Wall clock time and date at job start Tue Mar 31 2020 13:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47264 * 2 1 4 4 C 1.37660 * 119.96276 * 265.02259 * 3 2 1 5 5 C 1.39794 * 119.92306 * 179.97438 * 4 3 2 6 6 C 1.47446 * 120.07891 * 179.97438 * 5 4 3 7 7 O 1.21503 * 120.00145 * 359.97438 * 6 5 4 8 8 O 1.34754 * 119.99670 * 179.97438 * 6 5 4 9 9 C 1.39830 * 119.84202 * 0.02562 * 5 4 3 10 10 C 1.37616 * 119.91998 * 359.73898 * 9 5 4 11 11 C 1.39134 * 119.96128 * 85.00392 * 3 2 1 12 12 N 1.39400 * 119.91894 * 359.97438 * 11 3 2 13 13 C 1.34775 * 119.99710 * 145.50948 * 12 11 3 14 14 O 1.21581 * 120.00384 * 4.53080 * 13 12 11 15 15 N 1.34781 * 119.99935 * 184.53100 * 13 12 11 16 16 C 1.46488 * 120.00037 * 359.97438 * 15 13 12 17 17 C 1.46502 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.09002 * 109.47173 * 359.97438 * 17 15 13 19 19 C 1.53004 * 109.47038 * 239.99786 * 17 15 13 20 20 C 1.50696 * 109.47295 * 119.99812 * 17 15 13 21 21 H 1.08001 * 120.00393 * 34.92391 * 20 17 15 22 22 C 1.37877 * 119.99969 * 214.92627 * 20 17 15 23 23 N 1.31513 * 119.99843 * 184.86927 * 22 20 17 24 24 Si 1.86796 * 120.00048 * 4.85955 * 22 20 17 25 25 H 1.48511 * 109.47021 * 94.84800 * 24 22 20 26 26 H 1.48504 * 109.47168 * 214.84314 * 24 22 20 27 27 H 1.48498 * 109.47484 * 334.84638 * 24 22 20 28 28 H 1.08991 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46858 * 300.00173 * 1 2 3 30 30 H 1.09000 * 109.46900 * 59.99529 * 1 2 3 31 31 H 1.09000 * 109.47209 * 239.99877 * 2 1 3 32 32 H 1.09001 * 109.47516 * 120.00037 * 2 1 3 33 33 H 1.08001 * 120.03705 * 359.95898 * 4 3 2 34 34 H 0.96707 * 116.99657 * 180.02562 * 8 6 5 35 35 H 1.08007 * 120.04474 * 180.02562 * 9 5 4 36 36 H 1.08000 * 119.96807 * 180.25341 * 10 9 5 37 37 H 0.97000 * 120.00302 * 325.51967 * 12 11 3 38 38 H 1.09000 * 109.47194 * 270.00363 * 16 15 13 39 39 H 1.08998 * 109.47350 * 30.00497 * 16 15 13 40 40 H 1.08999 * 109.47037 * 150.00250 * 16 15 13 41 41 H 1.09001 * 109.47467 * 174.93898 * 19 17 15 42 42 H 1.08997 * 109.46723 * 294.94693 * 19 17 15 43 43 H 1.09002 * 109.46842 * 54.93926 * 19 17 15 44 44 H 0.97004 * 120.00043 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3591 2.0345 -1.1881 5 6 2.8245 3.3527 -1.1872 6 6 3.1760 4.0131 -2.4577 7 8 3.0618 3.4115 -3.5072 8 8 3.6240 5.2840 -2.4550 9 6 2.9570 4.0430 0.0216 10 6 2.6238 3.4248 1.2051 11 6 2.1650 2.1109 1.2008 12 7 1.8323 1.4866 2.4020 13 6 2.5302 1.7635 3.5212 14 8 3.3952 2.6177 3.5026 15 7 2.2691 1.0936 4.6613 16 6 1.2265 0.0649 4.6839 17 6 3.0273 1.3951 5.8780 18 1 3.7525 2.1815 5.6688 19 6 3.7609 0.1369 6.3467 20 6 2.0823 1.8570 6.9573 21 1 1.0919 1.4319 7.0260 22 6 2.4822 2.8222 7.8569 23 7 1.6949 3.1566 8.8558 24 14 4.1424 3.6548 7.6571 25 1 3.9721 4.9249 6.9065 26 1 4.7153 3.9443 8.9962 27 1 5.0596 2.7573 6.9098 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2562 1.4981 -2.1198 34 1 3.8414 5.6747 -3.3125 35 1 3.3158 5.0617 0.0261 36 1 2.7219 3.9587 2.1388 37 1 1.0987 0.8527 2.4322 38 1 0.2721 0.5206 4.9478 39 1 1.1491 -0.3958 3.6991 40 1 1.4824 -0.6956 5.4217 41 1 4.3953 0.3821 7.1985 42 1 3.0333 -0.6194 6.6412 43 1 4.3768 -0.2485 5.5341 44 1 1.9763 3.8354 9.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605791640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:19 Heat of formation + Delta-G solvation = -90.647866 kcal Electronic energy + Delta-G solvation = -27199.074295 eV Core-core repulsion = 23309.653304 eV Total energy + Delta-G solvation = -3889.420991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89584 -40.13626 -38.66389 -36.22486 -35.77615 -34.96446 -33.91638 -32.70554 -30.77213 -29.86877 -29.20193 -26.46159 -25.33677 -24.61817 -24.09616 -22.26792 -21.40575 -20.53716 -19.29253 -18.31552 -17.85789 -17.39394 -17.12861 -16.60476 -15.77012 -15.66195 -15.30862 -14.99296 -14.60740 -14.15750 -13.92386 -13.82228 -13.56725 -13.44559 -13.30479 -12.81746 -12.67623 -12.53422 -12.40198 -12.10355 -11.98996 -11.87214 -11.70166 -11.51160 -11.26470 -11.12082 -11.10019 -10.76866 -10.74956 -10.54141 -10.24618 -9.80990 -9.60043 -9.26459 -8.87745 -8.66197 -8.23131 -7.73817 -6.23243 -4.25940 0.62288 1.31939 2.42323 2.88823 2.95681 3.27402 3.35287 3.41765 3.48107 3.81677 4.23196 4.32989 4.53687 4.70721 4.91417 4.99763 5.09394 5.15053 5.17779 5.25041 5.36902 5.39815 5.56139 5.70131 5.74047 5.81495 5.94778 6.02074 6.05888 6.15551 6.20993 6.25191 6.30543 6.32137 6.35445 6.48935 6.52231 6.77677 6.86098 6.98726 7.25736 7.43514 7.55154 7.76492 8.19205 8.42559 8.78437 8.94119 9.38964 10.88457 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.003525 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.937026 B = 7940.467470 C = 9161.686714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.029 4.029 5 C -0.163 4.163 6 C 0.533 3.467 7 O -0.525 6.525 8 O -0.513 6.513 9 C -0.041 4.041 10 C -0.138 4.138 11 C 0.225 3.775 12 N -0.689 5.689 13 C 0.696 3.304 14 O -0.579 6.579 15 N -0.596 5.596 16 C 0.083 3.917 17 C 0.234 3.766 18 H 0.070 0.930 19 C -0.147 4.147 20 C -0.526 4.526 21 H 0.078 0.922 22 C 0.080 3.920 23 N -0.889 5.889 24 Si 0.874 3.126 25 H -0.273 1.273 26 H -0.286 1.286 27 H -0.259 1.259 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.411 0.589 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.406 0.594 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.027 0.973 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 -4.215 -18.800 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.140 4.140 4 C -0.048 4.048 5 C -0.166 4.166 6 C 0.379 3.621 7 O -0.416 6.416 8 O -0.324 6.324 9 C -0.060 4.060 10 C -0.158 4.158 11 C 0.127 3.873 12 N -0.337 5.337 13 C 0.398 3.602 14 O -0.456 6.456 15 N -0.330 5.330 16 C -0.061 4.061 17 C 0.133 3.867 18 H 0.088 0.912 19 C -0.206 4.206 20 C -0.564 4.564 21 H 0.096 0.904 22 C -0.124 4.124 23 N -0.526 5.526 24 Si 0.701 3.299 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.184 1.184 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.269 0.731 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.245 0.755 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.472 -3.879 -18.351 18.762 hybrid contribution 0.484 0.446 -0.459 0.802 sum 0.012 -3.433 -18.810 19.120 Atomic orbital electron populations 1.21809 0.94631 1.02009 1.02354 1.20461 0.96122 0.91994 1.03398 1.19532 1.06101 0.96806 0.91531 1.20793 0.93965 0.92391 0.97642 1.18877 1.11356 0.95709 0.90622 1.20873 0.72764 0.79153 0.89332 1.90866 1.51497 1.65369 1.33858 1.84601 1.77873 1.28943 1.40988 1.21329 0.94385 0.99809 0.90518 1.21482 1.01361 0.93204 0.99766 1.17710 0.94244 0.90888 0.84475 1.43006 1.36543 1.47249 1.06952 1.16043 0.81762 0.82318 0.80096 1.90861 1.35964 1.35078 1.83728 1.47785 1.38095 1.37841 1.09323 1.21572 0.92080 0.91895 1.00563 1.19405 0.91958 0.94566 0.80757 0.91173 1.22226 0.99369 0.99431 0.99586 1.21119 1.01649 1.22571 1.11099 0.90434 1.24964 0.97151 0.95651 0.94658 1.69890 1.37143 1.31352 1.14211 0.86875 0.84664 0.80986 0.77379 1.19859 1.21228 1.18375 0.91983 0.92772 0.92152 0.90407 0.90897 0.84524 0.73065 0.84380 0.82759 0.75536 0.92547 0.93508 0.90315 0.92422 0.93116 0.95411 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.82 37.16 0.36 -0.81 16 2 C -0.08 -0.75 5.46 -27.88 -0.15 -0.90 16 3 C -0.14 -1.62 5.14 -104.50 -0.54 -2.15 16 4 C -0.03 -0.34 9.21 -39.21 -0.36 -0.71 16 5 C -0.16 -2.06 5.87 -104.97 -0.62 -2.68 16 6 C 0.53 6.44 8.26 34.48 0.28 6.72 16 7 O -0.53 -7.45 17.12 -19.27 -0.33 -7.78 16 8 O -0.51 -4.72 12.67 -40.64 -0.51 -5.23 16 9 C -0.04 -0.54 9.60 -39.21 -0.38 -0.92 16 10 C -0.14 -2.10 8.67 -39.46 -0.34 -2.44 16 11 C 0.23 3.23 6.29 -83.74 -0.53 2.70 16 12 N -0.69 -10.19 4.60 -14.22 -0.07 -10.26 16 13 C 0.70 13.48 8.12 -86.92 -0.71 12.77 16 14 O -0.58 -13.18 13.06 5.29 0.07 -13.12 16 15 N -0.60 -11.63 2.75 -181.02 -0.50 -12.13 16 16 C 0.08 1.23 9.26 59.84 0.55 1.78 16 17 C 0.23 5.36 2.27 -69.08 -0.16 5.20 16 18 H 0.07 1.78 3.82 -51.93 -0.20 1.58 16 19 C -0.15 -2.95 9.05 37.16 0.34 -2.61 16 20 C -0.53 -13.88 8.82 -34.44 -0.30 -14.18 16 21 H 0.08 2.17 7.66 -52.49 -0.40 1.77 16 22 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 23 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 24 Si 0.87 21.49 27.31 -169.99 -4.64 16.85 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.26 -6.18 6.37 56.52 0.36 -5.82 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.44 7.28 -51.92 -0.38 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.61 8.05 -51.93 -0.42 0.20 16 32 H 0.07 0.67 7.42 -51.93 -0.39 0.29 16 33 H 0.14 1.46 7.64 -52.49 -0.40 1.06 16 34 H 0.41 1.82 9.11 45.56 0.42 2.23 16 35 H 0.14 1.59 7.60 -52.48 -0.40 1.19 16 36 H 0.15 2.72 6.18 -52.49 -0.32 2.40 16 37 H 0.41 4.84 4.78 -40.82 -0.20 4.64 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 40 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.93 6.88 -51.93 -0.36 0.58 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -33.64 361.77 -7.40 -41.04 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.01 Total: 6.51 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.64 Total: 3.90 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.21 Total: -47.64 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.78 Total: -26.12 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.64 Total: 16.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.64 -7.40 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605791640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.605 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds