Wall clock time and date at job start Tue Mar 31 2020 13:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47520 * 2 1 4 4 C 1.34783 * 119.99830 * 62.00989 * 3 2 1 5 5 O 1.21279 * 119.99940 * 359.73182 * 4 3 2 6 6 C 1.50693 * 120.00138 * 179.72435 * 4 3 2 7 7 H 1.09002 * 109.46830 * 40.00068 * 6 4 3 8 8 N 1.46896 * 109.47149 * 160.00332 * 6 4 3 9 9 C 1.52997 * 109.47588 * 280.00507 * 6 4 3 10 10 C 1.52998 * 109.47378 * 174.99760 * 9 6 4 11 11 C 1.50705 * 109.46964 * 180.02562 * 10 9 6 12 12 H 1.08002 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99756 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00273 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00023 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47530 * 59.99350 * 15 13 11 17 17 H 1.48503 * 109.47450 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47054 * 299.99815 * 15 13 11 19 19 C 1.50707 * 109.46770 * 119.99972 * 2 1 3 20 20 O 1.20825 * 120.00195 * 25.00252 * 19 2 1 21 21 O 1.34227 * 119.99715 * 204.99753 * 19 2 1 22 22 C 1.50700 * 109.47281 * 239.99786 * 2 1 3 23 23 C 1.38237 * 119.99968 * 274.03773 * 22 2 1 24 24 C 1.38245 * 119.99620 * 179.78682 * 23 22 2 25 25 C 1.38227 * 119.99953 * 0.44300 * 24 23 22 26 26 C 1.38238 * 120.00061 * 359.80921 * 25 24 23 27 27 C 1.38232 * 119.99818 * 94.31135 * 22 2 1 28 28 H 1.08999 * 109.46443 * 60.00367 * 1 2 3 29 29 H 1.08998 * 109.46775 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46860 * 300.00097 * 1 2 3 31 31 H 0.96994 * 120.00646 * 241.73824 * 3 2 1 32 32 H 1.00897 * 111.00250 * 60.00361 * 8 6 4 33 33 H 1.00901 * 110.99949 * 183.95774 * 8 6 4 34 34 H 1.09001 * 109.46899 * 294.99974 * 9 6 4 35 35 H 1.09008 * 109.47179 * 54.99348 * 9 6 4 36 36 H 1.08995 * 109.47396 * 299.99583 * 10 9 6 37 37 H 1.08998 * 109.47036 * 60.00108 * 10 9 6 38 38 H 0.96997 * 120.00439 * 180.02562 * 14 13 11 39 39 H 0.96702 * 117.00116 * 180.02562 * 21 19 2 40 40 H 1.07992 * 120.00424 * 359.97438 * 23 22 2 41 41 H 1.08003 * 119.99466 * 180.27639 * 24 23 22 42 42 H 1.07997 * 120.00116 * 179.83885 * 25 24 23 43 43 H 1.08006 * 120.00030 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00168 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 1.7266 2.1991 1.0307 5 8 1.0557 1.7932 1.9559 6 6 2.2342 3.6180 1.0338 7 1 2.1582 4.0332 0.0288 8 7 1.4276 4.4246 1.9592 9 6 3.6965 3.6357 1.4835 10 6 4.2486 5.0578 1.3675 11 6 5.6892 5.0750 1.8099 12 1 6.1633 4.1629 2.1410 13 6 6.4015 6.2554 1.7929 14 7 5.8240 7.3662 1.3901 15 14 8.1873 6.2767 2.3405 16 1 8.9809 5.3662 1.4766 17 1 8.7232 7.6571 2.2281 18 1 8.2776 5.8235 3.7519 19 6 2.0323 -0.7104 1.2305 20 8 1.3396 -1.5363 1.7764 21 8 3.2493 -0.4258 1.7200 22 6 2.0324 -0.7104 -1.2304 23 6 2.1834 -2.0845 -1.2219 24 6 2.6400 -2.7366 -2.3522 25 6 2.9544 -2.0138 -3.4876 26 6 2.8084 -0.6391 -3.4943 27 6 2.3477 0.0125 -2.3656 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.5551 1.7059 -0.7398 32 1 1.4816 4.0598 2.8984 33 1 1.7064 5.3940 1.9313 34 1 3.7620 3.3038 2.5197 35 1 4.2795 2.9668 0.8502 36 1 4.1832 5.3897 0.3314 37 1 3.6657 5.7266 2.0008 38 1 6.3252 8.1966 1.3778 39 1 3.5281 -0.9075 2.5108 40 1 1.9417 -2.6489 -0.3335 41 1 2.7537 -3.8107 -2.3470 42 1 3.3136 -2.5229 -4.3697 43 1 3.0536 -0.0743 -4.3817 44 1 2.2335 1.0865 -2.3709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592994265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:13 Heat of formation + Delta-G solvation = -129.720102 kcal Electronic energy + Delta-G solvation = -27485.661484 eV Core-core repulsion = 23594.546194 eV Total energy + Delta-G solvation = -3891.115290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.42162 -40.61784 -40.04602 -37.41790 -37.23775 -36.55572 -34.83209 -32.99538 -31.85296 -31.66752 -30.48514 -28.17576 -26.66858 -25.60654 -24.10077 -23.35350 -22.45970 -21.39023 -20.97973 -19.40739 -19.22572 -18.39857 -18.24927 -17.71920 -16.79639 -16.57151 -16.40219 -16.01566 -15.99288 -15.74632 -15.58660 -15.28495 -14.80889 -14.67640 -14.54155 -14.34059 -14.00473 -13.98212 -13.55747 -13.41102 -13.27918 -13.14304 -12.92145 -12.67721 -12.65066 -12.52996 -12.39421 -12.06887 -11.79559 -11.74587 -11.65002 -11.29655 -10.77566 -10.53934 -10.48218 -9.92629 -9.82277 -9.65087 -8.19624 -6.29453 0.21608 0.39081 0.95213 1.41019 1.42232 1.45363 1.50453 1.79346 2.02258 2.41348 2.76206 3.14233 3.21684 3.64703 3.70766 3.76254 3.92903 4.02086 4.13122 4.16607 4.24210 4.25732 4.49545 4.51474 4.58310 4.64757 4.68434 4.85623 4.88937 5.01149 5.04849 5.10209 5.12617 5.42184 5.45056 5.47796 5.49173 5.55311 5.68294 5.82960 5.97703 6.04761 6.23622 6.35934 6.47495 6.79076 6.85707 7.07321 7.39472 8.90860 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003409 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.508218 B = 8211.984223 C = 8986.013102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.238 3.762 3 N -0.706 5.706 4 C 0.535 3.465 5 O -0.557 6.557 6 C 0.084 3.916 7 H 0.116 0.884 8 N -0.829 5.829 9 C -0.118 4.118 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.054 0.946 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.488 3.512 20 O -0.535 6.535 21 O -0.507 6.507 22 C -0.103 4.103 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.112 4.112 27 C -0.111 4.111 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.419 0.581 32 H 0.343 0.657 33 H 0.354 0.646 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.005 0.995 37 H 0.002 0.998 38 H 0.264 0.736 39 H 0.423 0.577 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 -18.446 -11.669 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.150 3.850 3 N -0.363 5.363 4 C 0.323 3.677 5 O -0.435 6.435 6 C -0.031 4.031 7 H 0.134 0.866 8 N -0.360 5.360 9 C -0.158 4.158 10 C -0.006 4.006 11 C -0.583 4.583 12 H 0.072 0.928 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.781 3.219 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.198 1.198 19 C 0.330 3.670 20 O -0.424 6.424 21 O -0.320 6.320 22 C -0.104 4.104 23 C -0.143 4.143 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.129 4.129 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.259 0.741 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.284 0.716 40 H 0.130 0.870 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.975 -18.767 -11.672 23.495 hybrid contribution 2.203 0.325 1.495 2.682 sum -5.772 -18.442 -10.177 21.840 Atomic orbital electron populations 1.22095 0.89763 1.04185 1.04216 1.18888 0.95890 0.81492 0.88743 1.46052 1.55765 1.09854 1.24664 1.20840 0.78012 0.87837 0.81060 1.90645 1.39464 1.76883 1.36471 1.21396 0.91631 0.89962 1.00153 0.86613 1.58760 1.58234 1.06742 1.12265 1.22108 0.93860 0.99541 1.00315 1.18964 0.94474 0.91332 0.95869 1.21589 0.98194 0.94471 1.44007 0.92822 1.25817 1.02614 0.95345 0.95327 1.70042 1.38498 0.99748 1.48283 0.85645 0.80026 0.77248 0.78998 1.19222 1.20841 1.19785 1.23771 0.78769 0.79468 0.84989 1.90671 1.57547 1.34469 1.59697 1.84547 1.33971 1.65742 1.47700 1.19296 1.03299 0.94309 0.93477 1.21084 1.00208 0.93299 0.99749 1.21399 0.98194 1.01293 0.92449 1.21638 0.98002 0.94437 0.98793 1.21527 0.97833 0.95138 0.98458 1.21120 0.98709 1.00799 0.92280 0.88709 0.90149 0.91981 0.74090 0.84410 0.83045 0.93925 0.91563 0.97659 0.97923 0.92746 0.71622 0.86981 0.83660 0.82923 0.82821 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 7.94 71.98 0.57 -3.01 16 2 C 0.24 5.91 0.86 2.12 0.00 5.91 16 3 N -0.71 -17.47 4.69 -429.75 -2.01 -19.48 16 4 C 0.54 16.75 6.35 87.65 0.56 17.31 16 5 O -0.56 -20.90 13.50 -3.03 -0.04 -20.94 16 6 C 0.08 2.68 3.21 44.17 0.14 2.83 16 7 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 8 N -0.83 -27.56 8.94 -171.82 -1.54 -29.09 16 9 C -0.12 -4.49 4.78 30.59 0.15 -4.34 16 10 C 0.03 1.47 4.74 29.85 0.14 1.61 16 11 C -0.54 -29.44 9.11 25.60 0.23 -29.20 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 13 C 0.01 0.42 5.46 84.65 0.46 0.88 16 14 N -0.93 -53.50 13.29 21.45 0.28 -53.21 16 15 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.49 14.24 4.47 71.24 0.32 14.56 16 20 O -0.53 -17.70 16.27 21.97 0.36 -17.35 16 21 O -0.51 -13.57 12.96 -51.39 -0.67 -14.24 16 22 C -0.10 -2.09 4.81 -19.87 -0.10 -2.19 16 23 C -0.12 -2.45 9.15 22.27 0.20 -2.24 16 24 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 25 C -0.11 -1.33 10.05 22.27 0.22 -1.10 16 26 C -0.11 -1.42 10.05 22.27 0.22 -1.19 16 27 C -0.11 -1.78 9.03 22.27 0.20 -1.58 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.90 7.87 -2.39 -0.02 1.89 16 30 H 0.06 1.90 6.31 -2.39 -0.02 1.88 16 31 H 0.42 8.37 6.37 -92.71 -0.59 7.78 16 32 H 0.34 11.82 8.58 -89.70 -0.77 11.05 16 33 H 0.35 11.92 7.55 -89.69 -0.68 11.24 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.00 0.13 6.87 -2.39 -0.02 0.11 16 38 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.42 7.98 9.10 -74.06 -0.67 7.31 16 40 H 0.11 2.43 6.74 -2.91 -0.02 2.41 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 43 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.14 1.82 6.42 -2.91 -0.02 1.80 16 Total: -1.00 -71.78 367.28 0.33 -71.45 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -1.64 Total: 41.21 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 3.55 Total: -3.23 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -3.26 Total: -101.78 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -0.35 Total: -52.52 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.78 0.33 -71.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592994265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.269 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds