Wall clock time and date at job start Tue Mar 31 2020 13:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00165 * 2 1 4 4 C 1.52999 * 109.47202 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47337 * 180.02562 * 4 3 2 6 6 C 1.34348 * 118.80594 * 84.55721 * 5 4 3 7 7 C 1.38072 * 120.35631 * 180.28802 * 6 5 4 8 8 C 1.47192 * 120.88465 * 179.70954 * 7 6 5 9 9 O 1.21654 * 120.00034 * 144.79711 * 8 7 6 10 10 N 1.34781 * 120.00396 * 324.80160 * 8 7 6 11 11 C 1.36928 * 119.99794 * 6.64773 * 10 8 7 12 12 H 1.08005 * 119.99917 * 311.07108 * 11 10 8 13 13 C 1.39001 * 120.00024 * 131.07669 * 11 10 8 14 14 N 1.31397 * 119.99759 * 156.58351 * 13 11 10 15 15 Si 1.86797 * 120.00083 * 336.58255 * 13 11 10 16 16 H 1.48503 * 109.47059 * 271.72357 * 15 13 11 17 17 H 1.48506 * 109.47041 * 31.72086 * 15 13 11 18 18 H 1.48496 * 109.47261 * 151.71874 * 15 13 11 19 19 C 1.46499 * 119.99790 * 186.64875 * 10 8 7 20 20 C 1.53000 * 117.49663 * 182.08498 * 19 10 8 21 21 C 1.52998 * 117.49651 * 113.42747 * 19 10 8 22 22 C 1.47131 * 118.22501 * 359.44538 * 7 6 5 23 23 O 1.22084 * 121.06858 * 180.25201 * 22 7 6 24 24 C 1.41650 * 117.86214 * 0.26828 * 22 7 6 25 25 C 1.34875 * 119.34980 * 0.02562 * 24 22 7 26 26 C 1.50693 * 119.09382 * 179.97438 * 25 24 22 27 27 H 1.08998 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46666 * 299.99990 * 1 2 3 29 29 H 1.08993 * 109.46840 * 59.99525 * 1 2 3 30 30 H 1.09000 * 109.47413 * 60.00190 * 3 2 1 31 31 H 1.08996 * 109.47176 * 300.00095 * 3 2 1 32 32 H 1.09005 * 109.47269 * 59.99705 * 4 3 2 33 33 H 1.09008 * 109.47420 * 300.00185 * 4 3 2 34 34 H 1.07999 * 119.82252 * 0.02562 * 6 5 4 35 35 H 0.97008 * 119.99673 * 179.97438 * 14 13 11 36 36 H 1.08998 * 115.54988 * 327.75632 * 19 10 8 37 37 H 1.09002 * 117.50085 * 0.02562 * 20 19 10 38 38 H 1.09001 * 117.49851 * 145.01546 * 20 19 10 39 39 H 1.09003 * 117.50258 * 214.97529 * 21 19 10 40 40 H 1.08998 * 117.50029 * 359.97438 * 21 19 10 41 41 H 1.08002 * 120.32414 * 179.97438 * 24 22 7 42 42 H 1.08998 * 109.47097 * 94.80393 * 26 25 24 43 43 H 1.08997 * 109.47278 * 214.80183 * 26 25 24 44 44 H 1.09002 * 109.47189 * 334.80363 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.2932 3.1589 1.1722 7 6 4.8460 4.4236 1.2095 8 6 5.0227 5.1337 2.4866 9 8 5.9888 5.8540 2.6535 10 7 4.1143 4.9858 3.4713 11 6 3.1022 4.0733 3.3376 12 1 2.5139 4.0482 2.4322 13 6 2.8317 3.1795 4.3672 14 7 1.6394 2.6371 4.4700 15 14 4.1634 2.7494 5.6045 16 1 4.9558 1.5996 5.0993 17 1 5.0569 3.9199 5.7971 18 1 3.5362 2.3870 6.9009 19 6 4.2099 5.8014 4.6845 20 6 3.1778 5.5524 5.7862 21 6 3.1003 6.8239 4.9375 22 6 5.2591 5.0401 -0.0610 23 8 5.7577 6.1542 -0.0879 24 6 5.0593 4.2997 -1.2519 25 6 4.5046 3.0723 -1.1820 26 6 4.2942 2.2899 -2.4526 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8568 0.6438 -0.8909 33 1 3.8576 0.6434 0.8891 34 1 3.9853 2.6802 2.0900 35 1 1.4508 2.0130 5.1883 36 1 5.2206 6.0687 4.9928 37 1 2.4279 4.7815 5.6085 38 1 3.5094 5.6562 6.8193 39 1 3.3809 7.7640 5.4127 40 1 2.2995 6.8902 4.2011 41 1 5.3476 4.7143 -2.2066 42 1 5.1404 1.6216 -2.6121 43 1 3.3788 1.7038 -2.3711 44 1 4.2112 2.9782 -3.2937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328655992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:20 Heat of formation + Delta-G solvation = -25.428800 kcal Electronic energy + Delta-G solvation = -28394.241708 eV Core-core repulsion = 24507.648828 eV Total energy + Delta-G solvation = -3886.592880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89970 -38.89573 -37.97585 -37.24325 -36.01617 -33.68125 -33.04414 -32.43740 -31.62375 -29.04163 -27.75812 -26.24325 -25.27701 -23.69374 -23.15935 -22.19528 -21.60364 -20.50567 -19.27886 -17.85480 -17.40435 -16.74862 -16.31074 -16.06360 -15.68702 -15.48942 -15.33580 -15.08287 -14.43851 -14.23232 -13.94354 -13.70079 -13.52247 -13.23240 -13.05952 -12.98140 -12.83772 -12.61327 -12.53885 -12.42098 -11.81068 -11.67464 -11.60226 -11.46512 -11.18806 -11.16573 -10.99726 -10.54002 -10.14499 -9.95005 -9.77660 -9.36756 -9.07845 -8.91822 -8.85015 -8.41881 -7.53093 -7.39931 -6.66677 -4.33178 1.49525 1.86999 2.59024 3.06249 3.17646 3.31765 3.74889 3.79080 4.05950 4.21449 4.40524 4.47462 4.55626 4.61570 4.84625 4.95369 5.06470 5.13435 5.24350 5.26503 5.30127 5.35073 5.46770 5.46987 5.60281 5.63342 5.73972 5.76070 5.80699 5.86414 5.92077 6.09452 6.24423 6.36848 6.38015 6.52200 6.81212 6.94497 6.95573 7.06919 7.13134 7.33170 7.37563 7.99687 8.15935 8.75079 8.83520 9.35036 9.73615 10.39084 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.006486 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.208482 B = 4315.984767 C = 6263.619009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.041 3.959 4 C 0.090 3.910 5 N -0.470 5.470 6 C 0.178 3.822 7 C -0.279 4.279 8 C 0.560 3.440 9 O -0.566 6.566 10 N -0.450 5.450 11 C -0.360 4.360 12 H 0.096 0.904 13 C 0.080 3.920 14 N -0.853 5.853 15 Si 0.862 3.138 16 H -0.280 1.280 17 H -0.244 1.244 18 H -0.282 1.282 19 C 0.087 3.913 20 C -0.201 4.201 21 C -0.187 4.187 22 C 0.408 3.592 23 O -0.506 6.506 24 C -0.282 4.282 25 C 0.155 3.845 26 C -0.127 4.127 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.202 0.798 35 H 0.277 0.723 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -9.046 -8.871 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C -0.037 4.037 4 C -0.032 4.032 5 N -0.159 5.159 6 C 0.051 3.949 7 C -0.288 4.288 8 C 0.350 3.650 9 O -0.447 6.447 10 N -0.171 5.171 11 C -0.486 4.486 12 H 0.114 0.886 13 C -0.129 4.129 14 N -0.486 5.486 15 Si 0.686 3.314 16 H -0.206 1.206 17 H -0.167 1.167 18 H -0.208 1.208 19 C -0.018 4.018 20 C -0.238 4.238 21 C -0.226 4.226 22 C 0.297 3.703 23 O -0.390 6.390 24 C -0.307 4.307 25 C 0.048 3.952 26 C -0.184 4.184 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.218 0.782 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.162 0.838 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.554 -8.566 -8.698 12.473 hybrid contribution -0.056 -0.194 0.801 0.826 sum -2.610 -8.760 -7.898 12.080 Atomic orbital electron populations 1.22760 0.80171 1.02715 1.00600 1.87743 1.20427 1.26980 1.95637 1.22900 0.92724 0.85573 1.02472 1.21895 0.92881 0.82120 1.06276 1.42749 1.51474 1.16612 1.05024 1.23714 0.89060 0.93317 0.88760 1.22250 1.13230 0.96617 0.96697 1.17627 0.81930 0.82098 0.83308 1.90674 1.30542 1.41876 1.81642 1.42927 1.25491 1.34128 1.14592 1.18872 1.11534 1.11941 1.06298 0.88642 1.25484 0.95680 0.94834 0.96907 1.69842 1.18582 1.28164 1.32022 0.87148 0.83401 0.80062 0.80762 1.20634 1.16738 1.20804 1.21571 0.94338 0.96967 0.88881 1.23580 1.04047 1.01537 0.94649 1.23233 1.03106 0.92890 1.03363 1.18253 0.77912 0.87051 0.87104 1.90730 1.39492 1.19924 1.88844 1.22119 1.11711 0.95688 1.01210 1.20253 0.94135 0.94120 0.86683 1.21152 1.03245 1.00570 0.93440 0.89574 0.93107 0.94194 0.90527 0.92902 0.87888 0.87672 0.78215 0.91282 0.87002 0.85587 0.89925 0.89854 0.88784 0.83835 0.89622 0.90406 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -4.71 10.70 -35.23 -0.38 -5.09 16 3 C 0.04 0.49 6.08 37.16 0.23 0.71 16 4 C 0.09 1.00 5.26 -4.04 -0.02 0.98 16 5 N -0.47 -6.64 2.58 -112.36 -0.29 -6.93 16 6 C 0.18 3.28 8.12 -16.51 -0.13 3.15 16 7 C -0.28 -6.27 5.68 -102.72 -0.58 -6.85 16 8 C 0.56 14.46 7.29 -12.62 -0.09 14.37 16 9 O -0.57 -16.37 16.03 -8.53 -0.14 -16.51 16 10 N -0.45 -10.96 2.25 -109.01 -0.25 -11.21 16 11 C -0.36 -8.52 5.89 -14.99 -0.09 -8.61 16 12 H 0.10 2.37 6.91 -52.48 -0.36 2.01 16 13 C 0.08 1.86 3.16 -17.45 -0.06 1.81 16 14 N -0.85 -20.39 13.95 55.50 0.77 -19.62 16 15 Si 0.86 18.98 25.25 -169.99 -4.29 14.69 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.24 -5.53 5.42 56.52 0.31 -5.22 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.09 2.00 4.06 -67.93 -0.28 1.72 16 20 C -0.20 -4.16 6.89 -26.69 -0.18 -4.35 16 21 C -0.19 -3.81 10.38 -26.70 -0.28 -4.09 16 22 C 0.41 9.15 6.94 -34.67 -0.24 8.91 16 23 O -0.51 -13.47 16.93 -8.92 -0.15 -13.62 16 24 C -0.28 -4.68 9.56 -39.47 -0.38 -5.05 16 25 C 0.15 2.04 6.64 -82.13 -0.55 1.49 16 26 C -0.13 -1.02 8.81 36.00 0.32 -0.71 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.57 7.69 -51.93 -0.40 0.17 16 32 H 0.10 0.84 6.12 -51.93 -0.32 0.53 16 33 H 0.10 1.16 8.05 -51.92 -0.42 0.75 16 34 H 0.20 3.87 5.44 -52.49 -0.29 3.59 16 35 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 36 H 0.11 2.60 7.75 -51.93 -0.40 2.20 16 37 H 0.13 2.87 4.79 -51.93 -0.25 2.62 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.14 2.06 8.02 -52.49 -0.42 1.64 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.54 6.09 -51.93 -0.32 0.22 16 44 H 0.09 0.62 7.99 -51.93 -0.41 0.20 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -33.16 355.41 -6.78 -39.94 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.20 Total: 8.05 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.22 Total: 4.94 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.24 Total: -37.75 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.66 Total: -35.22 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.29 Total: 14.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.16 -6.78 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328655992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.510 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds