Wall clock time and date at job start Tue Mar 31 2020 13:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47520 * 2 1 4 4 C 1.34783 * 119.99830 * 62.00989 * 3 2 1 5 5 O 1.21279 * 119.99940 * 359.73182 * 4 3 2 6 6 C 1.50693 * 120.00138 * 179.72435 * 4 3 2 7 7 H 1.09002 * 109.46830 * 40.00068 * 6 4 3 8 8 N 1.46896 * 109.47149 * 160.00332 * 6 4 3 9 9 C 1.52997 * 109.47588 * 280.00507 * 6 4 3 10 10 C 1.52998 * 109.47378 * 174.99760 * 9 6 4 11 11 C 1.50705 * 109.46964 * 180.02562 * 10 9 6 12 12 H 1.08002 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99756 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00273 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00023 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47530 * 59.99350 * 15 13 11 17 17 H 1.48503 * 109.47450 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47054 * 299.99815 * 15 13 11 19 19 C 1.50707 * 109.46770 * 119.99972 * 2 1 3 20 20 O 1.20825 * 120.00195 * 25.00252 * 19 2 1 21 21 O 1.34227 * 119.99715 * 204.99753 * 19 2 1 22 22 C 1.50700 * 109.47281 * 239.99786 * 2 1 3 23 23 C 1.38237 * 119.99968 * 274.03773 * 22 2 1 24 24 C 1.38245 * 119.99620 * 179.78682 * 23 22 2 25 25 C 1.38227 * 119.99953 * 0.44300 * 24 23 22 26 26 C 1.38238 * 120.00061 * 359.80921 * 25 24 23 27 27 C 1.38232 * 119.99818 * 94.31135 * 22 2 1 28 28 H 1.08999 * 109.46443 * 60.00367 * 1 2 3 29 29 H 1.08998 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46860 * 300.00097 * 1 2 3 31 31 H 0.96994 * 120.00646 * 241.73824 * 3 2 1 32 32 H 1.00897 * 111.00250 * 60.00361 * 8 6 4 33 33 H 1.00901 * 110.99949 * 183.95774 * 8 6 4 34 34 H 1.09001 * 109.46899 * 294.99974 * 9 6 4 35 35 H 1.09008 * 109.47179 * 54.99348 * 9 6 4 36 36 H 1.08995 * 109.47396 * 299.99583 * 10 9 6 37 37 H 1.08998 * 109.47036 * 60.00108 * 10 9 6 38 38 H 0.96997 * 120.00439 * 180.02562 * 14 13 11 39 39 H 0.96702 * 117.00116 * 180.02562 * 21 19 2 40 40 H 1.07992 * 120.00424 * 359.97438 * 23 22 2 41 41 H 1.08003 * 119.99466 * 180.27639 * 24 23 22 42 42 H 1.07997 * 120.00116 * 179.83885 * 25 24 23 43 43 H 1.08006 * 120.00030 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00168 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 1.7266 2.1991 1.0307 5 8 1.0557 1.7932 1.9559 6 6 2.2342 3.6180 1.0338 7 1 2.1582 4.0332 0.0288 8 7 1.4276 4.4246 1.9592 9 6 3.6965 3.6357 1.4835 10 6 4.2486 5.0578 1.3675 11 6 5.6892 5.0750 1.8099 12 1 6.1633 4.1629 2.1410 13 6 6.4015 6.2554 1.7929 14 7 5.8240 7.3662 1.3901 15 14 8.1873 6.2767 2.3405 16 1 8.9809 5.3662 1.4766 17 1 8.7232 7.6571 2.2281 18 1 8.2776 5.8235 3.7519 19 6 2.0323 -0.7104 1.2305 20 8 1.3396 -1.5363 1.7764 21 8 3.2493 -0.4258 1.7200 22 6 2.0324 -0.7104 -1.2304 23 6 2.1834 -2.0845 -1.2219 24 6 2.6400 -2.7366 -2.3522 25 6 2.9544 -2.0138 -3.4876 26 6 2.8084 -0.6391 -3.4943 27 6 2.3477 0.0125 -2.3656 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5551 1.7059 -0.7398 32 1 1.4816 4.0598 2.8984 33 1 1.7064 5.3940 1.9313 34 1 3.7620 3.3038 2.5197 35 1 4.2795 2.9668 0.8502 36 1 4.1832 5.3897 0.3314 37 1 3.6657 5.7266 2.0008 38 1 6.3252 8.1966 1.3778 39 1 3.5281 -0.9075 2.5108 40 1 1.9417 -2.6489 -0.3335 41 1 2.7537 -3.8107 -2.3470 42 1 3.3136 -2.5229 -4.3697 43 1 3.0536 -0.0743 -4.3817 44 1 2.2335 1.0865 -2.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592994265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:14 Heat of formation + Delta-G solvation = -105.626912 kcal Electronic energy + Delta-G solvation = -27484.616724 eV Core-core repulsion = 23594.546194 eV Total energy + Delta-G solvation = -3890.070531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36990 -39.37651 -39.24003 -36.29692 -35.94762 -35.25164 -32.88103 -32.02704 -31.17445 -29.90762 -29.63596 -26.62898 -25.50444 -24.04854 -23.17153 -22.59003 -20.99246 -20.18912 -19.80937 -18.30259 -18.04875 -17.17476 -16.88983 -16.20724 -15.98740 -15.38886 -14.98271 -14.82324 -14.77548 -14.56174 -14.39188 -14.08473 -13.69578 -13.61412 -13.25366 -13.12660 -13.00829 -12.63609 -12.38930 -12.23076 -12.10030 -11.73912 -11.59007 -11.53429 -11.38603 -11.09711 -10.92715 -10.74357 -10.67633 -10.00044 -9.93271 -9.42712 -9.32135 -9.27784 -9.24066 -9.06042 -8.44865 -8.23336 -6.09538 -4.12594 0.90075 1.03873 2.05780 2.65612 2.91457 3.06337 3.27797 3.32719 3.35195 3.43578 4.08275 4.38518 4.54368 4.64872 4.71763 4.78895 4.89361 5.09576 5.13709 5.14813 5.25132 5.26715 5.50128 5.52389 5.54617 5.59742 5.66761 5.72610 5.99816 6.06790 6.10451 6.16437 6.27548 6.30481 6.44341 6.51252 6.59720 6.86046 7.31709 7.49418 7.54613 7.62007 7.82410 7.86085 7.87940 8.28265 8.31253 8.93133 9.52345 11.01347 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003409 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.508218 B = 8211.984223 C = 8986.013102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.238 3.762 3 N -0.722 5.722 4 C 0.532 3.468 5 O -0.529 6.529 6 C 0.077 3.923 7 H 0.098 0.902 8 N -0.830 5.830 9 C -0.136 4.136 10 C 0.025 3.975 11 C -0.524 4.524 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.492 3.508 20 O -0.510 6.510 21 O -0.501 6.501 22 C -0.089 4.089 23 C -0.109 4.109 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.104 4.104 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.408 0.592 32 H 0.346 0.654 33 H 0.355 0.645 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.409 0.591 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 -17.540 -9.826 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.149 3.851 3 N -0.380 5.380 4 C 0.320 3.680 5 O -0.404 6.404 6 C -0.038 4.038 7 H 0.116 0.884 8 N -0.362 5.362 9 C -0.176 4.176 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.332 3.668 20 O -0.397 6.397 21 O -0.312 6.312 22 C -0.090 4.090 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.122 4.122 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.246 0.754 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.267 0.733 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.007 -17.843 -9.807 22.264 hybrid contribution 2.506 0.089 0.956 2.684 sum -6.501 -17.754 -8.851 20.876 Atomic orbital electron populations 1.22144 0.89711 1.04131 1.04724 1.18814 0.95864 0.82028 0.88349 1.46223 1.56519 1.09935 1.25285 1.21023 0.78215 0.87962 0.80826 1.90644 1.38026 1.76488 1.35201 1.21453 0.93609 0.89232 0.99469 0.88413 1.58744 1.58417 1.06783 1.12304 1.22375 0.91945 1.02446 1.00816 1.19100 0.95791 0.88976 0.97360 1.21141 0.96501 0.94408 1.44163 0.92744 1.25000 0.98365 0.95640 0.95237 1.69932 1.36876 0.99222 1.47209 0.86651 0.84993 0.77047 0.79286 1.20211 1.21218 1.20233 1.23357 0.78872 0.79784 0.84745 1.90692 1.56919 1.33273 1.58862 1.84578 1.34297 1.65471 1.46808 1.19402 1.01583 0.94112 0.93862 1.21066 0.99062 0.93348 0.99271 1.21129 0.98904 1.00148 0.92866 1.21261 0.99261 0.94359 0.98299 1.21179 0.98864 0.94685 0.98174 1.20924 0.98721 1.00140 0.92413 0.90652 0.90426 0.89223 0.75441 0.84099 0.82895 0.92632 0.92318 0.96325 0.96425 0.92821 0.73279 0.85669 0.85558 0.85643 0.85236 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 7.94 37.16 0.30 -1.56 16 2 C 0.24 3.02 0.86 -134.12 -0.12 2.90 16 3 N -0.72 -9.32 4.69 -49.77 -0.23 -9.55 16 4 C 0.53 8.49 6.35 -10.99 -0.07 8.42 16 5 O -0.53 -9.87 13.50 5.56 0.08 -9.79 16 6 C 0.08 1.27 3.21 -68.87 -0.22 1.05 16 7 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 8 N -0.83 -13.85 8.94 -5.66 -0.05 -13.91 16 9 C -0.14 -2.61 4.78 -26.73 -0.13 -2.74 16 10 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 11 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.49 7.13 4.47 36.01 0.16 7.29 16 20 O -0.51 -8.25 16.27 -18.75 -0.30 -8.56 16 21 O -0.50 -6.74 12.96 -39.25 -0.51 -7.25 16 22 C -0.09 -0.96 4.81 -104.62 -0.50 -1.46 16 23 C -0.11 -1.12 9.15 -39.58 -0.36 -1.48 16 24 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.11 -0.87 10.05 -39.59 -0.40 -1.26 16 26 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.10 -0.95 9.03 -39.59 -0.36 -1.31 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 30 H 0.09 1.35 6.31 -51.93 -0.33 1.02 16 31 H 0.41 4.44 6.37 -40.82 -0.26 4.18 16 32 H 0.35 5.91 8.58 -39.29 -0.34 5.57 16 33 H 0.36 5.95 7.55 -39.29 -0.30 5.66 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.41 3.85 9.10 45.56 0.41 4.26 16 40 H 0.13 1.34 6.74 -52.49 -0.35 0.98 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 44 H 0.13 1.00 6.42 -52.49 -0.34 0.67 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -33.55 367.28 -8.00 -41.54 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -5.19 Total: 16.18 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.04 Total: -5.27 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.45 Total: -48.46 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.74 Total: -25.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.55 -8.00 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592994265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.083 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds