Wall clock time and date at job start Tue Mar 31 2020 13:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40100 * 120.00428 * 2 1 4 4 C 1.34777 * 120.00297 * 75.26697 * 3 2 1 5 5 O 1.21613 * 119.99779 * 359.73448 * 4 3 2 6 6 C 1.47432 * 120.00273 * 179.72494 * 4 3 2 7 7 C 1.39217 * 120.28043 * 355.35605 * 6 4 3 8 8 C 1.38221 * 120.09057 * 180.02562 * 7 6 4 9 9 C 1.38834 * 120.67634 * 359.97127 * 8 7 6 10 10 C 1.37598 * 120.56662 * 0.02655 * 9 8 7 11 11 C 1.40704 * 119.88081 * 359.69959 * 10 9 8 12 12 C 1.40893 * 120.32323 * 180.27359 * 11 10 9 13 13 H 1.07998 * 120.00291 * 215.83285 * 12 11 10 14 14 C 1.40279 * 120.00139 * 35.83962 * 12 11 10 15 15 N 1.30629 * 119.99781 * 8.97899 * 14 12 11 16 16 Si 1.86791 * 120.00051 * 188.97519 * 14 12 11 17 17 H 1.48508 * 109.47238 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47193 * 120.00265 * 16 14 12 19 19 H 1.48504 * 109.47343 * 240.00371 * 16 14 12 20 20 C 1.34778 * 119.99724 * 179.97438 * 2 1 3 21 21 O 1.21504 * 120.00135 * 0.02562 * 20 2 1 22 22 O 1.34643 * 119.99521 * 180.02562 * 20 2 1 23 23 C 1.45202 * 116.99359 * 180.02562 * 22 20 2 24 24 C 1.53000 * 109.47375 * 59.99987 * 23 22 20 25 25 C 1.53007 * 109.47021 * 180.02562 * 23 22 20 26 26 C 1.53006 * 109.47199 * 299.99750 * 23 22 20 27 27 H 1.09002 * 109.46801 * 90.00193 * 1 2 3 28 28 H 1.08997 * 109.47705 * 210.00229 * 1 2 3 29 29 H 1.09005 * 109.46748 * 330.00590 * 1 2 3 30 30 H 0.97003 * 120.00200 * 254.99811 * 3 2 1 31 31 H 1.07997 * 119.95943 * 359.97438 * 7 6 4 32 32 H 1.08001 * 119.66490 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.71517 * 180.02562 * 9 8 7 34 34 H 1.08004 * 120.05422 * 179.97438 * 10 9 8 35 35 H 0.97002 * 120.00237 * 180.02562 * 15 14 12 36 36 H 1.09006 * 109.46674 * 60.00038 * 24 23 22 37 37 H 1.09003 * 109.47183 * 179.97438 * 24 23 22 38 38 H 1.08991 * 109.47438 * 299.99785 * 24 23 22 39 39 H 1.09005 * 109.46743 * 59.99728 * 25 23 22 40 40 H 1.08996 * 109.47008 * 179.97438 * 25 23 22 41 41 H 1.08998 * 109.46704 * 300.00405 * 25 23 22 42 42 H 1.08999 * 109.46662 * 60.00444 * 26 23 22 43 43 H 1.08995 * 109.46894 * 180.02562 * 26 23 22 44 44 H 1.09001 * 109.46970 * 300.00697 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1655 1.2132 0.0000 4 6 2.2455 1.9453 1.1288 5 8 1.7054 1.5551 2.1461 6 6 2.9879 3.2191 1.1304 7 6 3.6889 3.6244 -0.0021 8 6 4.3841 4.8191 0.0039 9 6 4.3928 5.6278 1.1323 10 6 3.7093 5.2540 2.2665 11 6 2.9891 4.0454 2.2845 12 6 2.2812 3.6563 3.4389 13 1 2.2272 2.6131 3.7133 14 6 1.6464 4.6238 4.2318 15 7 1.5601 5.8579 3.8123 16 14 0.9244 4.1474 5.8874 17 1 1.1517 2.6998 6.1285 18 1 1.5811 4.9375 6.9596 19 1 -0.5343 4.4260 5.8900 20 6 2.1388 -1.1672 0.0005 21 8 1.5312 -2.2195 0.0005 22 8 3.4852 -1.1672 0.0010 23 6 4.1443 -2.4610 0.0010 24 6 3.7337 -3.2426 -1.2485 25 6 5.6612 -2.2606 0.0023 26 6 3.7327 -3.2431 1.2500 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 2.5964 1.5245 -0.8114 31 1 3.6904 3.0041 -0.8862 32 1 4.9259 5.1266 -0.8783 33 1 4.9408 6.5584 1.1197 34 1 3.7221 5.8893 3.1398 35 1 1.1214 6.5270 4.3607 36 1 4.0270 -2.6854 -2.1383 37 1 4.2288 -4.2137 -1.2488 38 1 2.6532 -3.3854 -1.2490 39 1 5.9534 -1.7039 0.8928 40 1 6.1560 -3.2318 0.0027 41 1 5.9547 -1.7032 -0.8872 42 1 2.6521 -3.3859 1.2495 43 1 4.2279 -4.2141 1.2501 44 1 4.0252 -2.6863 2.1402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868856428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:26 Heat of formation + Delta-G solvation = -57.364554 kcal Electronic energy + Delta-G solvation = -27794.849586 eV Core-core repulsion = 23906.871868 eV Total energy + Delta-G solvation = -3887.977718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.71916 -39.08931 -37.51712 -36.69384 -35.25374 -33.87991 -33.75236 -31.60975 -29.94268 -29.25846 -27.43302 -27.37900 -26.87581 -25.47079 -22.90834 -21.75300 -21.03977 -19.98341 -19.47237 -18.41469 -17.42637 -16.69719 -16.65150 -15.79158 -15.57474 -15.26800 -14.82332 -14.47002 -14.26593 -14.08561 -13.59066 -13.48903 -13.31611 -13.11031 -12.78508 -12.57015 -12.42248 -12.18403 -12.15509 -11.89833 -11.84083 -11.70010 -11.44617 -11.35236 -11.19564 -11.12804 -10.71973 -10.60712 -10.31660 -10.20147 -10.11015 -9.79318 -9.38152 -9.27486 -8.73837 -8.36745 -7.69291 -7.42974 -6.87873 -4.48473 1.91207 2.23702 2.73964 2.91747 3.07526 3.11055 3.16095 3.18309 3.93395 4.01489 4.60649 4.70236 4.75139 4.81120 4.90241 5.42561 5.48764 5.50617 5.52146 5.56140 5.63823 5.68214 5.78333 5.83914 5.89080 5.91562 5.96760 5.98036 6.20892 6.21961 6.28552 6.45473 6.49455 6.77342 6.85679 7.02444 7.12532 7.36094 7.51453 7.67185 7.76845 7.87703 8.08396 8.14204 8.41712 8.60535 8.73831 8.81226 9.30097 10.07830 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.004127 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.302286 B = 6782.958485 C = 7599.470496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.389 5.389 3 N -0.537 5.537 4 C 0.568 3.432 5 O -0.523 6.523 6 C -0.255 4.255 7 C -0.055 4.055 8 C -0.241 4.241 9 C -0.094 4.094 10 C -0.143 4.143 11 C 0.150 3.850 12 C -0.421 4.421 13 H 0.111 0.889 14 C 0.070 3.930 15 N -0.790 5.790 16 Si 0.915 3.085 17 H -0.256 1.256 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.661 3.339 21 O -0.569 6.569 22 O -0.351 6.351 23 C 0.133 3.867 24 C -0.182 4.182 25 C -0.140 4.140 26 C -0.183 4.183 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.409 0.591 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.283 0.717 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -9.854 -7.652 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.218 5.218 3 N -0.292 5.292 4 C 0.363 3.637 5 O -0.398 6.398 6 C -0.262 4.262 7 C -0.074 4.074 8 C -0.260 4.260 9 C -0.113 4.113 10 C -0.162 4.162 11 C 0.146 3.854 12 C -0.449 4.449 13 H 0.129 0.871 14 C -0.149 4.149 15 N -0.415 5.415 16 Si 0.740 3.260 17 H -0.180 1.180 18 H -0.198 1.198 19 H -0.199 1.199 20 C 0.416 3.584 21 O -0.457 6.457 22 O -0.265 6.265 23 C 0.096 3.904 24 C -0.239 4.239 25 C -0.198 4.198 26 C -0.241 4.241 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.251 0.749 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.710 -10.329 -6.829 12.676 hybrid contribution -0.177 0.176 0.158 0.295 sum 2.533 -10.154 -6.671 12.410 Atomic orbital electron populations 1.21870 0.74474 1.04679 1.01888 1.45656 1.03978 0.95624 1.76535 1.45509 1.56214 1.12624 1.14806 1.18890 0.79780 0.83819 0.81242 1.90688 1.46961 1.70666 1.31452 1.19174 1.12091 0.98329 0.96617 1.20650 0.96052 0.95514 0.95150 1.20300 1.09109 0.97813 0.98779 1.20825 0.98838 0.97680 0.93957 1.21335 0.98472 0.98622 0.97818 1.17440 0.88183 0.89528 0.90291 1.20364 1.24058 0.96471 1.04027 0.87148 1.26144 0.95200 0.94090 0.99444 1.69714 1.32305 1.02781 1.36697 0.86121 0.78858 0.80494 0.80576 1.17972 1.19777 1.19853 1.18077 0.81319 0.83227 0.75758 1.90883 1.69273 1.28581 1.56915 1.86412 1.18411 1.35436 1.86212 1.22073 0.92126 0.79818 0.96355 1.22513 1.04783 1.00087 0.96510 1.21846 0.91433 1.02791 1.03684 1.22510 1.04772 0.99990 0.96788 0.92320 0.89503 0.89719 0.74928 0.89135 0.88877 0.88916 0.86541 0.90646 0.92245 0.91286 0.89477 0.91231 0.90339 0.91475 0.89492 0.91335 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.67 10.52 59.84 0.63 2.29 16 2 N -0.39 -6.80 3.15 -72.13 -0.23 -7.03 16 3 N -0.54 -9.80 5.49 30.44 0.17 -9.63 16 4 C 0.57 12.83 7.72 -12.52 -0.10 12.73 16 5 O -0.52 -13.50 13.72 5.27 0.07 -13.42 16 6 C -0.26 -5.98 5.92 -104.37 -0.62 -6.59 16 7 C -0.05 -1.11 9.52 -39.22 -0.37 -1.48 16 8 C -0.24 -4.84 10.03 -39.37 -0.39 -5.24 16 9 C -0.09 -2.02 10.01 -39.59 -0.40 -2.42 16 10 C -0.14 -3.49 8.62 -38.88 -0.34 -3.82 16 11 C 0.15 3.87 5.48 -106.54 -0.58 3.29 16 12 C -0.42 -11.25 7.78 -37.81 -0.29 -11.54 16 13 H 0.11 3.10 5.73 -52.49 -0.30 2.80 16 14 C 0.07 1.75 5.25 -17.30 -0.09 1.66 16 15 N -0.79 -19.82 11.25 55.56 0.63 -19.20 16 16 Si 0.92 19.26 29.57 -169.99 -5.03 14.24 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 C 0.66 11.65 7.84 54.06 0.42 12.08 16 21 O -0.57 -10.16 11.46 -19.27 -0.22 -10.38 16 22 O -0.35 -5.86 9.50 -40.33 -0.38 -6.24 16 23 C 0.13 1.76 1.13 -90.61 -0.10 1.66 16 24 C -0.18 -2.11 8.37 37.16 0.31 -1.79 16 25 C -0.14 -1.49 8.85 37.16 0.33 -1.17 16 26 C -0.18 -2.42 8.37 37.16 0.31 -2.11 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.27 7.42 -51.93 -0.39 0.88 16 29 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 30 H 0.41 6.38 6.88 -182.60 -1.26 5.13 16 31 H 0.09 1.49 6.42 -52.49 -0.34 1.15 16 32 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.12 2.90 6.72 -52.48 -0.35 2.55 16 35 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.18 5.88 -51.93 -0.31 0.88 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -30.07 363.45 -7.82 -37.90 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.03 Total: 10.73 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.28 Total: -2.45 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.56 Total: -35.85 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.53 Total: -30.04 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.07 -7.82 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868856428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.469 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds