Wall clock time and date at job start Tue Mar 31 2020 12:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.56997 * 2 1 4 4 C 1.34780 * 120.00343 * 300.15496 * 3 2 1 5 5 O 1.21591 * 119.99763 * 359.97438 * 4 3 2 6 6 N 1.34768 * 119.99977 * 180.02562 * 4 3 2 7 7 C 1.40031 * 119.99819 * 175.49465 * 6 4 3 8 8 C 1.38913 * 120.00151 * 214.85411 * 7 6 4 9 9 C 1.38010 * 119.99434 * 179.74811 * 8 7 6 10 10 C 1.38899 * 120.00376 * 0.54942 * 9 8 7 11 11 O 1.35786 * 119.99730 * 179.72695 * 10 9 8 12 12 C 1.34812 * 116.99797 * 185.32204 * 11 10 9 13 13 H 1.07998 * 120.00320 * 354.96041 * 12 11 10 14 14 C 1.38628 * 120.00168 * 174.96394 * 12 11 10 15 15 N 1.31571 * 120.00397 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99911 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47430 * 90.00006 * 16 14 12 18 18 H 1.48500 * 109.47205 * 210.00401 * 16 14 12 19 19 H 1.48503 * 109.46647 * 329.99787 * 16 14 12 20 20 C 1.38905 * 120.00199 * 359.70059 * 10 9 8 21 21 C 1.38007 * 119.99819 * 0.02704 * 20 10 9 22 22 C 1.53179 * 109.52224 * 120.15661 * 2 1 3 23 23 C 1.53171 * 109.10788 * 176.93479 * 22 2 1 24 24 C 1.53092 * 109.16538 * 302.97455 * 23 22 2 25 25 O 1.42901 * 109.41509 * 57.60955 * 24 23 22 26 26 C 1.42907 * 114.09839 * 298.84594 * 25 24 23 27 27 H 1.08996 * 109.47684 * 299.84359 * 1 2 3 28 28 H 1.09002 * 109.46801 * 59.84629 * 1 2 3 29 29 H 1.09004 * 109.46658 * 179.84052 * 1 2 3 30 30 H 0.97003 * 119.99964 * 120.15927 * 3 2 1 31 31 H 0.97001 * 120.00566 * 355.49437 * 6 4 3 32 32 H 1.07997 * 119.99914 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.99198 * 180.27294 * 9 8 7 34 34 H 0.96995 * 120.00567 * 179.97438 * 15 14 12 35 35 H 1.07996 * 119.99835 * 180.02562 * 20 10 9 36 36 H 1.08004 * 119.99719 * 180.02562 * 21 20 10 37 37 H 1.08998 * 109.54505 * 57.01867 * 22 2 1 38 38 H 1.09005 * 109.54165 * 296.84692 * 22 2 1 39 39 H 1.09005 * 109.52863 * 62.88198 * 23 22 2 40 40 H 1.09001 * 109.52050 * 183.00483 * 23 22 2 41 41 H 1.09001 * 109.48052 * 177.59698 * 24 23 22 42 42 H 1.09007 * 109.47569 * 297.62704 * 24 23 22 43 43 H 1.08992 * 109.48022 * 181.13913 * 26 25 24 44 44 H 1.09009 * 109.47406 * 301.16392 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0207 1.3804 0.0000 4 6 1.6940 2.2118 -1.0092 5 8 0.9924 1.8160 -1.9200 6 7 2.1459 3.4815 -1.0094 7 6 1.8858 4.3170 -2.1026 8 6 2.8287 5.2575 -2.4978 9 6 2.5744 6.0774 -3.5785 10 6 1.3710 5.9699 -4.2639 11 8 1.1187 6.7805 -5.3236 12 6 -0.1089 6.7020 -5.8754 13 1 -0.8117 5.9604 -5.5258 14 6 -0.4690 7.5734 -6.8918 15 7 -1.6668 7.4965 -7.4307 16 14 0.7470 8.8557 -7.4972 17 1 1.5535 8.2880 -8.6073 18 1 0.0078 10.0488 -7.9822 19 1 1.6463 9.2498 -6.3831 20 6 0.4260 5.0331 -3.8655 21 6 0.6826 4.2093 -2.7883 22 6 2.0419 -0.7253 1.2483 23 6 3.5716 -0.7870 1.2005 24 6 4.0064 -1.4821 -0.0924 25 8 3.4731 -0.7755 -1.2141 26 6 2.0453 -0.7262 -1.2476 27 1 -0.3634 0.5114 0.8913 28 1 -0.3633 0.5162 -0.8886 29 1 -0.3633 -1.0277 -0.0029 30 1 2.5809 1.6960 0.7264 31 1 2.6513 3.8166 -0.2523 32 1 3.7625 5.3440 -1.9622 33 1 3.3093 6.8056 -3.8885 34 1 -1.9189 8.1064 -8.1415 35 1 -0.5094 4.9493 -4.3986 36 1 -0.0520 3.4806 -2.4788 37 1 1.6367 -1.7368 1.2742 38 1 1.7265 -0.1833 2.1400 39 1 3.9780 0.2242 1.2247 40 1 3.9405 -1.3484 2.0589 41 1 5.0947 -1.4909 -0.1521 42 1 3.6337 -2.5065 -0.0973 43 1 1.7209 -0.1904 -2.1396 44 1 1.6470 -1.7407 -1.2679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645649720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:19 Heat of formation + Delta-G solvation = -91.412726 kcal Electronic energy + Delta-G solvation = -27010.199837 eV Core-core repulsion = 23120.745679 eV Total energy + Delta-G solvation = -3889.454157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.97014 -40.89717 -39.96964 -38.28230 -36.38767 -35.40835 -34.37710 -33.48124 -32.21844 -31.84283 -29.42930 -27.89085 -27.08725 -26.11525 -24.24733 -23.62585 -22.89413 -21.87076 -20.64531 -20.00872 -19.38103 -19.07940 -18.16883 -17.30592 -16.98650 -16.72518 -16.38704 -15.90713 -15.84023 -15.66154 -15.54750 -15.42793 -15.26149 -14.85350 -14.42728 -14.17936 -14.09715 -13.89233 -13.58334 -13.41968 -13.30567 -13.26700 -12.89884 -12.83455 -12.68263 -12.44583 -12.09266 -12.01264 -11.76836 -11.47796 -11.38715 -11.11028 -10.81443 -10.67786 -10.55924 -9.87033 -9.82563 -8.60194 -8.47899 -6.20000 0.52402 0.58325 1.33206 1.38448 1.54274 1.63657 2.16636 2.30415 2.79836 2.96390 3.06201 3.19086 3.25322 3.60262 3.82145 3.85643 4.02502 4.10700 4.13359 4.32034 4.41254 4.49414 4.49697 4.64741 4.70215 4.73373 4.75541 4.81163 4.86579 4.94243 5.03783 5.08180 5.12741 5.21857 5.27836 5.33707 5.40828 5.53782 5.58135 5.66496 5.77486 5.94623 6.05528 6.25159 6.31748 6.85943 7.10446 7.59114 7.62466 8.64177 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028373 B = 0.002561 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.621013 B =10929.831091 C =11240.453151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 N -0.712 5.712 4 C 0.699 3.301 5 O -0.611 6.611 6 N -0.665 5.665 7 C 0.093 3.907 8 C -0.083 4.083 9 C -0.166 4.166 10 C 0.109 3.891 11 O -0.242 6.242 12 C -0.399 4.399 13 H 0.075 0.925 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.976 3.024 17 H -0.267 1.267 18 H -0.268 1.268 19 H -0.257 1.257 20 C -0.222 4.222 21 C -0.080 4.080 22 C -0.117 4.117 23 C -0.151 4.151 24 C 0.045 3.955 25 O -0.402 6.402 26 C 0.048 3.952 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.410 0.590 31 H 0.421 0.579 32 H 0.170 0.830 33 H 0.143 0.857 34 H 0.284 0.716 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.289 -16.801 24.400 32.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.076 3.924 3 N -0.368 5.368 4 C 0.400 3.600 5 O -0.491 6.491 6 N -0.315 5.315 7 C -0.001 4.001 8 C -0.103 4.103 9 C -0.186 4.186 10 C 0.060 3.940 11 O -0.149 6.149 12 C -0.475 4.475 13 H 0.092 0.908 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.797 3.203 17 H -0.192 1.192 18 H -0.193 1.193 19 H -0.181 1.181 20 C -0.242 4.242 21 C -0.101 4.101 22 C -0.155 4.155 23 C -0.188 4.188 24 C -0.031 4.031 25 O -0.321 6.321 26 C -0.029 4.029 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.247 0.753 31 H 0.259 0.741 32 H 0.187 0.813 33 H 0.161 0.839 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.787 -16.911 23.250 31.465 hybrid contribution -0.313 0.530 -0.148 0.633 sum 12.474 -16.381 23.101 30.945 Atomic orbital electron populations 1.22152 0.93958 1.03238 1.02728 1.20901 0.94267 0.80248 0.96958 1.44923 1.55926 1.11116 1.24835 1.16141 0.80217 0.80790 0.82835 1.90871 1.43176 1.76454 1.38614 1.42142 1.58998 1.09784 1.20578 1.17203 0.94069 0.96018 0.92840 1.20806 0.98532 0.95059 0.95902 1.20367 0.95810 1.04465 0.97951 1.19658 0.95407 0.90920 0.87995 1.83501 1.33150 1.57186 1.41079 1.20678 0.88883 1.19359 1.18620 0.90755 1.25345 0.98299 0.99781 0.95689 1.69750 1.20310 1.39864 1.26914 0.85145 0.78349 0.77677 0.79091 1.19158 1.19263 1.18114 1.21114 1.01109 1.00352 1.01613 1.20916 0.96554 0.97360 0.95224 1.21910 0.96084 1.01825 0.95643 1.22187 0.95497 1.02480 0.98664 1.22858 0.99632 0.95013 0.85569 1.87991 1.20344 1.76935 1.46825 1.23073 0.81052 0.99807 0.99018 0.91346 0.93303 0.90069 0.75293 0.74079 0.81252 0.83874 0.90596 0.87832 0.85970 0.88595 0.88820 0.91093 0.88044 0.88267 0.92259 0.90511 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.42 71.98 0.61 -2.34 16 2 C 0.16 2.67 0.68 3.76 0.00 2.67 16 3 N -0.71 -12.48 4.75 -437.30 -2.08 -14.56 16 4 C 0.70 18.87 7.83 179.06 1.40 20.27 16 5 O -0.61 -22.28 10.00 -4.00 -0.04 -22.32 16 6 N -0.67 -16.13 5.35 -317.05 -1.69 -17.82 16 7 C 0.09 3.09 6.30 38.15 0.24 3.33 16 8 C -0.08 -2.49 9.96 22.38 0.22 -2.27 16 9 C -0.17 -6.29 9.98 22.37 0.22 -6.07 16 10 C 0.11 5.33 6.65 22.59 0.15 5.48 16 11 O -0.24 -13.50 8.58 -22.95 -0.20 -13.69 16 12 C -0.40 -24.51 9.94 67.91 0.68 -23.84 16 13 H 0.07 4.87 5.43 -2.91 -0.02 4.85 16 14 C 0.01 0.40 5.49 84.83 0.47 0.86 16 15 N -0.93 -57.35 13.96 21.61 0.30 -57.05 16 16 Si 0.98 46.41 28.62 68.60 1.96 48.37 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 20 C -0.22 -10.82 9.16 22.37 0.20 -10.62 16 21 C -0.08 -3.34 8.69 22.38 0.19 -3.14 16 22 C -0.12 -0.94 4.85 30.71 0.15 -0.80 16 23 C -0.15 -1.10 5.95 30.68 0.18 -0.92 16 24 C 0.05 0.56 6.84 72.01 0.49 1.05 16 25 O -0.40 -8.93 10.67 -148.98 -1.59 -10.52 16 26 C 0.05 1.05 5.42 72.07 0.39 1.44 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.30 6.16 -2.39 -0.01 1.28 16 29 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.41 4.36 7.54 -92.71 -0.70 3.66 16 31 H 0.42 6.26 8.84 -92.71 -0.82 5.44 16 32 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 35 H 0.10 5.61 5.63 -2.91 -0.02 5.59 16 36 H 0.12 5.24 6.22 -2.91 -0.02 5.22 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.07 0.54 7.11 -2.38 -0.02 0.52 16 40 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.08 2.36 6.14 -2.39 -0.01 2.35 16 44 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -79.65 352.05 1.80 -77.85 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.47 Total: 24.63 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.60 Total: -14.88 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -3.47 Total: -89.43 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -1.83 Total: -46.54 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.96 Total: 48.37 kcal Total: -79.65 1.80 -77.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645649720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.567 kcal (2) G-P(sol) polarization free energy of solvation -79.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds