Wall clock time and date at job start Tue Mar 31 2020 12:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.31004 * 120.00175 * 2 1 4 4 C 1.50700 * 119.99820 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47222 * 125.00607 * 4 3 2 6 6 H 1.09004 * 109.47101 * 54.99667 * 5 4 3 7 7 C 1.52994 * 109.47606 * 174.99713 * 5 4 3 8 8 O 1.42903 * 109.46991 * 54.99877 * 7 5 4 9 9 N 1.46500 * 109.47051 * 295.00087 * 5 4 3 10 10 C 1.34771 * 120.00405 * 154.99459 * 9 5 4 11 11 O 1.21588 * 120.00031 * 0.02562 * 10 9 5 12 12 N 1.34773 * 120.00236 * 179.97438 * 10 9 5 13 13 C 1.40032 * 120.00118 * 174.75236 * 12 10 9 14 14 C 1.38910 * 119.99861 * 326.14336 * 13 12 10 15 15 C 1.38011 * 120.00016 * 179.78840 * 14 13 12 16 16 C 1.38908 * 119.99711 * 0.47336 * 15 14 13 17 17 O 1.35781 * 119.99314 * 179.76391 * 16 15 14 18 18 C 1.34815 * 116.99563 * 185.93841 * 17 16 15 19 19 H 1.08001 * 120.00177 * 5.41183 * 18 17 16 20 20 C 1.38626 * 120.00221 * 185.41425 * 18 17 16 21 21 N 1.31579 * 119.99664 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00262 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47247 * 89.99872 * 22 20 18 24 24 H 1.48506 * 109.47286 * 210.00104 * 22 20 18 25 25 H 1.48505 * 109.47109 * 329.99906 * 22 20 18 26 26 C 1.38900 * 120.00061 * 359.78126 * 16 15 14 27 27 C 1.38003 * 120.00336 * 359.97438 * 26 16 15 28 28 H 1.09002 * 109.47160 * 59.99565 * 1 2 3 29 29 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47267 * 299.99696 * 1 2 3 31 31 H 1.07996 * 119.99850 * 180.02562 * 2 1 3 32 32 H 1.07996 * 119.99975 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47342 * 5.00437 * 4 3 2 34 34 H 1.09007 * 109.46713 * 245.00244 * 4 3 2 35 35 H 1.09004 * 109.46911 * 295.00202 * 7 5 4 36 36 H 1.08999 * 109.47659 * 174.99699 * 7 5 4 37 37 H 0.96701 * 114.00138 * 180.02562 * 8 7 5 38 38 H 0.97001 * 119.99675 * 334.99887 * 9 5 4 39 39 H 0.96993 * 120.00158 * 354.75435 * 12 10 9 40 40 H 1.08004 * 120.00167 * 0.02862 * 14 13 12 41 41 H 1.08004 * 120.00343 * 180.22916 * 15 14 13 42 42 H 0.96999 * 119.99747 * 179.97438 * 21 20 18 43 43 H 1.07997 * 119.99858 * 179.97438 * 26 16 15 44 44 H 1.08003 * 119.99947 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1344 0.0006 5 6 4.1795 1.9616 -1.1809 6 1 3.7449 2.9604 -1.1400 7 6 5.7043 2.0657 -1.1098 8 8 6.2687 0.7544 -1.0461 9 7 3.7924 1.3118 -2.4355 10 6 3.6660 2.0415 -3.5615 11 8 3.8736 3.2393 -3.5362 12 7 3.3103 1.4436 -4.7157 13 6 3.0718 2.2153 -5.8596 14 6 2.5140 3.4818 -5.7391 15 6 2.2829 4.2441 -6.8661 16 6 2.5992 3.7411 -8.1217 17 8 2.3675 4.4894 -9.2307 18 6 2.5809 3.8982 -10.4234 19 1 2.8361 2.8497 -10.4684 20 6 2.4728 4.6360 -11.5920 21 7 2.1624 5.9134 -11.5371 22 14 2.7693 3.8170 -13.2445 23 1 1.4891 3.2721 -13.7637 24 1 3.3070 4.8160 -14.2028 25 1 3.7475 2.7117 -13.0808 26 6 3.1522 2.4727 -8.2425 27 6 3.3878 1.7123 -7.1153 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0469 -0.9353 -0.0004 32 1 1.6221 2.0698 0.0004 33 1 4.0323 0.1107 -0.0887 34 1 4.0320 1.5689 0.9321 35 1 5.9890 2.6274 -0.2201 36 1 6.0754 2.5782 -1.9973 37 1 7.2345 0.7438 -0.9985 38 1 3.6270 0.3562 -2.4558 39 1 3.2195 0.4787 -4.7542 40 1 2.2646 3.8714 -4.7631 41 1 1.8526 5.2303 -6.7721 42 1 2.0871 6.4298 -12.3548 43 1 3.3977 2.0815 -9.2188 44 1 3.8174 0.7259 -7.2094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116631808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:50 Heat of formation + Delta-G solvation = -91.153580 kcal Electronic energy + Delta-G solvation = -25998.136476 eV Core-core repulsion = 22108.693556 eV Total energy + Delta-G solvation = -3889.442920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.66197 -40.53370 -38.96844 -37.91279 -36.67304 -35.39092 -35.05849 -34.12559 -31.94658 -31.84839 -29.44549 -28.69512 -27.25820 -25.36014 -24.02707 -23.50390 -22.09730 -21.58840 -20.46802 -19.98865 -19.34038 -18.95701 -18.26793 -18.05624 -16.87059 -16.50557 -16.32956 -16.11432 -15.70493 -15.50881 -15.38105 -15.06860 -14.91825 -14.81835 -14.52270 -14.28214 -14.17921 -13.91803 -13.56098 -13.50131 -13.27232 -13.17912 -12.96646 -12.72707 -12.43302 -12.35244 -12.10858 -11.99900 -11.81328 -11.39269 -11.32644 -10.98692 -10.88109 -10.55277 -10.08422 -9.82791 -9.77891 -8.54186 -8.43740 -6.10802 0.54194 0.60517 1.36178 1.37641 1.46733 1.55466 1.65496 2.13165 2.20555 2.86276 3.19172 3.24327 3.42494 3.53577 3.75225 4.02825 4.07540 4.15274 4.22566 4.35092 4.44586 4.51558 4.54324 4.60491 4.65361 4.72286 4.77856 4.82034 4.86818 5.06301 5.06919 5.09620 5.20115 5.24632 5.32955 5.45115 5.52753 5.61409 5.71372 5.85174 5.98469 6.03394 6.06465 6.21543 6.87182 7.00636 7.06901 7.57286 7.82280 8.79907 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.002312 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.433222 B =12106.008138 C =12599.865888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.160 4.160 3 C -0.169 4.169 4 C -0.079 4.079 5 C 0.168 3.832 6 H 0.084 0.916 7 C 0.067 3.933 8 O -0.577 6.577 9 N -0.712 5.712 10 C 0.698 3.302 11 O -0.621 6.621 12 N -0.665 5.665 13 C 0.087 3.913 14 C -0.073 4.073 15 C -0.187 4.187 16 C 0.105 3.895 17 O -0.233 6.233 18 C -0.411 4.411 19 H 0.106 0.894 20 C -0.026 4.026 21 N -0.924 5.924 22 Si 1.020 2.980 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.250 1.250 26 C -0.217 4.217 27 C -0.084 4.084 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.394 0.606 38 H 0.409 0.591 39 H 0.420 0.580 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.272 0.728 43 H 0.132 0.868 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -17.105 24.233 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.178 4.178 3 C -0.188 4.188 4 C -0.116 4.116 5 C 0.063 3.937 6 H 0.103 0.897 7 C -0.013 4.013 8 O -0.385 6.385 9 N -0.367 5.367 10 C 0.399 3.601 11 O -0.501 6.501 12 N -0.314 5.314 13 C -0.008 4.008 14 C -0.093 4.093 15 C -0.207 4.207 16 C 0.055 3.945 17 O -0.139 6.139 18 C -0.487 4.487 19 H 0.123 0.877 20 C -0.223 4.223 21 N -0.562 5.562 22 Si 0.840 3.160 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.173 1.173 26 C -0.237 4.237 27 C -0.104 4.104 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.244 0.756 38 H 0.246 0.754 39 H 0.258 0.742 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.775 -15.830 24.166 29.135 hybrid contribution 0.456 -0.180 -0.953 1.072 sum 4.231 -16.010 23.213 28.514 Atomic orbital electron populations 1.20877 0.93171 1.02792 1.01737 1.22998 0.96375 0.98143 1.00279 1.22813 0.95808 0.98229 1.01911 1.20790 0.92265 1.01674 0.96875 1.20981 0.92605 0.97618 0.82540 0.89750 1.22566 0.93642 0.84798 1.00255 1.86381 1.27008 1.27633 1.97441 1.44892 1.73544 1.11702 1.06584 1.16124 0.77767 0.85117 0.81101 1.90924 1.58767 1.15052 1.85395 1.42149 1.71826 1.10364 1.07071 1.17121 1.04419 0.93345 0.85907 1.20701 0.97352 0.94079 0.97182 1.20234 1.08894 1.01549 0.90019 1.19839 0.94901 0.91831 0.87948 1.83969 1.77434 1.39759 1.12765 1.21852 1.49726 0.96142 0.80972 0.87697 1.26632 0.96176 0.96174 1.03351 1.70212 1.47121 1.08675 1.30204 0.84561 0.79366 0.77821 0.74292 1.18793 1.19913 1.17332 1.21106 1.07445 0.95119 1.00032 1.20780 0.99262 1.00835 0.89519 0.92518 0.91225 0.91577 0.86386 0.88375 0.89564 0.88208 0.90677 0.95443 0.75630 0.75444 0.74247 0.85415 0.87026 0.91939 0.85045 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 10.17 71.23 0.72 -0.82 16 2 C -0.16 -1.97 9.87 25.64 0.25 -1.71 16 3 C -0.17 -2.29 8.88 25.64 0.23 -2.07 16 4 C -0.08 -0.92 4.92 29.85 0.15 -0.78 16 5 C 0.17 2.82 2.36 44.99 0.11 2.93 16 6 H 0.08 1.75 7.58 -2.39 -0.02 1.74 16 7 C 0.07 1.03 6.85 71.98 0.49 1.53 16 8 O -0.58 -7.52 12.83 -148.98 -1.91 -9.43 16 9 N -0.71 -13.30 4.74 -457.83 -2.17 -15.47 16 10 C 0.70 19.24 8.26 179.06 1.48 20.72 16 11 O -0.62 -22.87 13.72 -3.99 -0.05 -22.92 16 12 N -0.66 -17.01 5.35 -317.05 -1.70 -18.71 16 13 C 0.09 2.99 6.27 38.15 0.24 3.23 16 14 C -0.07 -2.94 8.65 22.38 0.19 -2.75 16 15 C -0.19 -8.77 9.99 22.38 0.22 -8.54 16 16 C 0.11 5.42 6.65 22.59 0.15 5.57 16 17 O -0.23 -14.29 9.76 -22.94 -0.22 -14.51 16 18 C -0.41 -24.01 9.44 67.91 0.64 -23.37 16 19 H 0.11 5.52 5.29 -2.91 -0.02 5.50 16 20 C -0.03 -1.51 5.49 84.82 0.47 -1.04 16 21 N -0.92 -57.63 13.67 21.61 0.30 -57.34 16 22 Si 1.02 42.93 29.55 68.60 2.03 44.96 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 26 C -0.22 -9.41 9.12 22.37 0.20 -9.20 16 27 C -0.08 -2.85 9.96 22.37 0.22 -2.63 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 1.17 7.84 -2.91 -0.02 1.15 16 32 H 0.10 1.53 8.05 -2.91 -0.02 1.51 16 33 H 0.09 0.96 7.38 -2.39 -0.02 0.95 16 34 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.39 2.28 9.12 -74.06 -0.68 1.60 16 38 H 0.41 5.62 8.62 -92.71 -0.80 4.82 16 39 H 0.42 7.20 8.83 -92.71 -0.82 6.38 16 40 H 0.13 5.10 6.45 -2.91 -0.02 5.08 16 41 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.13 5.61 5.71 -2.91 -0.02 5.59 16 44 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -79.73 375.95 0.80 -78.94 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -1.24 Total: 33.44 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 5.77 Total: -18.95 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -3.57 Total: -91.52 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -2.19 Total: -46.86 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -79.73 0.80 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.218 kcal (2) G-P(sol) polarization free energy of solvation -79.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds