Wall clock time and date at job start Tue Mar 31 2020 13:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47281 * 2 1 4 4 C 1.37654 * 119.96311 * 265.23440 * 3 2 1 5 5 C 1.39799 * 119.92170 * 180.29494 * 4 3 2 6 6 C 1.47442 * 120.08228 * 179.74459 * 5 4 3 7 7 O 1.21511 * 119.99578 * 359.97438 * 6 5 4 8 8 O 1.34747 * 120.00408 * 179.97438 * 6 5 4 9 9 C 1.39837 * 119.83773 * 359.72219 * 5 4 3 10 10 C 1.37619 * 119.92400 * 0.02562 * 9 5 4 11 11 C 1.39139 * 119.95670 * 84.99705 * 3 2 1 12 12 N 1.39397 * 119.92421 * 0.02562 * 11 3 2 13 13 C 1.34772 * 120.00246 * 154.83930 * 12 11 3 14 14 O 1.21575 * 120.00030 * 354.38635 * 13 12 11 15 15 N 1.34779 * 119.99986 * 174.39099 * 13 12 11 16 16 C 1.46497 * 119.99765 * 359.97438 * 15 13 12 17 17 C 1.46494 * 119.99864 * 179.97438 * 15 13 12 18 18 H 1.09000 * 109.47725 * 0.02562 * 17 15 13 19 19 C 1.53005 * 109.47300 * 119.99963 * 17 15 13 20 20 C 1.50704 * 109.47311 * 239.99776 * 17 15 13 21 21 H 1.07997 * 119.99686 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99871 * 179.97438 * 20 17 15 23 23 N 1.31516 * 120.00526 * 0.02562 * 22 20 17 24 24 Si 1.86807 * 119.99606 * 180.02562 * 22 20 17 25 25 H 1.48505 * 109.47030 * 270.00273 * 24 22 20 26 26 H 1.48494 * 109.47170 * 30.00347 * 24 22 20 27 27 H 1.48500 * 109.46877 * 150.00443 * 24 22 20 28 28 H 1.08998 * 109.47304 * 299.99912 * 1 2 3 29 29 H 1.09001 * 109.46674 * 60.00261 * 1 2 3 30 30 H 1.08999 * 109.47169 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47304 * 240.00088 * 2 1 3 32 32 H 1.09005 * 109.47218 * 120.00241 * 2 1 3 33 33 H 1.08001 * 120.03879 * 0.02562 * 4 3 2 34 34 H 0.96695 * 117.00597 * 180.02562 * 8 6 5 35 35 H 1.08004 * 120.03655 * 179.97438 * 9 5 4 36 36 H 1.07999 * 119.96206 * 179.97438 * 10 9 5 37 37 H 0.97001 * 119.99490 * 334.83688 * 12 11 3 38 38 H 1.09002 * 109.47543 * 269.99638 * 16 15 13 39 39 H 1.08995 * 109.47690 * 30.00116 * 16 15 13 40 40 H 1.09004 * 109.46972 * 150.00221 * 16 15 13 41 41 H 1.08999 * 109.47280 * 300.00388 * 19 17 15 42 42 H 1.09008 * 109.46868 * 59.99499 * 19 17 15 43 43 H 1.08992 * 109.47348 * 179.97438 * 19 17 15 44 44 H 0.97001 * 119.99805 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3550 2.0359 -1.1884 5 6 2.8268 3.3519 -1.1869 6 6 3.1787 4.0123 -2.4573 7 8 3.0592 3.4125 -3.5073 8 8 3.6328 5.2809 -2.4541 9 6 2.9637 4.0405 0.0224 10 6 2.6343 3.4210 1.2063 11 6 2.1649 2.1109 1.2009 12 7 1.8330 1.4863 2.4021 13 6 2.3996 1.8967 3.5541 14 8 3.2742 2.7409 3.5344 15 7 1.9966 1.3711 4.7279 16 6 0.9424 0.3542 4.7517 17 6 2.6128 1.8168 5.9800 18 1 3.3697 2.5709 5.7643 19 6 1.5401 2.4177 6.8908 20 6 3.2563 0.6414 6.6695 21 1 3.2111 -0.3394 6.2198 22 6 3.9035 0.8185 7.8740 23 7 3.9590 2.0130 8.4214 24 14 4.7018 -0.6384 8.7283 25 1 3.7169 -1.2809 9.6352 26 1 5.1534 -1.6219 7.7115 27 1 5.8696 -0.1705 9.5173 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.2478 1.5011 -2.1206 34 1 3.8502 5.6717 -3.3114 35 1 3.3283 5.0572 0.0273 36 1 2.7402 3.9521 2.1407 37 1 1.1943 0.7562 2.4088 38 1 -0.0291 0.8398 4.8443 39 1 0.9733 -0.2230 3.8276 40 1 1.0983 -0.3111 5.6010 41 1 1.0746 3.2678 6.3921 42 1 0.7829 1.6639 7.1066 43 1 1.9985 2.7489 7.8225 44 1 4.4141 2.1374 9.2690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605791639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:16 Heat of formation + Delta-G solvation = -110.278341 kcal Electronic energy + Delta-G solvation = -27047.018836 eV Core-core repulsion = 23156.746605 eV Total energy + Delta-G solvation = -3890.272232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10218 -41.18980 -39.80025 -37.36142 -37.04975 -36.18371 -34.94444 -34.63346 -31.78760 -30.78413 -30.15842 -27.72007 -27.29200 -25.72745 -24.91686 -23.54566 -22.73137 -21.57459 -20.80248 -19.56001 -18.80025 -18.63341 -18.17086 -17.97166 -17.02026 -16.79839 -16.59878 -16.24557 -15.86245 -15.53035 -15.06569 -14.86739 -14.68834 -14.54445 -14.40806 -14.26736 -13.90273 -13.67588 -13.50902 -13.11060 -12.96130 -12.90588 -12.75460 -12.71278 -12.60920 -12.57122 -12.20950 -12.13931 -12.06969 -11.86521 -11.74720 -11.56511 -11.18274 -10.95427 -10.50987 -9.87966 -9.53292 -9.03504 -8.14028 -6.30197 -0.37497 0.33041 1.41433 1.42538 1.44379 1.53050 1.62985 2.10066 2.13345 2.42248 2.77336 2.96598 3.14729 3.66789 3.78419 4.07712 4.13273 4.17268 4.22777 4.36379 4.47920 4.54936 4.65518 4.70504 4.75594 4.88953 4.93731 4.97374 5.06033 5.07755 5.09622 5.15888 5.23149 5.31597 5.39194 5.44554 5.47036 5.52843 5.59546 5.65574 5.88437 5.94305 6.14150 6.19862 6.76897 6.97200 7.00006 7.35442 7.52869 8.90272 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.003027 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.986104 B = 9246.786412 C = 9911.196896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.130 4.130 4 C -0.025 4.025 5 C -0.172 4.172 6 C 0.540 3.460 7 O -0.548 6.548 8 O -0.507 6.507 9 C -0.036 4.036 10 C -0.169 4.169 11 C 0.210 3.790 12 N -0.667 5.667 13 C 0.690 3.310 14 O -0.615 6.615 15 N -0.607 5.607 16 C 0.076 3.924 17 C 0.278 3.722 18 H 0.013 0.987 19 C -0.132 4.132 20 C -0.539 4.539 21 H 0.063 0.937 22 C 0.017 3.983 23 N -0.916 5.916 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.271 1.271 27 H -0.288 1.288 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.433 0.567 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.420 0.580 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.020 0.980 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 -2.221 -18.217 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.133 4.133 4 C -0.043 4.043 5 C -0.175 4.175 6 C 0.387 3.613 7 O -0.441 6.441 8 O -0.320 6.320 9 C -0.055 4.055 10 C -0.190 4.190 11 C 0.111 3.889 12 N -0.316 5.316 13 C 0.392 3.608 14 O -0.496 6.496 15 N -0.340 5.340 16 C -0.066 4.066 17 C 0.176 3.824 18 H 0.031 0.969 19 C -0.191 4.191 20 C -0.578 4.578 21 H 0.081 0.919 22 C -0.183 4.183 23 N -0.555 5.555 24 Si 0.789 3.211 25 H -0.192 1.192 26 H -0.196 1.196 27 H -0.214 1.214 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.295 0.705 35 H 0.167 0.833 36 H 0.148 0.852 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.039 0.961 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.280 -1.897 -17.800 19.723 hybrid contribution 0.645 -0.275 0.378 0.797 sum -7.635 -2.171 -17.423 19.146 Atomic orbital electron populations 1.21807 0.93251 1.03212 1.02278 1.20575 0.97238 0.90052 1.04272 1.19681 1.05463 0.97981 0.90204 1.21022 0.92954 0.92190 0.98166 1.19055 1.11371 0.96296 0.90757 1.20689 0.72347 0.79673 0.88582 1.90860 1.52768 1.66107 1.34385 1.84549 1.76922 1.27750 1.42814 1.21365 0.93891 1.00221 0.90005 1.21424 1.03624 0.94254 0.99702 1.17935 0.94850 0.91211 0.84903 1.42719 1.46594 1.38411 1.03849 1.16167 0.81586 0.81886 0.81192 1.90827 1.35291 1.37414 1.86048 1.47520 1.39671 1.41814 1.05027 1.21861 0.89821 0.91255 1.03709 1.18499 0.91036 0.94316 0.78521 0.96853 1.21891 0.98002 0.98016 1.01205 1.21584 1.35525 0.95080 1.05588 0.91928 1.25693 0.96360 0.98450 0.97780 1.70016 1.43530 1.23061 1.18902 0.85473 0.78053 0.79186 0.78389 1.19245 1.19612 1.21375 0.93120 0.92007 0.90133 0.88625 0.91037 0.82903 0.70541 0.83298 0.85161 0.73823 0.91248 0.90006 0.90282 0.96096 0.93331 0.91267 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.80 71.98 0.71 -1.18 16 2 C -0.08 -1.35 5.43 29.85 0.16 -1.19 16 3 C -0.13 -2.94 5.14 -19.79 -0.10 -3.04 16 4 C -0.02 -0.55 9.21 22.51 0.21 -0.35 16 5 C -0.17 -4.22 5.88 -20.09 -0.12 -4.34 16 6 C 0.54 12.37 8.26 70.25 0.58 12.95 16 7 O -0.55 -14.80 17.12 19.80 0.34 -14.46 16 8 O -0.51 -8.48 12.67 -56.57 -0.72 -9.20 16 9 C -0.04 -0.95 9.60 22.51 0.22 -0.73 16 10 C -0.17 -5.38 8.68 22.35 0.19 -5.18 16 11 C 0.21 6.05 6.41 38.38 0.25 6.29 16 12 N -0.67 -19.71 4.84 -317.18 -1.54 -21.25 16 13 C 0.69 27.84 8.08 179.06 1.45 29.28 16 14 O -0.62 -30.28 12.81 -3.95 -0.05 -30.33 16 15 N -0.61 -24.44 2.75 -844.86 -2.33 -26.76 16 16 C 0.08 2.16 9.25 127.77 1.18 3.35 16 17 C 0.28 13.98 2.64 44.25 0.12 14.10 16 18 H 0.01 0.81 6.90 -2.39 -0.02 0.80 16 19 C -0.13 -6.16 8.97 71.98 0.65 -5.52 16 20 C -0.54 -28.32 7.99 25.60 0.20 -28.12 16 21 H 0.06 3.17 7.33 -2.91 -0.02 3.15 16 22 C 0.02 0.91 5.30 84.65 0.45 1.36 16 23 N -0.92 -51.70 11.32 21.45 0.24 -51.46 16 24 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 28 H 0.05 0.68 7.43 -2.39 -0.02 0.66 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 1.25 8.05 -2.39 -0.02 1.23 16 32 H 0.07 1.19 7.25 -2.38 -0.02 1.17 16 33 H 0.15 2.95 7.64 -2.91 -0.02 2.93 16 34 H 0.43 2.95 9.11 -74.06 -0.67 2.28 16 35 H 0.15 3.46 7.60 -2.91 -0.02 3.43 16 36 H 0.13 4.97 5.77 -2.91 -0.02 4.95 16 37 H 0.42 9.39 4.41 -92.71 -0.41 8.98 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.70 6.29 -2.39 -0.02 1.68 16 40 H 0.08 2.44 7.02 -2.38 -0.02 2.42 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 2.03 7.67 -2.38 -0.02 2.01 16 43 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 44 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -72.24 362.43 4.09 -68.15 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.03 Total: 23.55 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 6.14 Total: 17.68 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -3.62 Total: -99.47 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.43 Total: -53.99 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.24 4.09 -68.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605791639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.124 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds