Wall clock time and date at job start Tue Mar 31 2020 13:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47264 * 2 1 4 4 C 1.37660 * 119.96276 * 265.02259 * 3 2 1 5 5 C 1.39794 * 119.92306 * 179.97438 * 4 3 2 6 6 C 1.47446 * 120.07891 * 179.97438 * 5 4 3 7 7 O 1.21503 * 120.00145 * 359.97438 * 6 5 4 8 8 O 1.34754 * 119.99670 * 179.97438 * 6 5 4 9 9 C 1.39830 * 119.84202 * 0.02562 * 5 4 3 10 10 C 1.37616 * 119.91998 * 359.73898 * 9 5 4 11 11 C 1.39134 * 119.96128 * 85.00392 * 3 2 1 12 12 N 1.39400 * 119.91894 * 359.97438 * 11 3 2 13 13 C 1.34775 * 119.99710 * 145.50948 * 12 11 3 14 14 O 1.21581 * 120.00384 * 4.53080 * 13 12 11 15 15 N 1.34781 * 119.99935 * 184.53100 * 13 12 11 16 16 C 1.46488 * 120.00037 * 359.97438 * 15 13 12 17 17 C 1.46502 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.09002 * 109.47173 * 359.97438 * 17 15 13 19 19 C 1.53004 * 109.47038 * 239.99786 * 17 15 13 20 20 C 1.50696 * 109.47295 * 119.99812 * 17 15 13 21 21 H 1.08001 * 120.00393 * 34.92391 * 20 17 15 22 22 C 1.37877 * 119.99969 * 214.92627 * 20 17 15 23 23 N 1.31513 * 119.99843 * 184.86927 * 22 20 17 24 24 Si 1.86796 * 120.00048 * 4.85955 * 22 20 17 25 25 H 1.48511 * 109.47021 * 94.84800 * 24 22 20 26 26 H 1.48504 * 109.47168 * 214.84314 * 24 22 20 27 27 H 1.48498 * 109.47484 * 334.84638 * 24 22 20 28 28 H 1.08991 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46858 * 300.00173 * 1 2 3 30 30 H 1.09000 * 109.46900 * 59.99529 * 1 2 3 31 31 H 1.09000 * 109.47209 * 239.99877 * 2 1 3 32 32 H 1.09001 * 109.47516 * 120.00037 * 2 1 3 33 33 H 1.08001 * 120.03705 * 359.95898 * 4 3 2 34 34 H 0.96707 * 116.99657 * 180.02562 * 8 6 5 35 35 H 1.08007 * 120.04474 * 180.02562 * 9 5 4 36 36 H 1.08000 * 119.96807 * 180.25341 * 10 9 5 37 37 H 0.97000 * 120.00302 * 325.51967 * 12 11 3 38 38 H 1.09000 * 109.47194 * 270.00363 * 16 15 13 39 39 H 1.08998 * 109.47350 * 30.00497 * 16 15 13 40 40 H 1.08999 * 109.47037 * 150.00250 * 16 15 13 41 41 H 1.09001 * 109.47467 * 174.93898 * 19 17 15 42 42 H 1.08997 * 109.46723 * 294.94693 * 19 17 15 43 43 H 1.09002 * 109.46842 * 54.93926 * 19 17 15 44 44 H 0.97004 * 120.00043 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3591 2.0345 -1.1881 5 6 2.8245 3.3527 -1.1872 6 6 3.1760 4.0131 -2.4577 7 8 3.0618 3.4115 -3.5072 8 8 3.6240 5.2840 -2.4550 9 6 2.9570 4.0430 0.0216 10 6 2.6238 3.4248 1.2051 11 6 2.1650 2.1109 1.2008 12 7 1.8323 1.4866 2.4020 13 6 2.5302 1.7635 3.5212 14 8 3.3952 2.6177 3.5026 15 7 2.2691 1.0936 4.6613 16 6 1.2265 0.0649 4.6839 17 6 3.0273 1.3951 5.8780 18 1 3.7525 2.1815 5.6688 19 6 3.7609 0.1369 6.3467 20 6 2.0823 1.8570 6.9573 21 1 1.0919 1.4319 7.0260 22 6 2.4822 2.8222 7.8569 23 7 1.6949 3.1566 8.8558 24 14 4.1424 3.6548 7.6571 25 1 3.9721 4.9249 6.9065 26 1 4.7153 3.9443 8.9962 27 1 5.0596 2.7573 6.9098 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2562 1.4981 -2.1198 34 1 3.8414 5.6747 -3.3125 35 1 3.3158 5.0617 0.0261 36 1 2.7219 3.9587 2.1388 37 1 1.0987 0.8527 2.4322 38 1 0.2721 0.5206 4.9478 39 1 1.1491 -0.3958 3.6991 40 1 1.4824 -0.6956 5.4217 41 1 4.3953 0.3821 7.1985 42 1 3.0333 -0.6194 6.6412 43 1 4.3768 -0.2485 5.5341 44 1 1.9763 3.8354 9.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605791640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:19 Heat of formation + Delta-G solvation = -112.384049 kcal Electronic energy + Delta-G solvation = -27200.016847 eV Core-core repulsion = 23309.653304 eV Total energy + Delta-G solvation = -3890.363542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08378 -41.20840 -39.83671 -37.38397 -37.06626 -36.16649 -34.93292 -34.59713 -32.34403 -30.93885 -30.24535 -27.80407 -27.24362 -25.73299 -24.90924 -23.47223 -22.66602 -21.55782 -20.74702 -19.64493 -19.11474 -18.76821 -18.27336 -18.04101 -17.08486 -16.80283 -16.61266 -16.30577 -15.78871 -15.54200 -15.06476 -14.86602 -14.72061 -14.53260 -14.48108 -14.37585 -14.15614 -13.93781 -13.65112 -13.30757 -13.07647 -12.98086 -12.94175 -12.74426 -12.58206 -12.54985 -12.31469 -12.09813 -11.86023 -11.79500 -11.74108 -11.46702 -11.26679 -10.98434 -10.76959 -9.89612 -9.57384 -9.09925 -8.36593 -6.40347 -0.41098 0.31289 1.27485 1.35383 1.39225 1.44149 1.62562 2.09132 2.10372 2.28502 2.72926 2.85367 3.12654 3.66537 3.77703 4.05942 4.12749 4.16484 4.21411 4.35656 4.45085 4.48100 4.54688 4.61523 4.73902 4.76198 4.78002 4.92315 4.94611 5.06325 5.08945 5.13083 5.14526 5.21164 5.29860 5.36212 5.41591 5.45697 5.54599 5.57631 5.75972 5.86711 5.88197 6.29210 6.65548 6.92291 6.98267 7.25622 7.48073 8.78657 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.003525 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.937026 B = 7940.467470 C = 9161.686714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.028 4.028 5 C -0.165 4.165 6 C 0.540 3.460 7 O -0.547 6.547 8 O -0.507 6.507 9 C -0.040 4.040 10 C -0.158 4.158 11 C 0.204 3.796 12 N -0.671 5.671 13 C 0.692 3.308 14 O -0.619 6.619 15 N -0.605 5.605 16 C 0.078 3.922 17 C 0.235 3.765 18 H 0.046 0.954 19 C -0.140 4.140 20 C -0.518 4.518 21 H 0.054 0.946 22 C 0.030 3.970 23 N -0.934 5.934 24 Si 0.924 3.076 25 H -0.286 1.286 26 H -0.277 1.277 27 H -0.248 1.248 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.154 0.846 34 H 0.433 0.567 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.421 0.579 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 -5.871 -21.281 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.124 4.124 4 C -0.047 4.047 5 C -0.167 4.167 6 C 0.386 3.614 7 O -0.439 6.439 8 O -0.321 6.321 9 C -0.059 4.059 10 C -0.179 4.179 11 C 0.106 3.894 12 N -0.320 5.320 13 C 0.394 3.606 14 O -0.499 6.499 15 N -0.339 5.339 16 C -0.064 4.064 17 C 0.133 3.867 18 H 0.063 0.937 19 C -0.198 4.198 20 C -0.556 4.556 21 H 0.072 0.928 22 C -0.170 4.170 23 N -0.573 5.573 24 Si 0.750 3.250 25 H -0.212 1.212 26 H -0.202 1.202 27 H -0.172 1.172 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.172 0.828 34 H 0.295 0.705 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.262 0.738 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.277 -5.555 -20.882 21.610 hybrid contribution 0.356 0.985 0.147 1.057 sum 0.079 -4.570 -20.735 21.233 Atomic orbital electron populations 1.21808 0.93464 1.03222 1.02139 1.20578 0.97015 0.89968 1.04437 1.19777 1.04423 0.97969 0.90250 1.21051 0.93191 0.92196 0.98271 1.19072 1.10783 0.96179 0.90708 1.20694 0.72358 0.79722 0.88587 1.90862 1.52593 1.66107 1.34388 1.84556 1.77078 1.27567 1.42858 1.21353 0.94189 1.00306 0.90065 1.21325 1.03152 0.94082 0.99292 1.17871 0.95655 0.90912 0.84944 1.42632 1.36278 1.47237 1.05903 1.16165 0.81731 0.81746 0.80948 1.90838 1.37857 1.36691 1.84559 1.47557 1.38968 1.38922 1.08426 1.21817 0.90322 0.90865 1.03438 1.19159 0.91122 0.95404 0.81052 0.93654 1.22086 0.99590 0.98207 0.99961 1.21364 1.01170 1.21578 1.11537 0.92757 1.25609 0.99969 0.96693 0.94730 1.69990 1.39001 1.32774 1.15527 0.86078 0.81848 0.79601 0.77502 1.21193 1.20222 1.17223 0.90072 0.93311 0.92124 0.88607 0.90663 0.82833 0.70496 0.83366 0.85856 0.73831 0.93098 0.89090 0.89810 0.93018 0.91614 0.93399 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.82 71.98 0.71 -1.11 16 2 C -0.08 -1.22 5.46 29.85 0.16 -1.06 16 3 C -0.12 -2.60 5.14 -19.79 -0.10 -2.70 16 4 C -0.03 -0.61 9.21 22.51 0.21 -0.40 16 5 C -0.17 -3.90 5.87 -20.09 -0.12 -4.02 16 6 C 0.54 11.97 8.26 70.25 0.58 12.55 16 7 O -0.55 -14.34 17.12 19.83 0.34 -14.00 16 8 O -0.51 -8.21 12.67 -56.65 -0.72 -8.92 16 9 C -0.04 -1.04 9.60 22.51 0.22 -0.82 16 10 C -0.16 -4.89 8.67 22.35 0.19 -4.69 16 11 C 0.20 5.66 6.29 38.38 0.24 5.90 16 12 N -0.67 -19.06 4.60 -317.16 -1.46 -20.52 16 13 C 0.69 26.63 8.12 179.05 1.45 28.08 16 14 O -0.62 -28.80 13.06 -3.97 -0.05 -28.85 16 15 N -0.61 -23.12 2.75 -844.87 -2.33 -25.45 16 16 C 0.08 2.16 9.26 127.77 1.18 3.35 16 17 C 0.24 10.72 2.27 44.24 0.10 10.82 16 18 H 0.05 2.32 3.82 -2.39 -0.01 2.31 16 19 C -0.14 -5.37 9.05 71.98 0.65 -4.72 16 20 C -0.52 -27.73 8.82 25.60 0.23 -27.50 16 21 H 0.05 3.10 7.66 -2.91 -0.02 3.08 16 22 C 0.03 1.68 5.47 84.65 0.46 2.14 16 23 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 24 Si 0.92 45.23 27.31 68.60 1.87 47.11 16 25 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.25 -11.60 6.37 99.48 0.63 -10.97 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.65 7.28 -2.38 -0.02 0.63 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 1.12 8.05 -2.39 -0.02 1.10 16 32 H 0.07 1.11 7.42 -2.39 -0.02 1.09 16 33 H 0.15 2.80 7.64 -2.91 -0.02 2.78 16 34 H 0.43 2.73 9.11 -74.05 -0.67 2.05 16 35 H 0.15 3.37 7.60 -2.91 -0.02 3.34 16 36 H 0.12 4.62 6.18 -2.91 -0.02 4.60 16 37 H 0.42 9.08 4.78 -92.71 -0.44 8.64 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.69 6.43 -2.39 -0.02 1.67 16 40 H 0.08 2.25 6.53 -2.39 -0.02 2.24 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.30 6.88 -2.39 -0.02 2.28 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -74.85 361.77 3.99 -70.86 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.13 Total: 19.78 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.17 Total: 15.80 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -3.48 Total: -101.77 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.43 Total: -51.78 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.87 Total: 47.11 kcal Total: -74.85 3.99 -70.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605791640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.524 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds