Wall clock time and date at job start Tue Mar 31 2020 13:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00165 * 2 1 4 4 C 1.52999 * 109.47202 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47337 * 180.02562 * 4 3 2 6 6 C 1.34348 * 118.80594 * 84.55721 * 5 4 3 7 7 C 1.38072 * 120.35631 * 180.28802 * 6 5 4 8 8 C 1.47192 * 120.88465 * 179.70954 * 7 6 5 9 9 O 1.21654 * 120.00034 * 144.79711 * 8 7 6 10 10 N 1.34781 * 120.00396 * 324.80160 * 8 7 6 11 11 C 1.36928 * 119.99794 * 6.64773 * 10 8 7 12 12 H 1.08005 * 119.99917 * 311.07108 * 11 10 8 13 13 C 1.39001 * 120.00024 * 131.07669 * 11 10 8 14 14 N 1.31397 * 119.99759 * 156.58351 * 13 11 10 15 15 Si 1.86797 * 120.00083 * 336.58255 * 13 11 10 16 16 H 1.48503 * 109.47059 * 271.72357 * 15 13 11 17 17 H 1.48506 * 109.47041 * 31.72086 * 15 13 11 18 18 H 1.48496 * 109.47261 * 151.71874 * 15 13 11 19 19 C 1.46499 * 119.99790 * 186.64875 * 10 8 7 20 20 C 1.53000 * 117.49663 * 182.08498 * 19 10 8 21 21 C 1.52998 * 117.49651 * 113.42747 * 19 10 8 22 22 C 1.47131 * 118.22501 * 359.44538 * 7 6 5 23 23 O 1.22084 * 121.06858 * 180.25201 * 22 7 6 24 24 C 1.41650 * 117.86214 * 0.26828 * 22 7 6 25 25 C 1.34875 * 119.34980 * 0.02562 * 24 22 7 26 26 C 1.50693 * 119.09382 * 179.97438 * 25 24 22 27 27 H 1.08998 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46666 * 299.99990 * 1 2 3 29 29 H 1.08993 * 109.46840 * 59.99525 * 1 2 3 30 30 H 1.09000 * 109.47413 * 60.00190 * 3 2 1 31 31 H 1.08996 * 109.47176 * 300.00095 * 3 2 1 32 32 H 1.09005 * 109.47269 * 59.99705 * 4 3 2 33 33 H 1.09008 * 109.47420 * 300.00185 * 4 3 2 34 34 H 1.07999 * 119.82252 * 0.02562 * 6 5 4 35 35 H 0.97008 * 119.99673 * 179.97438 * 14 13 11 36 36 H 1.08998 * 115.54988 * 327.75632 * 19 10 8 37 37 H 1.09002 * 117.50085 * 0.02562 * 20 19 10 38 38 H 1.09001 * 117.49851 * 145.01546 * 20 19 10 39 39 H 1.09003 * 117.50258 * 214.97529 * 21 19 10 40 40 H 1.08998 * 117.50029 * 359.97438 * 21 19 10 41 41 H 1.08002 * 120.32414 * 179.97438 * 24 22 7 42 42 H 1.08998 * 109.47097 * 94.80393 * 26 25 24 43 43 H 1.08997 * 109.47278 * 214.80183 * 26 25 24 44 44 H 1.09002 * 109.47189 * 334.80363 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 4.2932 3.1589 1.1722 7 6 4.8460 4.4236 1.2095 8 6 5.0227 5.1337 2.4866 9 8 5.9888 5.8540 2.6535 10 7 4.1143 4.9858 3.4713 11 6 3.1022 4.0733 3.3376 12 1 2.5139 4.0482 2.4322 13 6 2.8317 3.1795 4.3672 14 7 1.6394 2.6371 4.4700 15 14 4.1634 2.7494 5.6045 16 1 4.9558 1.5996 5.0993 17 1 5.0569 3.9199 5.7971 18 1 3.5362 2.3870 6.9009 19 6 4.2099 5.8014 4.6845 20 6 3.1778 5.5524 5.7862 21 6 3.1003 6.8239 4.9375 22 6 5.2591 5.0401 -0.0610 23 8 5.7577 6.1542 -0.0879 24 6 5.0593 4.2997 -1.2519 25 6 4.5046 3.0723 -1.1820 26 6 4.2942 2.2899 -2.4526 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8568 0.6438 -0.8909 33 1 3.8576 0.6434 0.8891 34 1 3.9853 2.6802 2.0900 35 1 1.4508 2.0130 5.1883 36 1 5.2206 6.0687 4.9928 37 1 2.4279 4.7815 5.6085 38 1 3.5094 5.6562 6.8193 39 1 3.3809 7.7640 5.4127 40 1 2.2995 6.8902 4.2011 41 1 5.3476 4.7143 -2.2066 42 1 5.1404 1.6216 -2.6121 43 1 3.3788 1.7038 -2.3711 44 1 4.2112 2.9782 -3.2937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328655992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:19 Heat of formation + Delta-G solvation = -47.518039 kcal Electronic energy + Delta-G solvation = -28395.199569 eV Core-core repulsion = 24507.648828 eV Total energy + Delta-G solvation = -3887.550741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28076 -40.67005 -39.26167 -38.55444 -37.89037 -35.42148 -34.25472 -34.08397 -33.27428 -30.24414 -28.87049 -27.19482 -27.08433 -25.14557 -24.25814 -23.82667 -23.27176 -21.96200 -21.06959 -19.46552 -18.93313 -18.07495 -17.66095 -17.29646 -17.11871 -16.82856 -16.71329 -16.56632 -15.94318 -15.84901 -15.37181 -15.23831 -14.88976 -14.70521 -14.53496 -14.43842 -14.27771 -13.92813 -13.68139 -13.58885 -13.49022 -13.06478 -12.91987 -12.72804 -12.52702 -12.35582 -12.26908 -12.14974 -11.93886 -11.72388 -11.12031 -10.98798 -10.68415 -10.65428 -10.26865 -10.20751 -9.42937 -8.97051 -8.54599 -6.23726 0.08264 0.38806 1.26458 1.36853 1.37502 1.52056 1.95474 2.24385 2.46610 2.68667 2.76989 2.92535 3.26353 3.45836 3.63393 3.79973 3.89954 3.95997 4.00162 4.14844 4.15931 4.22849 4.27398 4.42778 4.49642 4.54067 4.58559 4.68292 4.72243 4.72935 4.76423 4.81030 4.85960 4.89409 5.02527 5.11499 5.15383 5.32456 5.41715 5.53226 5.80392 5.94915 6.04948 6.09258 6.27469 6.94026 7.15364 7.42546 7.83807 8.53515 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.006486 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.208482 B = 4315.984767 C = 6263.619009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.046 3.954 4 C 0.085 3.915 5 N -0.458 5.458 6 C 0.214 3.786 7 C -0.329 4.329 8 C 0.543 3.457 9 O -0.615 6.615 10 N -0.449 5.449 11 C -0.359 4.359 12 H 0.079 0.921 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.893 3.107 16 H -0.278 1.278 17 H -0.256 1.256 18 H -0.271 1.271 19 C 0.051 3.949 20 C -0.184 4.184 21 C -0.172 4.172 22 C 0.388 3.612 23 O -0.577 6.577 24 C -0.304 4.304 25 C 0.187 3.813 26 C -0.125 4.125 27 H 0.106 0.894 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.193 0.807 35 H 0.284 0.716 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.166 0.834 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -12.138 -10.414 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.032 4.032 4 C -0.035 4.035 5 N -0.144 5.144 6 C 0.083 3.917 7 C -0.338 4.338 8 C 0.335 3.665 9 O -0.500 6.500 10 N -0.170 5.170 11 C -0.485 4.485 12 H 0.096 0.904 13 C -0.135 4.135 14 N -0.501 5.501 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.180 1.180 18 H -0.196 1.196 19 C -0.053 4.053 20 C -0.221 4.221 21 C -0.210 4.210 22 C 0.283 3.717 23 O -0.467 6.467 24 C -0.327 4.327 25 C 0.079 3.921 26 C -0.181 4.181 27 H 0.124 0.876 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.125 0.875 34 H 0.209 0.791 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.184 0.816 42 H 0.135 0.865 43 H 0.119 0.881 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.856 -11.732 -10.250 16.049 hybrid contribution 0.176 0.581 1.266 1.404 sum -3.680 -11.151 -8.984 14.785 Atomic orbital electron populations 1.22929 0.79102 1.04120 1.00606 1.87724 1.21579 1.26592 1.95638 1.22769 0.93077 0.85691 1.01653 1.22250 0.92329 0.80078 1.08837 1.43097 1.49540 1.17451 1.04263 1.23308 0.86407 0.91676 0.90303 1.22160 1.17263 0.98601 0.95806 1.18276 0.81490 0.82034 0.84684 1.90605 1.32409 1.44282 1.82711 1.43024 1.24957 1.34168 1.14811 1.18638 1.11067 1.12706 1.06121 0.90358 1.25609 0.96250 0.94319 0.97322 1.69845 1.19141 1.28446 1.32674 0.86664 0.81967 0.79421 0.80203 1.20400 1.18020 1.19584 1.21742 0.94841 0.99176 0.89566 1.23546 1.02101 1.00976 0.95489 1.23268 1.01046 0.94002 1.02728 1.18939 0.77111 0.86812 0.88871 1.90675 1.43603 1.22736 1.89726 1.22041 1.14115 0.96869 0.99692 1.21012 0.89983 0.93077 0.88005 1.21410 1.05498 1.00965 0.90244 0.87555 0.94861 0.92448 0.94218 0.91031 0.83209 0.87455 0.79066 0.90609 0.88016 0.87253 0.87049 0.86768 0.90070 0.81627 0.86507 0.88094 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -8.30 10.70 -148.98 -1.59 -9.90 16 3 C 0.05 0.96 6.08 71.98 0.44 1.40 16 4 C 0.09 1.55 5.26 86.38 0.45 2.01 16 5 N -0.46 -11.88 2.58 -509.40 -1.32 -13.20 16 6 C 0.21 7.95 8.12 84.27 0.68 8.63 16 7 C -0.33 -15.59 5.68 -18.63 -0.11 -15.69 16 8 C 0.54 29.90 7.29 86.59 0.63 30.53 16 9 O -0.61 -38.30 16.03 8.95 0.14 -38.16 16 10 N -0.45 -22.87 2.25 -617.05 -1.39 -24.26 16 11 C -0.36 -17.47 5.89 84.08 0.50 -16.97 16 12 H 0.08 4.04 6.91 -2.91 -0.02 4.02 16 13 C 0.07 3.43 3.16 84.94 0.27 3.69 16 14 N -0.87 -41.09 13.95 21.67 0.30 -40.79 16 15 Si 0.89 38.52 25.25 68.60 1.73 40.25 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.26 -11.61 5.42 99.48 0.54 -11.07 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 C 0.05 2.41 4.06 44.99 0.18 2.59 16 20 C -0.18 -7.52 6.89 30.62 0.21 -7.31 16 21 C -0.17 -7.00 10.38 30.62 0.32 -6.68 16 22 C 0.39 18.35 6.94 25.45 0.18 18.53 16 23 O -0.58 -33.19 16.93 7.56 0.13 -33.06 16 24 C -0.30 -9.84 9.56 22.34 0.21 -9.62 16 25 C 0.19 4.33 6.64 41.20 0.27 4.60 16 26 C -0.12 -1.24 8.81 71.23 0.63 -0.61 16 27 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.24 7.69 -2.39 -0.02 1.23 16 32 H 0.15 1.47 6.12 -2.38 -0.01 1.46 16 33 H 0.11 2.03 8.05 -2.38 -0.02 2.01 16 34 H 0.19 7.54 5.44 -2.91 -0.02 7.52 16 35 H 0.28 12.63 8.31 -92.70 -0.77 11.86 16 36 H 0.10 4.95 7.75 -2.39 -0.02 4.93 16 37 H 0.11 4.92 4.79 -2.39 -0.01 4.90 16 38 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 40 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.17 4.53 8.02 -2.91 -0.02 4.50 16 42 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.10 0.66 6.09 -2.39 -0.01 0.64 16 44 H 0.11 0.83 7.99 -2.39 -0.02 0.81 16 Total: -1.00 -80.20 355.41 4.98 -75.22 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.85 Total: 27.05 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.12 Total: 16.83 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -2.40 Total: -78.24 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -1.32 Total: -81.11 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.73 Total: 40.25 kcal Total: -80.20 4.98 -75.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328655992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.702 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds