Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34524 * 125.78638 * 2 1 4 4 C 1.41381 * 106.83668 * 179.79036 * 3 2 1 5 5 C 1.34511 * 106.84515 * 0.37485 * 4 3 2 6 6 C 1.50704 * 125.78989 * 179.89547 * 5 4 3 7 7 N 1.46499 * 109.47090 * 89.70823 * 6 5 4 8 8 C 1.34775 * 119.99505 * 179.97438 * 7 6 5 9 9 O 1.21352 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.49448 * 119.99800 * 180.02562 * 8 7 6 11 11 O 1.21344 * 120.00308 * 353.23338 * 10 8 7 12 12 N 1.34784 * 120.00133 * 173.23049 * 10 8 7 13 13 C 1.46929 * 120.62828 * 351.35143 * 12 10 8 14 14 C 1.53191 * 108.89438 * 233.55930 * 13 12 10 15 15 C 1.53070 * 109.29330 * 305.58156 * 14 13 12 16 16 C 1.53040 * 109.66092 * 61.15257 * 15 14 13 17 17 H 1.09000 * 109.49788 * 58.65045 * 16 15 14 18 18 C 1.50699 * 109.49627 * 178.74544 * 16 15 14 19 19 H 1.07993 * 120.00318 * 359.84311 * 18 16 15 20 20 C 1.37881 * 120.00047 * 179.83697 * 18 16 15 21 21 N 1.31523 * 119.99840 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00310 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47250 * 60.00246 * 22 20 18 24 24 H 1.48503 * 109.47339 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46979 * 299.99914 * 22 20 18 26 26 C 1.46924 * 120.63092 * 171.37996 * 12 10 8 27 27 O 1.34301 * 125.79510 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47527 * 300.00518 * 1 2 3 30 30 H 1.09001 * 109.46879 * 60.00882 * 1 2 3 31 31 H 1.08002 * 126.57550 * 359.97438 * 3 2 1 32 32 H 1.07999 * 126.57673 * 180.23766 * 4 3 2 33 33 H 1.08995 * 109.46665 * 329.70968 * 6 5 4 34 34 H 1.09002 * 109.46302 * 209.70798 * 6 5 4 35 35 H 0.96995 * 120.00359 * 0.02562 * 7 6 5 36 36 H 1.09001 * 109.58364 * 353.42154 * 13 12 10 37 37 H 1.08998 * 109.58185 * 113.69820 * 13 12 10 38 38 H 1.09001 * 109.49476 * 65.38778 * 14 13 12 39 39 H 1.08999 * 109.49901 * 185.48778 * 14 13 12 40 40 H 1.09002 * 109.35068 * 301.12365 * 15 14 13 41 41 H 1.09002 * 109.44049 * 181.23616 * 15 14 13 42 42 H 0.96998 * 120.00395 * 179.97438 * 21 20 18 43 43 H 1.09006 * 109.57806 * 246.15416 * 26 12 10 44 44 H 1.09000 * 109.58866 * 6.43300 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0913 0.0000 4 6 3.6308 0.6322 0.0050 5 6 3.5814 -0.7120 -0.0007 6 6 4.7707 -1.6377 -0.0007 7 7 5.1559 -1.9377 1.3806 8 6 6.2012 -2.7520 1.6268 9 8 6.8231 -3.2370 0.7044 10 6 6.5939 -3.0586 3.0358 11 8 6.0531 -2.4810 3.9558 12 7 7.5487 -3.9768 3.2848 13 6 8.0783 -4.8182 2.2030 14 6 7.9591 -6.2889 2.6148 15 6 8.6462 -6.4926 3.9674 16 6 7.9571 -5.6330 5.0296 17 1 6.9039 -5.9068 5.0922 18 6 8.6166 -5.8596 6.3655 19 1 9.4429 -6.5499 6.4497 20 6 8.1651 -5.1857 7.4805 21 7 7.1585 -4.3454 7.3781 22 14 8.9829 -5.4660 9.1363 23 1 10.4178 -5.0940 9.0489 24 1 8.3159 -4.6292 10.1659 25 1 8.8647 -6.8983 9.5105 26 6 8.0791 -4.1557 4.6432 27 8 2.2925 -1.0893 -0.0005 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.9664 2.1205 -0.0004 32 1 4.5211 1.2435 0.0099 33 1 5.6041 -1.1584 -0.5143 34 1 4.5108 -2.5631 -0.5146 35 1 4.6582 -1.5510 2.1178 36 1 7.5048 -4.6461 1.2922 37 1 9.1254 -4.5715 2.0276 38 1 6.9065 -6.5589 2.6993 39 1 8.4372 -6.9171 1.8632 40 1 9.6936 -6.2014 3.8880 41 1 8.5819 -7.5428 4.2524 42 1 6.8405 -3.8715 8.1625 43 1 9.1271 -3.8568 4.6684 44 1 7.5079 -3.5446 5.3420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331564665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -46.395054 kcal Electronic energy + Delta-G solvation = -26729.150272 eV Core-core repulsion = 22841.648227 eV Total energy + Delta-G solvation = -3887.502045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.90494 -40.48144 -38.34923 -36.85104 -35.37013 -33.47226 -33.26334 -32.21924 -31.72250 -29.76439 -28.99577 -26.02202 -25.02488 -24.54816 -22.40764 -22.01290 -21.80257 -20.58713 -20.15019 -18.95219 -17.52880 -16.92329 -16.57719 -16.32104 -16.03010 -15.78552 -15.25684 -14.83009 -14.55564 -14.44747 -14.04378 -13.79953 -13.49061 -13.36886 -13.27629 -13.10439 -12.98238 -12.87973 -12.60158 -12.51080 -12.15917 -12.02009 -11.80723 -11.42415 -10.95858 -10.72598 -10.46423 -10.30077 -10.18599 -10.12976 -9.87994 -9.36680 -9.24446 -9.10974 -8.79937 -8.50698 -8.43892 -7.82289 -6.00694 -4.09511 1.25804 1.76349 2.21310 2.50559 2.88369 3.31951 3.37525 3.39113 3.61008 3.98016 4.20049 4.42245 4.56748 4.69684 4.73999 4.88007 5.08497 5.12550 5.21135 5.29044 5.34635 5.50858 5.59752 5.66268 5.68492 5.81949 5.84157 6.02813 6.21581 6.23689 6.36665 6.49727 6.59907 6.71200 6.84843 6.86237 6.98813 7.01767 7.17091 7.20116 7.59007 7.81845 7.90938 7.95874 8.15089 8.35552 8.57016 8.94288 9.55949 11.04505 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002742 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.453785 B =10210.307426 C =11193.519010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.002 4.002 3 C -0.217 4.217 4 C -0.176 4.176 5 C -0.041 4.041 6 C 0.203 3.797 7 N -0.704 5.704 8 C 0.513 3.487 9 O -0.516 6.516 10 C 0.495 3.505 11 O -0.519 6.519 12 N -0.569 5.569 13 C 0.072 3.928 14 C -0.134 4.134 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.030 0.970 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.108 3.892 27 O -0.168 6.168 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.416 0.584 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.049 0.951 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 8.797 -17.242 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C -0.237 4.237 4 C -0.196 4.196 5 C -0.091 4.091 6 C 0.080 3.920 7 N -0.359 5.359 8 C 0.296 3.704 9 O -0.394 6.394 10 C 0.275 3.725 11 O -0.396 6.396 12 N -0.301 5.301 13 C -0.051 4.051 14 C -0.172 4.172 15 C -0.150 4.150 16 C 0.022 3.978 17 H 0.048 0.952 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.012 4.012 27 O -0.065 6.065 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.392 8.573 -17.285 21.459 hybrid contribution 0.339 0.287 1.280 1.355 sum -9.052 8.860 -16.005 20.411 Atomic orbital electron populations 1.20352 0.84924 1.04282 1.03712 1.22563 0.94153 0.84119 1.04446 1.21598 0.92564 0.99614 1.09875 1.21704 0.98541 0.93683 1.05704 1.22152 0.83067 0.94375 1.09508 1.19630 0.90559 0.97717 0.84058 1.45925 1.32338 1.48861 1.08805 1.20798 0.80114 0.78656 0.90868 1.90484 1.52545 1.49732 1.46591 1.19736 0.82120 0.82587 0.88019 1.90784 1.52321 1.51442 1.45022 1.48435 1.36177 1.33213 1.12239 1.22676 1.00433 0.90099 0.91853 1.21967 1.01120 0.95520 0.98584 1.21661 0.99024 1.00307 0.94033 1.18953 0.96745 0.89547 0.92560 0.95193 1.21049 1.17380 1.25418 0.92039 0.92306 1.25067 0.94841 0.95052 0.99118 1.69876 1.25175 1.26759 1.30056 0.86632 0.79564 0.78165 0.83494 1.20234 1.21263 1.20271 1.22496 0.97610 1.02410 0.78643 1.83995 1.16164 1.35111 1.71215 0.90405 0.89398 0.89557 0.83222 0.83019 0.87810 0.89255 0.74678 0.85759 0.92125 0.92436 0.92054 0.93171 0.93042 0.92581 0.93288 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.42 36.00 0.38 -0.06 16 2 C 0.00 -0.02 7.32 -35.62 -0.26 -0.28 16 3 C -0.22 -1.98 10.81 -39.70 -0.43 -2.41 16 4 C -0.18 -1.73 10.81 -39.70 -0.43 -2.16 16 5 C -0.04 -0.44 6.69 -35.62 -0.24 -0.68 16 6 C 0.20 2.16 6.20 -5.19 -0.03 2.13 16 7 N -0.70 -9.43 5.54 -61.91 -0.34 -9.77 16 8 C 0.51 8.41 7.74 -11.59 -0.09 8.32 16 9 O -0.52 -8.61 13.18 5.50 0.07 -8.54 16 10 C 0.49 10.04 7.73 -11.58 -0.09 9.95 16 11 O -0.52 -12.01 15.93 5.50 0.09 -11.92 16 12 N -0.57 -11.89 2.97 -173.28 -0.52 -12.40 16 13 C 0.07 1.27 5.98 -3.71 -0.02 1.25 16 14 C -0.13 -2.35 6.09 -26.60 -0.16 -2.51 16 15 C -0.11 -2.31 5.10 -26.67 -0.14 -2.45 16 16 C 0.04 1.02 2.26 -91.66 -0.21 0.82 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -14.10 8.56 -34.44 -0.29 -14.39 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.71 5.30 -17.81 -0.09 1.62 16 21 N -0.88 -25.48 11.39 55.43 0.63 -24.84 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.11 2.63 5.41 -3.72 -0.02 2.61 16 27 O -0.17 -1.94 10.65 5.71 0.06 -1.88 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.42 5.63 7.95 -40.82 -0.32 5.30 16 36 H 0.13 2.13 4.31 -54.78 -0.24 1.89 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.12 3.45 5.13 -51.93 -0.27 3.18 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -31.59 364.21 -7.96 -39.54 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.29 Total: 6.40 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.13 Total: 1.75 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.23 Total: -47.02 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.22 Total: -22.34 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.59 -7.96 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.852 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds