Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34524 * 125.78638 * 2 1 4 4 C 1.41381 * 106.83668 * 179.79036 * 3 2 1 5 5 C 1.34511 * 106.84515 * 0.37485 * 4 3 2 6 6 C 1.50704 * 125.78989 * 179.89547 * 5 4 3 7 7 N 1.46499 * 109.47090 * 89.70823 * 6 5 4 8 8 C 1.34775 * 119.99505 * 179.97438 * 7 6 5 9 9 O 1.21352 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.49448 * 119.99800 * 180.02562 * 8 7 6 11 11 O 1.21344 * 120.00308 * 353.23338 * 10 8 7 12 12 N 1.34784 * 120.00133 * 173.23049 * 10 8 7 13 13 C 1.46929 * 120.62828 * 351.35143 * 12 10 8 14 14 C 1.53191 * 108.89438 * 233.55930 * 13 12 10 15 15 C 1.53070 * 109.29330 * 305.58156 * 14 13 12 16 16 C 1.53040 * 109.66092 * 61.15257 * 15 14 13 17 17 H 1.09000 * 109.49788 * 58.65045 * 16 15 14 18 18 C 1.50699 * 109.49627 * 178.74544 * 16 15 14 19 19 H 1.07993 * 120.00318 * 359.84311 * 18 16 15 20 20 C 1.37881 * 120.00047 * 179.83697 * 18 16 15 21 21 N 1.31523 * 119.99840 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00310 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47250 * 60.00246 * 22 20 18 24 24 H 1.48503 * 109.47339 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46979 * 299.99914 * 22 20 18 26 26 C 1.46924 * 120.63092 * 171.37996 * 12 10 8 27 27 O 1.34301 * 125.79510 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47527 * 300.00518 * 1 2 3 30 30 H 1.09001 * 109.46879 * 60.00882 * 1 2 3 31 31 H 1.08002 * 126.57550 * 359.97438 * 3 2 1 32 32 H 1.07999 * 126.57673 * 180.23766 * 4 3 2 33 33 H 1.08995 * 109.46665 * 329.70968 * 6 5 4 34 34 H 1.09002 * 109.46302 * 209.70798 * 6 5 4 35 35 H 0.96995 * 120.00359 * 0.02562 * 7 6 5 36 36 H 1.09001 * 109.58364 * 353.42154 * 13 12 10 37 37 H 1.08998 * 109.58185 * 113.69820 * 13 12 10 38 38 H 1.09001 * 109.49476 * 65.38778 * 14 13 12 39 39 H 1.08999 * 109.49901 * 185.48778 * 14 13 12 40 40 H 1.09002 * 109.35068 * 301.12365 * 15 14 13 41 41 H 1.09002 * 109.44049 * 181.23616 * 15 14 13 42 42 H 0.96998 * 120.00395 * 179.97438 * 21 20 18 43 43 H 1.09006 * 109.57806 * 246.15416 * 26 12 10 44 44 H 1.09000 * 109.58866 * 6.43300 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0913 0.0000 4 6 3.6308 0.6322 0.0050 5 6 3.5814 -0.7120 -0.0007 6 6 4.7707 -1.6377 -0.0007 7 7 5.1559 -1.9377 1.3806 8 6 6.2012 -2.7520 1.6268 9 8 6.8231 -3.2370 0.7044 10 6 6.5939 -3.0586 3.0358 11 8 6.0531 -2.4810 3.9558 12 7 7.5487 -3.9768 3.2848 13 6 8.0783 -4.8182 2.2030 14 6 7.9591 -6.2889 2.6148 15 6 8.6462 -6.4926 3.9674 16 6 7.9571 -5.6330 5.0296 17 1 6.9039 -5.9068 5.0922 18 6 8.6166 -5.8596 6.3655 19 1 9.4429 -6.5499 6.4497 20 6 8.1651 -5.1857 7.4805 21 7 7.1585 -4.3454 7.3781 22 14 8.9829 -5.4660 9.1363 23 1 10.4178 -5.0940 9.0489 24 1 8.3159 -4.6292 10.1659 25 1 8.8647 -6.8983 9.5105 26 6 8.0791 -4.1557 4.6432 27 8 2.2925 -1.0893 -0.0005 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.9664 2.1205 -0.0004 32 1 4.5211 1.2435 0.0099 33 1 5.6041 -1.1584 -0.5143 34 1 4.5108 -2.5631 -0.5146 35 1 4.6582 -1.5510 2.1178 36 1 7.5048 -4.6461 1.2922 37 1 9.1254 -4.5715 2.0276 38 1 6.9065 -6.5589 2.6993 39 1 8.4372 -6.9171 1.8632 40 1 9.6936 -6.2014 3.8880 41 1 8.5819 -7.5428 4.2524 42 1 6.8405 -3.8715 8.1625 43 1 9.1271 -3.8568 4.6684 44 1 7.5079 -3.5446 5.3420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331564665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -66.964949 kcal Electronic energy + Delta-G solvation = -26730.042249 eV Core-core repulsion = 22841.648227 eV Total energy + Delta-G solvation = -3888.394022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.65001 -41.93476 -39.84565 -38.52652 -36.53319 -35.16721 -34.18377 -33.48911 -32.93301 -31.58787 -29.85366 -27.58556 -26.81200 -25.57532 -23.80359 -23.47258 -22.79011 -21.70328 -21.26155 -20.54150 -18.98787 -18.32087 -18.09564 -17.41236 -17.30233 -17.08840 -16.68270 -16.40129 -15.92359 -15.69885 -15.38066 -15.08515 -14.77949 -14.64241 -14.49343 -14.29562 -13.94284 -13.81031 -13.79174 -13.72303 -13.48673 -13.27435 -13.03307 -12.84330 -12.67288 -12.53786 -12.28109 -12.16370 -11.75052 -11.63878 -11.15875 -10.98431 -10.92367 -10.53974 -10.50505 -10.17009 -9.55679 -9.37018 -8.10960 -6.28054 0.31930 0.45281 1.31572 1.42530 1.44059 1.51954 1.66684 1.87659 2.11069 2.41951 2.60696 3.16663 3.28577 3.48638 3.92088 4.05283 4.12764 4.17888 4.20585 4.33249 4.39581 4.56249 4.59531 4.69378 4.71991 4.77831 4.80829 4.82142 4.84593 5.02267 5.06259 5.10812 5.20855 5.23520 5.24333 5.33011 5.47598 5.56245 5.57233 5.83790 5.90367 5.95229 6.13357 6.29269 6.40263 6.64960 6.83240 6.96035 7.41772 8.92479 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002742 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.453785 B =10210.307426 C =11193.519010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.010 4.010 3 C -0.229 4.229 4 C -0.176 4.176 5 C -0.063 4.063 6 C 0.206 3.794 7 N -0.690 5.690 8 C 0.525 3.475 9 O -0.516 6.516 10 C 0.485 3.515 11 O -0.557 6.557 12 N -0.575 5.575 13 C 0.071 3.929 14 C -0.126 4.126 15 C -0.107 4.107 16 C 0.039 3.961 17 H -0.011 1.011 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.011 3.989 21 N -0.914 5.914 22 Si 0.959 3.041 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.270 1.270 26 C 0.120 3.880 27 O -0.190 6.190 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.171 0.829 32 H 0.167 0.833 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.415 0.585 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.047 0.953 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 8.961 -18.987 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C -0.248 4.248 4 C -0.196 4.196 5 C -0.112 4.112 6 C 0.084 3.916 7 N -0.344 5.344 8 C 0.307 3.693 9 O -0.394 6.394 10 C 0.268 3.732 11 O -0.437 6.437 12 N -0.307 5.307 13 C -0.050 4.050 14 C -0.164 4.164 15 C -0.144 4.144 16 C 0.019 3.981 17 H 0.007 0.993 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.553 5.553 22 Si 0.784 3.216 23 H -0.192 1.192 24 H -0.214 1.214 25 H -0.195 1.195 26 C -0.001 4.001 27 O -0.087 6.087 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.189 0.811 32 H 0.184 0.816 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.156 0.844 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.087 8.730 -19.079 22.865 hybrid contribution 0.150 0.292 1.789 1.819 sum -8.937 9.022 -17.291 21.453 Atomic orbital electron populations 1.20538 0.82581 1.04833 1.05322 1.23323 0.95628 0.83759 1.03326 1.21945 0.92268 1.00694 1.09871 1.22025 0.99565 0.93564 1.04404 1.22164 0.82978 0.94732 1.11338 1.19807 0.91374 0.98333 0.82039 1.45929 1.30828 1.47278 1.10323 1.19853 0.81166 0.79680 0.88618 1.90468 1.52975 1.50332 1.45653 1.20479 0.81298 0.81706 0.89735 1.90757 1.53490 1.52608 1.46811 1.48462 1.36475 1.34054 1.11694 1.22919 1.01399 0.89601 0.91035 1.21942 1.00620 0.96084 0.97780 1.21556 0.99190 0.99368 0.94309 1.18897 0.94581 0.90857 0.93722 0.99325 1.21458 1.17425 1.25242 0.93342 0.91878 1.25893 0.95354 0.94762 1.02872 1.70063 1.26720 1.27779 1.30692 0.85595 0.78826 0.78210 0.78948 1.19194 1.21370 1.19470 1.21963 0.96746 1.01246 0.80158 1.83981 1.16674 1.36317 1.71761 0.90399 0.88094 0.87483 0.81105 0.81571 0.85941 0.88723 0.74791 0.84427 0.90634 0.93380 0.87975 0.92318 0.92756 0.92994 0.93508 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.42 71.24 0.74 0.01 16 2 C -0.01 -0.17 7.32 24.83 0.18 0.01 16 3 C -0.23 -3.80 10.81 22.19 0.24 -3.56 16 4 C -0.18 -3.19 10.81 22.19 0.24 -2.95 16 5 C -0.06 -1.28 6.69 24.83 0.17 -1.12 16 6 C 0.21 4.08 6.20 85.63 0.53 4.61 16 7 N -0.69 -17.99 5.54 -468.14 -2.59 -20.59 16 8 C 0.53 16.85 7.74 87.27 0.68 17.53 16 9 O -0.52 -16.23 13.18 -3.25 -0.04 -16.28 16 10 C 0.49 20.09 7.73 87.27 0.67 20.77 16 11 O -0.56 -26.97 15.93 -3.23 -0.05 -27.02 16 12 N -0.58 -24.33 2.97 -820.49 -2.44 -26.77 16 13 C 0.07 2.41 5.98 86.36 0.52 2.93 16 14 C -0.13 -4.18 6.09 30.68 0.19 -4.00 16 15 C -0.11 -4.29 5.10 30.63 0.16 -4.13 16 16 C 0.04 1.98 2.26 -11.47 -0.03 1.95 16 17 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 18 C -0.54 -29.58 8.56 25.60 0.22 -29.36 16 19 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 20 C 0.01 0.60 5.30 84.65 0.45 1.05 16 21 N -0.91 -54.99 11.39 21.45 0.24 -54.74 16 22 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.12 6.06 5.41 86.36 0.47 6.52 16 27 O -0.19 -4.24 10.65 -2.47 -0.03 -4.27 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.42 11.25 7.95 -92.71 -0.74 10.51 16 36 H 0.14 4.39 4.31 -47.53 -0.21 4.19 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.08 4.99 5.13 -2.39 -0.01 4.98 16 Total: -1.00 -70.78 364.21 2.63 -68.15 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.09 Total: 25.19 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.42 Total: 10.27 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.79 Total: -102.10 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -0.12 Total: -47.56 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.78 2.63 -68.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.188 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds