Wall clock time and date at job start Tue Mar 31 2020 12:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34224 * 125.80553 * 2 1 4 4 H 0.97000 * 125.38429 * 359.97438 * 3 2 1 5 5 C 1.37797 * 109.23488 * 179.97438 * 3 2 1 6 6 C 1.46814 * 125.84277 * 179.97438 * 5 3 2 7 7 O 1.21677 * 120.00040 * 288.32844 * 6 5 3 8 8 N 1.34778 * 119.99785 * 108.32202 * 6 5 3 9 9 C 1.46922 * 120.63282 * 354.35286 * 8 6 5 10 10 C 1.53183 * 108.77852 * 233.61098 * 9 8 6 11 11 C 1.53043 * 109.31538 * 305.36628 * 10 9 8 12 12 C 1.53035 * 109.53777 * 61.36381 * 11 10 9 13 13 H 1.08996 * 109.49624 * 58.62061 * 12 11 10 14 14 C 1.50694 * 109.50000 * 178.68568 * 12 11 10 15 15 H 1.08001 * 119.99623 * 359.94112 * 14 12 11 16 16 C 1.37874 * 120.00334 * 179.65839 * 14 12 11 17 17 N 1.31518 * 119.99845 * 0.27677 * 16 14 12 18 18 Si 1.86807 * 120.00204 * 180.27663 * 16 14 12 19 19 H 1.48500 * 109.47080 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46930 * 120.00288 * 18 16 14 21 21 H 1.48502 * 109.46796 * 240.00330 * 18 16 14 22 22 C 1.46932 * 120.60186 * 174.38071 * 8 6 5 23 23 C 1.36333 * 108.31881 * 0.26072 * 5 3 2 24 24 C 1.50695 * 126.49604 * 179.73624 * 23 5 3 25 25 C 1.38288 * 125.80647 * 179.97438 * 2 1 3 26 26 C 1.47248 * 126.47031 * 0.05108 * 25 2 1 27 27 O 1.21537 * 119.99295 * 89.98075 * 26 25 2 28 28 O 1.34757 * 120.00507 * 269.97557 * 26 25 2 29 29 H 1.09002 * 109.47276 * 90.02296 * 1 2 3 30 30 H 1.08990 * 109.47512 * 210.02847 * 1 2 3 31 31 H 1.09000 * 109.47185 * 330.03061 * 1 2 3 32 32 H 1.09002 * 109.58633 * 113.82165 * 9 8 6 33 33 H 1.09001 * 109.58409 * 353.40207 * 9 8 6 34 34 H 1.08999 * 109.49819 * 185.41455 * 10 9 8 35 35 H 1.09001 * 109.50211 * 65.31697 * 10 9 8 36 36 H 1.09001 * 109.45496 * 301.34317 * 11 10 9 37 37 H 1.08994 * 109.44864 * 181.38177 * 11 10 9 38 38 H 0.96998 * 119.99627 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.62171 * 6.62022 * 22 8 6 40 40 H 1.09002 * 109.56121 * 246.19258 * 22 8 6 41 41 H 1.08994 * 109.47040 * 90.00344 * 24 23 5 42 42 H 1.09004 * 109.47011 * 209.99671 * 24 23 5 43 43 H 1.09002 * 109.47730 * 329.99960 * 24 23 5 44 44 H 0.96698 * 117.00297 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2922 1.0886 0.0000 4 1 1.9795 2.0068 -0.0004 5 6 3.6130 0.6956 0.0006 6 6 4.7764 1.5911 0.0002 7 8 5.0566 2.2241 -1.0004 8 7 5.5339 1.7121 1.1084 9 6 5.1397 1.0521 2.3604 10 6 5.1012 2.0984 3.4785 11 6 6.4502 2.8181 3.5451 12 6 6.7128 3.5368 2.2198 13 1 5.9093 4.2474 2.0259 14 6 8.0261 4.2717 2.2977 15 1 8.6147 4.2312 3.2023 16 6 8.4792 4.9908 1.2121 17 7 7.7626 5.0399 0.1104 18 14 10.1110 5.8953 1.3060 19 1 10.7185 5.6827 2.6443 20 1 11.0264 5.3748 0.2589 21 1 9.8853 7.3470 1.0893 22 6 6.7693 2.5073 1.0868 23 6 3.6546 -0.6671 -0.0049 24 6 4.8928 -1.5260 -0.0120 25 6 2.3160 -1.1215 0.0005 26 6 1.8678 -2.5241 0.0001 27 8 1.6833 -3.1026 -1.0527 28 8 1.6623 -3.1662 1.1668 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8896 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 5.8653 0.2777 2.6095 33 1 4.1521 0.6060 2.2431 34 1 4.9041 1.6062 4.4309 35 1 4.3126 2.8222 3.2726 36 1 7.2413 2.0905 3.7266 37 1 6.4335 3.5462 4.3560 38 1 8.0812 5.5462 -0.6532 39 1 6.8568 3.0216 0.1298 40 1 7.6279 1.8516 1.2314 41 1 5.1943 -1.7372 1.0139 42 1 4.6825 -2.4624 -0.5289 43 1 5.6972 -0.9999 -0.5261 44 1 1.3680 -4.0859 1.1159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599950698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:31 Heat of formation + Delta-G solvation = -119.282161 kcal Electronic energy + Delta-G solvation = -27762.798769 eV Core-core repulsion = 23872.136102 eV Total energy + Delta-G solvation = -3890.662667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.87449 -40.94299 -40.37745 -38.32626 -36.94661 -35.37064 -34.29001 -33.44435 -32.68744 -31.55743 -29.25719 -28.15668 -26.92525 -25.96010 -24.83277 -23.47612 -22.24455 -21.08059 -20.79786 -19.95485 -18.93919 -18.78318 -18.18769 -17.62613 -17.05377 -16.82470 -16.54461 -15.97243 -15.77779 -15.68423 -15.21205 -14.90835 -14.62285 -14.39184 -14.28131 -14.19962 -14.13557 -13.83110 -13.75786 -13.50269 -13.26963 -13.18944 -12.91470 -12.69264 -12.63960 -12.44756 -12.29665 -12.22425 -11.86071 -11.82237 -11.64231 -11.26221 -10.97828 -10.82392 -10.53598 -9.99950 -9.50267 -9.16290 -8.11493 -6.28195 0.68579 1.07553 1.12328 1.33603 1.40807 1.42330 1.53673 1.99215 2.19564 2.41717 2.57846 3.17380 3.54761 3.68441 3.98544 4.01762 4.05610 4.15873 4.32680 4.41129 4.53967 4.58647 4.66985 4.68740 4.71991 4.74342 4.80000 4.84236 4.92039 5.02880 5.06980 5.09331 5.23291 5.25534 5.34543 5.50056 5.53213 5.57921 5.61426 5.66202 5.88514 5.97996 6.27056 6.31999 6.52596 6.84611 7.05619 7.13315 7.42363 8.91967 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.003287 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.274242 B = 8515.594688 C = 8706.870657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.116 3.884 3 N -0.506 5.506 4 H 0.433 0.567 5 C -0.046 4.046 6 C 0.574 3.426 7 O -0.584 6.584 8 N -0.587 5.587 9 C 0.107 3.893 10 C -0.124 4.124 11 C -0.105 4.105 12 C 0.040 3.960 13 H -0.012 1.012 14 C -0.533 4.533 15 H 0.063 0.937 16 C 0.011 3.989 17 N -0.915 5.915 18 Si 0.956 3.044 19 H -0.260 1.260 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.124 3.876 23 C -0.071 4.071 24 C -0.091 4.091 25 C -0.235 4.235 26 C 0.582 3.418 27 O -0.542 6.542 28 O -0.499 6.499 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.259 0.741 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.673 -15.227 6.693 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 N -0.101 5.101 4 H 0.273 0.727 5 C -0.158 4.158 6 C 0.361 3.639 7 O -0.464 6.464 8 N -0.317 5.317 9 C -0.014 4.014 10 C -0.162 4.162 11 C -0.143 4.143 12 C 0.020 3.980 13 H 0.006 0.994 14 C -0.572 4.572 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.554 5.554 18 Si 0.782 3.218 19 H -0.184 1.184 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.002 3.998 23 C -0.078 4.078 24 C -0.148 4.148 25 C -0.243 4.243 26 C 0.425 3.575 27 O -0.432 6.432 28 O -0.312 6.312 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -15.426 -14.404 5.782 21.883 hybrid contribution 0.920 0.839 -0.712 1.434 sum -14.506 -13.566 5.070 20.498 Atomic orbital electron populations 1.20701 0.83630 1.05946 1.04821 1.21047 0.94938 0.83886 1.00782 1.41414 1.03976 1.09698 1.55038 0.72666 1.19247 0.84144 0.93302 1.19110 1.17612 0.82645 0.80546 0.83111 1.90840 1.72964 1.47574 1.35052 1.48422 1.24318 1.48823 1.10162 1.21963 1.01879 0.95175 0.82398 1.21902 0.97332 0.97873 0.99087 1.21522 0.96723 0.98765 0.97250 1.18898 0.95138 0.92213 0.91717 0.99419 1.21542 1.05924 1.30226 0.99469 0.91850 1.25874 1.00592 0.97237 0.95167 1.70088 1.39282 1.41940 1.04090 0.85530 0.79804 0.78044 0.78439 1.18360 1.20958 1.20991 1.21835 0.82343 0.91891 1.03703 1.19512 0.94497 0.90645 1.03103 1.20338 0.92780 0.98036 1.03614 1.18218 0.93133 0.90014 1.22891 1.19756 0.71221 0.85674 0.80831 1.90901 1.49260 1.68611 1.34422 1.84668 1.79362 1.33463 1.33668 0.88969 0.88491 0.88049 0.89807 0.88572 0.87752 0.93169 0.92171 0.92788 0.93179 0.90358 0.93810 0.88742 0.90808 0.93074 0.70792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.24 71.24 0.73 -0.35 16 2 C 0.12 2.39 7.21 42.20 0.30 2.69 16 3 N -0.51 -12.32 6.01 -171.64 -1.03 -13.35 16 4 H 0.43 8.87 8.96 -92.71 -0.83 8.04 16 5 C -0.05 -1.45 5.02 40.01 0.20 -1.25 16 6 C 0.57 23.75 7.10 86.49 0.61 24.37 16 7 O -0.58 -30.58 16.53 -4.27 -0.07 -30.65 16 8 N -0.59 -23.19 2.97 -823.46 -2.45 -25.63 16 9 C 0.11 3.10 6.25 86.36 0.54 3.64 16 10 C -0.12 -3.56 6.08 30.67 0.19 -3.37 16 11 C -0.10 -3.90 5.11 30.62 0.16 -3.74 16 12 C 0.04 1.95 2.25 -11.46 -0.03 1.92 16 13 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 14 C -0.53 -28.78 8.57 25.60 0.22 -28.56 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.01 0.59 5.30 84.65 0.45 1.04 16 17 N -0.92 -55.11 11.39 21.45 0.24 -54.87 16 18 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 C 0.12 6.07 5.41 86.36 0.47 6.53 16 23 C -0.07 -2.01 5.72 -19.54 -0.11 -2.12 16 24 C -0.09 -2.33 10.01 71.23 0.71 -1.62 16 25 C -0.24 -5.80 6.01 -20.13 -0.12 -5.92 16 26 C 0.58 12.95 7.51 70.19 0.53 13.48 16 27 O -0.54 -15.26 17.90 19.72 0.35 -14.91 16 28 O -0.50 -7.24 13.44 -56.68 -0.76 -8.00 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 0.92 7.93 -2.39 -0.02 0.90 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.10 2.41 6.09 -2.39 -0.01 2.39 16 34 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.08 4.62 5.10 -2.39 -0.01 4.61 16 40 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 43 H 0.05 1.52 7.91 -2.39 -0.02 1.50 16 44 H 0.43 1.97 9.11 -74.06 -0.67 1.29 16 Total: -1.00 -79.58 367.50 2.70 -76.88 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.46 Total: 17.95 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.85 Total: 6.74 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -3.24 Total: -93.85 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.48 Total: -53.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -79.58 2.70 -76.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599950698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.400 kcal (2) G-P(sol) polarization free energy of solvation -79.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds