884 13 C 0.473 3.527 14 F -0.185 7.185 15 F -0.181 7.181 16 F -0.175 7.175 17 C 0.173 3.827 18 H 0.081 0.919 19 N -0.721 5.721 20 C -0.242 4.242 21 H 0.085 0.915 22 C -0.066 4.066 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.274 1.274 26 H -0.302 1.302 27 H -0.279 1.279 28 C 0.085 3.915 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.082 0.918 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -5.595 -13.221 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.171 4.171 4 C -0.158 4.158 5 C -0.221 4.221 6 H 0.137 0.863 7 C 0.354 3.646 8 O -0.451 6.451 9 N -0.344 5.344 10 C -0.003 4.003 11 C -0.179 4.179 12 H 0.134 0.866 13 C 0.419 3.581 14 F -0.166 7.166 15 F -0.163 7.163 16 F -0.157 7.157 17 C 0.062 3.938 18 H 0.098 0.902 19 N -0.360 5.360 20 C -0.373 4.373 21 H 0.103 0.897 22 C -0.259 4.259 23 N -0.615 5.615 24 Si 0.797 3.203 25 H -0.200 1.200 26 H -0.229 1.229 27 H -0.205 1.205 28 C -0.040 4.040 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.922 -5.497 -13.293 15.203 hybrid contribution 0.676 0.241 1.262 1.452 sum -4.246 -5.256 -12.030 13.798 Atomic orbital electron populations 1.21245 0.91445 1.01425 1.01089 1.21726 0.95528 0.91544 1.01321 1.21402 1.00785 0.92942 1.01974 1.23290 1.03357 1.00226 0.88959 1.22288 1.02015 1.00856 0.96982 0.86343 1.19680 0.87452 0.79925 0.77533 1.90656 1.15581 1.75337 1.63534 1.48822 1.08823 1.26025 1.50698 1.22177 0.96601 0.91812 0.89682 1.23701 1.01408 0.90498 1.02253 0.86588 1.20053 0.73391 0.90122 0.74570 1.93216 1.71439 1.96448 1.55534 1.93184 1.39854 1.90490 1.92746 1.93170 1.87631 1.80128 1.54722 1.21238 0.91562 0.90904 0.90125 0.90158 1.42520 1.04817 1.33422 1.55284 1.19550 0.84805 1.10016 1.22933 0.89694 1.25492 1.00941 0.98977 1.00442 1.69813 1.32869 1.22391 1.36457 0.85301 0.80476 0.76913 0.77576 1.20003 1.22878 1.20546 1.23410 0.80402 1.02441 0.97729 0.94117 0.91293 0.92910 0.90935 0.90126 0.93292 0.85496 0.88250 0.89228 0.88142 0.79414 0.94116 0.89969 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 8.09 71.98 0.58 -1.91 16 2 C -0.10 -2.47 2.70 -52.18 -0.14 -2.61 16 3 C -0.11 -2.37 9.85 71.98 0.71 -1.66 16 4 C -0.12 -2.55 9.53 30.59 0.29 -2.25 16 5 C -0.20 -5.64 5.30 -11.54 -0.06 -5.70 16 6 H 0.12 3.55 7.06 -2.39 -0.02 3.54 16 7 C 0.56 18.51 7.68 87.66 0.67 19.18 16 8 O -0.57 -21.22 13.37 -3.04 -0.04 -21.26 16 9 N -0.61 -18.62 3.32 -807.89 -2.68 -21.29 16 10 C 0.12 3.29 6.38 86.54 0.55 3.85 16 11 C -0.16 -4.66 2.84 -9.88 -0.03 -4.69 16 12 H 0.12 3.78 7.66 -2.39 -0.02 3.76 16 13 C 0.47 13.11 2.53 71.98 0.18 13.29 16 14 F -0.18 -5.96 16.93 44.97 0.76 -5.20 16 15 F -0.18 -4.82 17.17 44.97 0.77 -4.04 16 16 F -0.18 -4.44 16.04 44.97 0.72 -3.72 16 17 C 0.17 5.86 2.99 45.91 0.14 6.00 16 18 H 0.08 2.69 7.35 -2.39 -0.02 2.68 16 19 N -0.72 -32.47 5.13 -318.61 -1.63 -34.11 16 20 C -0.24 -12.09 9.96 84.03 0.84 -11.25 16 21 H 0.09 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.07 -3.51 5.50 84.86 0.47 -3.05 16 23 N -0.97 -56.29 13.06 21.65 0.28 -56.00 16 24 Si 0.97 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.09 2.52 6.63 86.55 0.57 3.09 16 29 H 0.04 1.27 7.26 -2.39 -0.02 1.26 16 30 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 31 H 0.05 1.46 7.01 -2.39 -0.02 1.45 16 32 H 0.07 1.30 7.90 -2.39 -0.02 1.28 16 33 H 0.08 1.38 7.92 -2.39 -0.02 1.36 16 34 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.13 2.05 8.05 -2.39 -0.02 2.03 16 36 H 0.10 2.05 8.05 -2.38 -0.02 2.04 16 37 H 0.09 2.54 7.88 -2.39 -0.02 2.52 16 38 H 0.10 2.32 7.21 -2.39 -0.02 2.30 16 39 H 0.37 18.81 7.53 -92.70 -0.70 18.11 16 40 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 41 H 0.08 2.69 6.69 -2.39 -0.02 2.67 16 42 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -61.56 353.82 5.34 -56.22 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.36 Total: 31.60 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.78 Total: 12.29 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.03 Total: -111.40 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.04 Total: -21.26 kcal Atomic # 9 Polarization: -15.22 SS G_CDS: 2.25 Total: -12.96 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -61.56 5.34 -56.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099237949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.204 kcal (2) G-P(sol) polarization free energy of solvation -61.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds