Wall clock time and date at job start Tue Mar 31 2020 12:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.44775 * 2 1 4 4 C 1.53038 * 109.46230 * 240.03140 * 2 1 3 5 5 C 1.53193 * 109.31082 * 178.61694 * 4 2 1 6 6 N 1.46923 * 108.77654 * 54.63556 * 5 4 2 7 7 C 1.34781 * 120.63145 * 126.36822 * 6 5 4 8 8 O 1.21588 * 119.99778 * 4.96119 * 7 6 5 9 9 N 1.34775 * 120.00274 * 184.96113 * 7 6 5 10 10 C 1.40025 * 120.00241 * 171.09379 * 9 7 6 11 11 C 1.38912 * 119.99748 * 28.15043 * 10 9 7 12 12 C 1.38012 * 119.99520 * 179.74131 * 11 10 9 13 13 C 1.38904 * 119.99968 * 0.53153 * 12 11 10 14 14 O 1.35777 * 119.99706 * 179.70078 * 13 12 11 15 15 C 1.34820 * 116.99984 * 170.98774 * 14 13 12 16 16 H 1.08000 * 120.00159 * 354.44290 * 15 14 13 17 17 C 1.38634 * 120.00029 * 174.43632 * 15 14 13 18 18 N 1.31580 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99967 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47227 * 90.00039 * 19 17 15 21 21 H 1.48493 * 109.47360 * 210.00036 * 19 17 15 22 22 H 1.48497 * 109.47311 * 330.00496 * 19 17 15 23 23 C 1.38903 * 120.00059 * 359.71834 * 13 12 11 24 24 C 1.38009 * 120.00335 * 0.03014 * 23 13 12 25 25 C 1.46927 * 118.73858 * 306.63880 * 6 5 4 26 26 C 1.52766 * 109.00496 * 53.31209 * 25 6 5 27 27 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47086 * 299.97262 * 1 2 3 29 29 H 1.09000 * 109.46787 * 59.96877 * 1 2 3 30 30 H 0.96702 * 114.00252 * 60.03031 * 3 2 1 31 31 H 1.08994 * 109.49930 * 58.66479 * 4 2 1 32 32 H 1.08998 * 109.52019 * 298.58160 * 4 2 1 33 33 H 1.08997 * 109.58734 * 294.84704 * 5 4 2 34 34 H 1.09002 * 109.69789 * 174.49193 * 5 4 2 35 35 H 0.97008 * 119.99237 * 350.81962 * 9 7 6 36 36 H 1.07999 * 119.99912 * 359.97355 * 11 10 9 37 37 H 1.07993 * 119.99799 * 180.22917 * 12 11 10 38 38 H 0.96995 * 119.99511 * 179.97438 * 18 17 15 39 39 H 1.07998 * 119.99379 * 179.97438 * 23 13 12 40 40 H 1.07998 * 119.99982 * 179.97438 * 24 23 13 41 41 H 1.09004 * 109.58283 * 173.14622 * 25 6 5 42 42 H 1.08997 * 109.58880 * 293.57451 * 25 6 5 43 43 H 1.09002 * 109.56219 * 185.55118 * 26 25 6 44 44 H 1.09003 * 109.38134 * 65.51666 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0058 1.3475 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0002 7 6 4.9614 -2.2578 0.0003 8 8 5.4325 -2.6527 -1.0487 9 7 5.3327 -2.8291 1.1632 10 6 6.1122 -3.9923 1.1543 11 6 6.9738 -4.2430 0.0939 12 6 7.7459 -5.3868 0.0878 13 6 7.6534 -6.2928 1.1367 14 8 8.4086 -7.4211 1.1277 15 6 8.4141 -8.1630 2.2534 16 1 7.9080 -7.8057 3.1381 17 6 9.0693 -9.3845 2.2754 18 7 9.6862 -9.8197 1.1977 19 14 9.0775 -10.4120 3.8354 20 1 7.9042 -11.3222 3.8348 21 1 10.3260 -11.2139 3.8934 22 1 9.0088 -9.5167 5.0181 23 6 6.7880 -6.0447 2.1945 24 6 6.0197 -4.8983 2.2032 25 6 3.5671 -0.6922 1.2644 26 6 2.0398 -0.7207 1.2502 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5134 0.8902 29 1 -0.3633 0.5143 -0.8897 30 1 1.7207 1.8653 0.7653 31 1 1.6574 -0.2208 -2.1398 32 1 1.6979 -1.7556 -1.2387 33 1 3.9144 0.3409 -1.3672 34 1 3.9438 -1.2831 -2.0984 35 1 5.0633 -2.4321 2.0063 36 1 7.0421 -3.5409 -0.7239 37 1 8.4185 -5.5799 -0.7347 38 1 10.1449 -10.6742 1.2133 39 1 6.7159 -6.7493 3.0097 40 1 5.3465 -4.7056 3.0255 41 1 3.9346 -1.2907 2.0981 42 1 3.9096 0.3370 1.3717 43 1 1.6571 -0.2206 2.1399 44 1 1.6973 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647105650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:51 Heat of formation + Delta-G solvation = -65.035415 kcal Electronic energy + Delta-G solvation = -26641.920012 eV Core-core repulsion = 22753.609661 eV Total energy + Delta-G solvation = -3888.310351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85727 -39.40676 -38.53213 -36.62081 -35.56507 -34.07944 -32.61122 -32.10301 -31.42331 -30.12222 -28.95322 -27.44331 -25.29526 -23.85669 -23.74739 -22.19310 -21.59963 -20.69171 -19.60722 -18.54506 -17.84400 -17.14456 -16.75237 -16.39611 -15.65407 -15.57399 -15.20465 -14.77123 -14.51785 -14.43141 -14.27530 -13.94273 -13.66479 -13.44793 -13.37849 -12.98886 -12.73441 -12.58983 -12.32787 -12.31625 -12.22061 -11.77076 -11.69835 -11.53205 -11.48999 -11.47924 -11.03192 -10.74758 -10.68823 -10.43681 -10.34306 -9.74612 -9.57707 -9.18433 -8.80374 -8.61663 -8.12883 -6.81988 -6.39170 -3.97104 2.21573 2.31675 2.61112 3.14293 3.15891 3.20875 3.31488 3.74070 3.85647 4.01036 4.20182 4.32219 4.41973 4.64967 4.67547 4.90301 5.00785 5.07656 5.15569 5.19771 5.24724 5.26369 5.40632 5.42469 5.53997 5.59079 5.60031 5.66011 5.70115 5.87538 5.95651 6.16236 6.25004 6.29812 6.45543 6.74125 6.95966 6.98792 7.16054 7.23575 7.27628 7.30553 7.48602 7.88396 8.02914 8.05714 8.67584 9.06232 9.78602 10.79140 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.002311 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.948935 B =12112.466502 C =12566.372879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.131 3.869 3 O -0.555 6.555 4 C -0.121 4.121 5 C 0.135 3.865 6 N -0.629 5.629 7 C 0.704 3.296 8 O -0.573 6.573 9 N -0.674 5.674 10 C 0.056 3.944 11 C -0.081 4.081 12 C -0.176 4.176 13 C 0.142 3.858 14 O -0.180 6.180 15 C -0.389 4.389 16 H 0.090 0.910 17 C 0.037 3.963 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.216 4.216 24 C -0.098 4.098 25 C 0.117 3.883 26 C -0.162 4.162 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.374 0.626 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.396 0.604 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.269 0.731 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.111 21.094 2.216 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 O -0.361 6.361 4 C -0.159 4.159 5 C 0.012 3.988 6 N -0.367 5.367 7 C 0.407 3.593 8 O -0.450 6.450 9 N -0.323 5.323 10 C -0.037 4.037 11 C -0.101 4.101 12 C -0.196 4.196 13 C 0.089 3.911 14 O -0.084 6.084 15 C -0.466 4.466 16 H 0.107 0.893 17 C -0.167 4.167 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.236 4.236 24 C -0.119 4.119 25 C -0.007 4.007 26 C -0.200 4.200 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.221 0.779 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.233 0.767 36 H 0.163 0.837 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.231 20.297 0.633 26.633 hybrid contribution -0.703 -0.201 2.017 2.145 sum -17.935 20.096 2.649 27.065 Atomic orbital electron populations 1.22487 0.95564 1.02914 1.02577 1.21137 0.92361 0.82408 0.95080 1.86581 1.77139 1.22980 1.49422 1.21950 0.96499 1.00465 0.96979 1.21351 0.92384 0.99205 0.85892 1.47267 1.45358 1.36917 1.07183 1.15855 0.79723 0.79496 0.84252 1.90840 1.57929 1.65218 1.31036 1.42483 1.55067 1.27620 1.07125 1.17150 0.98659 0.88537 0.99371 1.21194 0.93282 0.97477 0.98135 1.20230 1.04580 0.94968 0.99852 1.19453 0.90149 0.88143 0.93370 1.84012 1.57476 1.29297 1.37566 1.21277 1.35906 1.00876 0.88504 0.89272 1.25276 0.96214 0.96305 0.98871 1.70052 1.31813 1.20246 1.27772 0.85728 0.78120 0.79532 0.80123 1.19973 1.20317 1.19273 1.20936 1.01539 0.99339 1.01776 1.20378 1.00154 0.93595 0.97789 1.21411 0.93666 0.99553 0.86054 1.22553 0.96405 1.02506 0.98575 0.91490 0.92277 0.91625 0.77888 0.89978 0.90181 0.91013 0.88766 0.76722 0.83680 0.86197 0.92104 0.85230 0.87409 0.90619 0.90779 0.90392 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 8.81 37.16 0.33 -0.57 16 2 C 0.13 0.83 0.98 -90.58 -0.09 0.74 16 3 O -0.56 -3.59 11.71 -35.23 -0.41 -4.01 16 4 C -0.12 -0.97 5.11 -26.61 -0.14 -1.11 16 5 C 0.13 1.41 6.18 -3.71 -0.02 1.38 16 6 N -0.63 -7.11 2.98 -178.76 -0.53 -7.64 16 7 C 0.70 10.83 8.19 -86.92 -0.71 10.12 16 8 O -0.57 -11.01 12.73 5.29 0.07 -10.94 16 9 N -0.67 -9.85 5.26 -14.18 -0.07 -9.92 16 10 C 0.06 1.03 6.43 -83.62 -0.54 0.49 16 11 C -0.08 -1.68 8.81 -39.41 -0.35 -2.02 16 12 C -0.18 -4.02 9.99 -39.42 -0.39 -4.42 16 13 C 0.14 3.55 6.64 -39.09 -0.26 3.29 16 14 O -0.18 -5.24 9.76 0.00 0.00 -5.24 16 15 C -0.39 -10.99 9.40 30.88 0.29 -10.70 16 16 H 0.09 2.31 5.38 -52.49 -0.28 2.03 16 17 C 0.04 1.04 5.49 -17.51 -0.10 0.94 16 18 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 19 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.22 -4.73 9.10 -39.42 -0.36 -5.09 16 24 C -0.10 -1.81 9.94 -39.42 -0.39 -2.20 16 25 C 0.12 0.89 6.16 -3.93 -0.02 0.87 16 26 C -0.16 -0.96 5.07 -26.83 -0.14 -1.10 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.37 1.07 9.04 45.56 0.41 1.48 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 34 H 0.09 1.15 7.03 -51.93 -0.37 0.79 16 35 H 0.40 4.37 6.29 -40.82 -0.26 4.11 16 36 H 0.15 3.03 5.55 -52.49 -0.29 2.73 16 37 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.13 2.80 5.79 -52.49 -0.30 2.49 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.08 0.51 5.59 -51.93 -0.29 0.22 16 42 H 0.07 0.52 7.81 -51.93 -0.41 0.12 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -34.71 355.00 -7.88 -42.60 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.13 Total: 8.48 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.89 Total: -9.37 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.15 Total: -42.54 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.35 Total: -20.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.71 -7.88 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647105650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.439 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds