Wall clock time and date at job start Tue Mar 31 2020 12:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31004 * 120.00175 * 2 1 4 4 C 1.50700 * 119.99820 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47222 * 125.00607 * 4 3 2 6 6 H 1.09004 * 109.47101 * 54.99667 * 5 4 3 7 7 C 1.52994 * 109.47606 * 174.99713 * 5 4 3 8 8 O 1.42903 * 109.46991 * 54.99877 * 7 5 4 9 9 N 1.46500 * 109.47051 * 295.00087 * 5 4 3 10 10 C 1.34771 * 120.00405 * 154.99459 * 9 5 4 11 11 O 1.21588 * 120.00031 * 0.02562 * 10 9 5 12 12 N 1.34773 * 120.00236 * 179.97438 * 10 9 5 13 13 C 1.40032 * 120.00118 * 174.75236 * 12 10 9 14 14 C 1.38910 * 119.99861 * 326.14336 * 13 12 10 15 15 C 1.38011 * 120.00016 * 179.78840 * 14 13 12 16 16 C 1.38908 * 119.99711 * 0.47336 * 15 14 13 17 17 O 1.35781 * 119.99314 * 179.76391 * 16 15 14 18 18 C 1.34815 * 116.99563 * 185.93841 * 17 16 15 19 19 H 1.08001 * 120.00177 * 5.41183 * 18 17 16 20 20 C 1.38626 * 120.00221 * 185.41425 * 18 17 16 21 21 N 1.31579 * 119.99664 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00262 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47247 * 89.99872 * 22 20 18 24 24 H 1.48506 * 109.47286 * 210.00104 * 22 20 18 25 25 H 1.48505 * 109.47109 * 329.99906 * 22 20 18 26 26 C 1.38900 * 120.00061 * 359.78126 * 16 15 14 27 27 C 1.38003 * 120.00336 * 359.97438 * 26 16 15 28 28 H 1.09002 * 109.47160 * 59.99565 * 1 2 3 29 29 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47267 * 299.99696 * 1 2 3 31 31 H 1.07996 * 119.99850 * 180.02562 * 2 1 3 32 32 H 1.07996 * 119.99975 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47342 * 5.00437 * 4 3 2 34 34 H 1.09007 * 109.46713 * 245.00244 * 4 3 2 35 35 H 1.09004 * 109.46911 * 295.00202 * 7 5 4 36 36 H 1.08999 * 109.47659 * 174.99699 * 7 5 4 37 37 H 0.96701 * 114.00138 * 180.02562 * 8 7 5 38 38 H 0.97001 * 119.99675 * 334.99887 * 9 5 4 39 39 H 0.96993 * 120.00158 * 354.75435 * 12 10 9 40 40 H 1.08004 * 120.00167 * 0.02862 * 14 13 12 41 41 H 1.08004 * 120.00343 * 180.22916 * 15 14 13 42 42 H 0.96999 * 119.99747 * 179.97438 * 21 20 18 43 43 H 1.07997 * 119.99858 * 179.97438 * 26 16 15 44 44 H 1.08003 * 119.99947 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1344 0.0006 5 6 4.1795 1.9616 -1.1809 6 1 3.7449 2.9604 -1.1400 7 6 5.7043 2.0657 -1.1098 8 8 6.2687 0.7544 -1.0461 9 7 3.7924 1.3118 -2.4355 10 6 3.6660 2.0415 -3.5615 11 8 3.8736 3.2393 -3.5362 12 7 3.3103 1.4436 -4.7157 13 6 3.0718 2.2153 -5.8596 14 6 2.5140 3.4818 -5.7391 15 6 2.2829 4.2441 -6.8661 16 6 2.5992 3.7411 -8.1217 17 8 2.3675 4.4894 -9.2307 18 6 2.5809 3.8982 -10.4234 19 1 2.8361 2.8497 -10.4684 20 6 2.4728 4.6360 -11.5920 21 7 2.1624 5.9134 -11.5371 22 14 2.7693 3.8170 -13.2445 23 1 1.4891 3.2721 -13.7637 24 1 3.3070 4.8160 -14.2028 25 1 3.7475 2.7117 -13.0808 26 6 3.1522 2.4727 -8.2425 27 6 3.3878 1.7123 -7.1153 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0469 -0.9353 -0.0004 32 1 1.6221 2.0698 0.0004 33 1 4.0323 0.1107 -0.0887 34 1 4.0320 1.5689 0.9321 35 1 5.9890 2.6274 -0.2201 36 1 6.0754 2.5782 -1.9973 37 1 7.2345 0.7438 -0.9985 38 1 3.6270 0.3562 -2.4558 39 1 3.2195 0.4787 -4.7542 40 1 2.2646 3.8714 -4.7631 41 1 1.8526 5.2303 -6.7721 42 1 2.0871 6.4298 -12.3548 43 1 3.3977 2.0815 -9.2188 44 1 3.8174 0.7259 -7.2094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:51 Heat of formation + Delta-G solvation = -65.241750 kcal Electronic energy + Delta-G solvation = -25997.012854 eV Core-core repulsion = 22108.693556 eV Total energy + Delta-G solvation = -3888.319299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.39115 -38.89826 -37.88693 -36.43469 -36.02446 -34.22650 -33.87509 -32.15954 -31.06344 -30.15802 -28.43218 -27.43139 -25.28499 -24.72801 -22.52510 -22.01459 -20.83865 -20.50242 -19.78726 -18.52881 -17.85655 -17.52160 -17.28409 -16.55232 -15.80461 -15.42062 -14.82622 -14.64753 -14.52040 -14.24924 -14.15691 -13.99599 -13.73363 -13.52759 -13.46620 -13.18317 -12.83657 -12.70405 -12.50254 -12.32080 -11.86493 -11.76242 -11.52977 -11.48903 -11.36079 -11.18139 -11.03582 -10.63179 -10.43046 -10.29660 -9.92101 -9.61572 -9.26363 -9.19688 -9.06007 -8.65502 -8.14595 -6.84130 -6.40272 -3.98198 1.94995 2.21871 2.28865 2.77458 3.14551 3.15890 3.20781 3.39311 4.00243 4.03167 4.29167 4.39822 4.64279 4.69865 4.81796 5.02907 5.04813 5.14766 5.14986 5.23952 5.37009 5.38019 5.40743 5.51029 5.60853 5.64479 5.66980 5.81752 5.85709 6.19835 6.26506 6.32136 6.40219 6.45777 6.58308 6.77000 6.88041 6.98229 7.18730 7.27538 7.31615 7.33628 7.48432 7.85698 8.04267 8.13164 8.75259 9.05266 9.76927 10.77990 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.002312 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.433222 B =12106.008138 C =12599.865888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.093 4.093 5 C 0.174 3.826 6 H 0.102 0.898 7 C 0.060 3.940 8 O -0.571 6.571 9 N -0.733 5.733 10 C 0.700 3.300 11 O -0.580 6.580 12 N -0.676 5.676 13 C 0.059 3.941 14 C -0.068 4.068 15 C -0.177 4.177 16 C 0.144 3.856 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.218 4.218 27 C -0.094 4.094 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.377 0.623 38 H 0.396 0.604 39 H 0.397 0.603 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.269 0.731 43 H 0.131 0.869 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -13.326 22.628 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.181 4.181 3 C -0.176 4.176 4 C -0.130 4.130 5 C 0.068 3.932 6 H 0.119 0.881 7 C -0.019 4.019 8 O -0.376 6.376 9 N -0.388 5.388 10 C 0.401 3.599 11 O -0.457 6.457 12 N -0.323 5.323 13 C -0.034 4.034 14 C -0.088 4.088 15 C -0.196 4.196 16 C 0.091 3.909 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.238 4.238 27 C -0.115 4.115 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.224 0.776 38 H 0.229 0.771 39 H 0.231 0.769 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.079 0.921 43 H 0.148 0.852 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.599 -11.951 22.462 25.575 hybrid contribution 0.779 -1.213 -0.868 1.682 sum 3.377 -13.164 21.594 25.514 Atomic orbital electron populations 1.20845 0.93237 1.02213 1.02014 1.22838 0.96157 0.97837 1.01245 1.22797 0.95432 0.98393 1.00954 1.20887 0.92815 1.01840 0.97473 1.20824 0.91890 0.97972 0.82525 0.88055 1.22732 0.94366 0.84335 1.00500 1.86432 1.25279 1.28374 1.97501 1.45011 1.75105 1.11242 1.07481 1.15961 0.78065 0.85494 0.80380 1.90933 1.57062 1.12981 1.84758 1.42331 1.72126 1.09497 1.08306 1.17027 1.07782 0.94183 0.84385 1.20616 0.97045 0.93134 0.97988 1.20123 1.08533 1.01295 0.89697 1.19405 0.92830 0.90396 0.88294 1.84006 1.74680 1.37887 1.11644 1.21290 1.49600 0.95182 0.80574 0.89173 1.25278 0.96747 0.95545 0.99043 1.70052 1.44335 1.06544 1.28928 0.85725 0.78822 0.78596 0.80334 1.19931 1.20314 1.19259 1.20956 1.08143 0.96025 0.98628 1.20441 1.00613 0.99453 0.90971 0.91613 0.92213 0.91883 0.87587 0.87369 0.90149 0.89678 0.92907 0.92608 0.77602 0.77063 0.76914 0.85746 0.86199 0.92084 0.85166 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 10.17 36.00 0.37 -0.51 16 2 C -0.16 -1.20 9.87 -36.03 -0.36 -1.56 16 3 C -0.16 -1.23 8.88 -36.03 -0.32 -1.55 16 4 C -0.09 -0.67 4.92 -27.88 -0.14 -0.81 16 5 C 0.17 1.64 2.36 -67.93 -0.16 1.48 16 6 H 0.10 1.10 7.58 -51.93 -0.39 0.70 16 7 C 0.06 0.53 6.85 37.15 0.25 0.78 16 8 O -0.57 -4.60 12.83 -35.23 -0.45 -5.06 16 9 N -0.73 -7.78 4.74 -58.68 -0.28 -8.06 16 10 C 0.70 10.38 8.26 -86.93 -0.72 9.67 16 11 O -0.58 -10.91 13.72 5.29 0.07 -10.83 16 12 N -0.68 -9.72 5.35 -14.18 -0.08 -9.80 16 13 C 0.06 1.09 6.27 -83.61 -0.52 0.56 16 14 C -0.07 -1.37 8.65 -39.42 -0.34 -1.71 16 15 C -0.18 -3.98 9.99 -39.42 -0.39 -4.37 16 16 C 0.14 3.58 6.65 -39.09 -0.26 3.32 16 17 O -0.18 -5.18 9.76 -0.01 0.00 -5.18 16 18 C -0.39 -11.00 9.44 30.88 0.29 -10.70 16 19 H 0.09 2.34 5.29 -52.49 -0.28 2.06 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.65 13.67 55.48 0.76 -24.90 16 22 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 26 C -0.22 -4.77 9.12 -39.42 -0.36 -5.13 16 27 C -0.09 -1.74 9.96 -39.42 -0.39 -2.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.70 7.84 -52.49 -0.41 0.29 16 32 H 0.11 0.90 8.05 -52.49 -0.42 0.48 16 33 H 0.08 0.60 7.38 -51.93 -0.38 0.22 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.38 1.66 9.12 45.56 0.42 2.07 16 38 H 0.40 3.44 8.62 -40.82 -0.35 3.08 16 39 H 0.40 4.30 8.83 -40.82 -0.36 3.94 16 40 H 0.12 2.48 6.45 -52.48 -0.34 2.14 16 41 H 0.12 2.62 8.06 -52.48 -0.42 2.19 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 44 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -34.53 375.95 -7.82 -42.35 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.34 Total: 11.88 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.15 Total: -11.72 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.40 Total: -42.75 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.38 Total: -21.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.53 -7.82 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.889 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds