Wall clock time and date at job start Tue Mar 31 2020 12:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34224 * 125.80553 * 2 1 4 4 H 0.97000 * 125.38429 * 359.97438 * 3 2 1 5 5 C 1.37797 * 109.23488 * 179.97438 * 3 2 1 6 6 C 1.46814 * 125.84277 * 179.97438 * 5 3 2 7 7 O 1.21677 * 120.00040 * 288.32844 * 6 5 3 8 8 N 1.34778 * 119.99785 * 108.32202 * 6 5 3 9 9 C 1.46922 * 120.63282 * 354.35286 * 8 6 5 10 10 C 1.53183 * 108.77852 * 233.61098 * 9 8 6 11 11 C 1.53043 * 109.31538 * 305.36628 * 10 9 8 12 12 C 1.53035 * 109.53777 * 61.36381 * 11 10 9 13 13 H 1.08996 * 109.49624 * 58.62061 * 12 11 10 14 14 C 1.50694 * 109.50000 * 178.68568 * 12 11 10 15 15 H 1.08001 * 119.99623 * 359.94112 * 14 12 11 16 16 C 1.37874 * 120.00334 * 179.65839 * 14 12 11 17 17 N 1.31518 * 119.99845 * 0.27677 * 16 14 12 18 18 Si 1.86807 * 120.00204 * 180.27663 * 16 14 12 19 19 H 1.48500 * 109.47080 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46930 * 120.00288 * 18 16 14 21 21 H 1.48502 * 109.46796 * 240.00330 * 18 16 14 22 22 C 1.46932 * 120.60186 * 174.38071 * 8 6 5 23 23 C 1.36333 * 108.31881 * 0.26072 * 5 3 2 24 24 C 1.50695 * 126.49604 * 179.73624 * 23 5 3 25 25 C 1.38288 * 125.80647 * 179.97438 * 2 1 3 26 26 C 1.47248 * 126.47031 * 0.05108 * 25 2 1 27 27 O 1.21537 * 119.99295 * 89.98075 * 26 25 2 28 28 O 1.34757 * 120.00507 * 269.97557 * 26 25 2 29 29 H 1.09002 * 109.47276 * 90.02296 * 1 2 3 30 30 H 1.08990 * 109.47512 * 210.02847 * 1 2 3 31 31 H 1.09000 * 109.47185 * 330.03061 * 1 2 3 32 32 H 1.09002 * 109.58633 * 113.82165 * 9 8 6 33 33 H 1.09001 * 109.58409 * 353.40207 * 9 8 6 34 34 H 1.08999 * 109.49819 * 185.41455 * 10 9 8 35 35 H 1.09001 * 109.50211 * 65.31697 * 10 9 8 36 36 H 1.09001 * 109.45496 * 301.34317 * 11 10 9 37 37 H 1.08994 * 109.44864 * 181.38177 * 11 10 9 38 38 H 0.96998 * 119.99627 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.62171 * 6.62022 * 22 8 6 40 40 H 1.09002 * 109.56121 * 246.19258 * 22 8 6 41 41 H 1.08994 * 109.47040 * 90.00344 * 24 23 5 42 42 H 1.09004 * 109.47011 * 209.99671 * 24 23 5 43 43 H 1.09002 * 109.47730 * 329.99960 * 24 23 5 44 44 H 0.96698 * 117.00297 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2922 1.0886 0.0000 4 1 1.9795 2.0068 -0.0004 5 6 3.6130 0.6956 0.0006 6 6 4.7764 1.5911 0.0002 7 8 5.0566 2.2241 -1.0004 8 7 5.5339 1.7121 1.1084 9 6 5.1397 1.0521 2.3604 10 6 5.1012 2.0984 3.4785 11 6 6.4502 2.8181 3.5451 12 6 6.7128 3.5368 2.2198 13 1 5.9093 4.2474 2.0259 14 6 8.0261 4.2717 2.2977 15 1 8.6147 4.2312 3.2023 16 6 8.4792 4.9908 1.2121 17 7 7.7626 5.0399 0.1104 18 14 10.1110 5.8953 1.3060 19 1 10.7185 5.6827 2.6443 20 1 11.0264 5.3748 0.2589 21 1 9.8853 7.3470 1.0893 22 6 6.7693 2.5073 1.0868 23 6 3.6546 -0.6671 -0.0049 24 6 4.8928 -1.5260 -0.0120 25 6 2.3160 -1.1215 0.0005 26 6 1.8678 -2.5241 0.0001 27 8 1.6833 -3.1026 -1.0527 28 8 1.6623 -3.1662 1.1668 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8896 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 5.8653 0.2777 2.6095 33 1 4.1521 0.6060 2.2431 34 1 4.9041 1.6062 4.4309 35 1 4.3126 2.8222 3.2726 36 1 7.2413 2.0905 3.7266 37 1 6.4335 3.5462 4.3560 38 1 8.0812 5.5462 -0.6532 39 1 6.8568 3.0216 0.1298 40 1 7.6279 1.8516 1.2314 41 1 5.1943 -1.7372 1.0139 42 1 4.6825 -2.4624 -0.5289 43 1 5.6972 -0.9999 -0.5261 44 1 1.3680 -4.0859 1.1159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599950698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:32 Heat of formation + Delta-G solvation = -95.708442 kcal Electronic energy + Delta-G solvation = -27761.776536 eV Core-core repulsion = 23872.136102 eV Total energy + Delta-G solvation = -3889.640434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.79720 -39.86525 -39.00023 -36.67907 -36.09219 -33.63763 -33.05029 -31.92885 -31.65257 -29.85068 -28.33958 -26.83925 -25.09167 -24.68420 -23.68583 -21.87650 -20.92610 -20.09220 -19.44402 -18.64260 -18.01972 -17.33788 -16.46667 -16.15067 -16.02214 -15.57155 -14.91213 -14.72041 -14.50724 -14.32236 -13.73303 -13.57350 -13.36780 -13.25858 -13.19234 -13.01828 -12.76215 -12.63891 -12.43604 -12.33293 -12.11160 -11.90036 -11.72239 -11.51065 -11.04222 -10.95372 -10.84858 -10.52977 -10.42506 -10.28584 -9.94458 -9.56505 -9.18142 -8.99316 -8.95994 -8.48373 -8.09031 -7.84159 -6.04087 -4.12976 1.73993 2.02318 2.19369 2.57467 3.14966 3.27745 3.36437 3.38884 3.39431 3.80610 4.39782 4.49712 4.76475 4.88227 5.03435 5.20292 5.23192 5.26041 5.34179 5.42667 5.46995 5.55009 5.64754 5.72113 5.74364 5.97186 5.98608 6.06342 6.14494 6.26969 6.32546 6.53145 6.56548 6.62001 6.71828 6.80230 6.91845 7.06130 7.18005 7.23175 7.57980 7.80196 7.80707 7.93217 8.13369 8.33029 8.68600 8.91485 9.53188 11.01162 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.003287 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.274242 B = 8515.594688 C = 8706.870657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.088 3.912 3 N -0.510 5.510 4 H 0.425 0.575 5 C -0.013 4.013 6 C 0.573 3.427 7 O -0.523 6.523 8 N -0.588 5.588 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.111 4.111 12 C 0.041 3.959 13 H 0.028 0.972 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.111 3.889 23 C -0.076 4.076 24 C -0.090 4.090 25 C -0.208 4.208 26 C 0.569 3.431 27 O -0.510 6.510 28 O -0.510 6.510 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.263 0.737 39 H 0.124 0.876 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 -13.296 4.361 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.033 4.033 3 N -0.104 5.104 4 H 0.264 0.736 5 C -0.127 4.127 6 C 0.357 3.643 7 O -0.399 6.399 8 N -0.320 5.320 9 C -0.014 4.014 10 C -0.171 4.171 11 C -0.149 4.149 12 C 0.022 3.978 13 H 0.046 0.954 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.009 4.009 23 C -0.083 4.083 24 C -0.148 4.148 25 C -0.216 4.216 26 C 0.412 3.588 27 O -0.397 6.397 28 O -0.321 6.321 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -13.782 -12.438 3.371 18.868 hybrid contribution 0.494 0.293 -0.031 0.575 sum -13.288 -12.145 3.340 18.310 Atomic orbital electron populations 1.20480 0.86894 1.04008 1.03625 1.20362 0.93280 0.85020 1.04609 1.41402 1.04989 1.08771 1.55279 0.73595 1.19935 0.84184 0.93733 1.14844 1.17124 0.81955 0.81105 0.84135 1.90883 1.71268 1.44844 1.32928 1.48459 1.25623 1.49394 1.08493 1.21675 1.00133 0.95050 0.84569 1.21940 0.99987 0.98124 0.97017 1.21636 0.94155 0.98665 1.00414 1.18964 0.97560 0.92539 0.88776 0.95359 1.21110 1.04951 1.30277 0.99571 0.92236 1.25059 0.97275 0.96207 0.95484 1.69890 1.37488 1.40977 1.03442 0.86534 0.83860 0.79543 0.78069 1.19762 1.20932 1.21022 1.22407 0.80453 0.91805 1.06192 1.19312 0.93317 0.91125 1.04509 1.20299 0.93774 0.98187 1.02501 1.18014 0.93525 0.88681 1.21396 1.20046 0.71967 0.86164 0.80670 1.90904 1.47636 1.68049 1.33150 1.84732 1.80017 1.31700 1.35622 0.89955 0.89874 0.90530 0.91780 0.90828 0.92076 0.92394 0.93032 0.92964 0.92664 0.85799 0.93526 0.90796 0.91656 0.91004 0.73490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.24 36.01 0.37 -0.34 16 2 C 0.09 1.02 7.21 -81.53 -0.59 0.44 16 3 N -0.51 -6.53 6.01 -5.60 -0.03 -6.56 16 4 H 0.43 4.55 8.96 -40.82 -0.37 4.18 16 5 C -0.01 -0.22 5.02 -82.40 -0.41 -0.63 16 6 C 0.57 11.39 7.10 -12.79 -0.09 11.30 16 7 O -0.52 -12.78 16.53 5.21 0.09 -12.69 16 8 N -0.59 -11.37 2.97 -174.26 -0.52 -11.89 16 9 C 0.11 1.69 6.25 -3.72 -0.02 1.66 16 10 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 12 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 13 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 14 C -0.52 -13.73 8.57 -34.44 -0.30 -14.03 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 17 N -0.88 -25.17 11.39 55.43 0.63 -24.53 16 18 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.11 2.59 5.41 -3.70 -0.02 2.57 16 23 C -0.08 -1.13 5.72 -104.12 -0.60 -1.73 16 24 C -0.09 -1.21 10.01 36.00 0.36 -0.85 16 25 C -0.21 -2.80 6.01 -105.03 -0.63 -3.44 16 26 C 0.57 7.10 7.51 34.39 0.26 7.36 16 27 O -0.51 -7.67 17.90 -19.30 -0.35 -8.02 16 28 O -0.51 -4.64 13.44 -40.65 -0.55 -5.19 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.03 6.09 -51.93 -0.32 0.71 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 39 H 0.12 3.41 5.10 -51.93 -0.27 3.14 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 43 H 0.07 1.04 7.91 -51.93 -0.41 0.63 16 44 H 0.41 1.70 9.11 45.56 0.42 2.12 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -34.15 367.50 -8.02 -42.17 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.54 Total: 5.10 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.27 Total: 0.21 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.08 Total: -42.99 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.81 Total: -25.89 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.15 -8.02 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599950698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.540 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds