Wall clock time and date at job start Tue Mar 31 2020 12:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.30993 * 119.99920 * 2 1 4 4 C 1.50702 * 120.00082 * 359.72575 * 3 2 1 5 5 C 1.52999 * 109.47076 * 125.27737 * 4 3 2 6 6 H 1.09003 * 109.46879 * 305.00122 * 5 4 3 7 7 C 1.53002 * 109.47346 * 184.99952 * 5 4 3 8 8 O 1.42898 * 109.46929 * 305.00006 * 7 5 4 9 9 N 1.46496 * 109.47376 * 64.99665 * 5 4 3 10 10 C 1.34776 * 120.00202 * 204.99893 * 9 5 4 11 11 O 1.21589 * 119.99933 * 0.02562 * 10 9 5 12 12 N 1.34778 * 120.00096 * 180.02562 * 10 9 5 13 13 C 1.40027 * 119.99900 * 175.49586 * 12 10 9 14 14 C 1.38907 * 120.00174 * 214.84840 * 13 12 10 15 15 C 1.38006 * 120.00132 * 179.79104 * 14 13 12 16 16 C 1.38901 * 120.00104 * 0.46635 * 15 14 13 17 17 O 1.35786 * 119.99981 * 179.76636 * 16 15 14 18 18 C 1.34811 * 116.99902 * 185.35899 * 17 16 15 19 19 H 1.08004 * 119.99930 * 354.97071 * 18 17 16 20 20 C 1.38632 * 120.00132 * 174.96188 * 18 17 16 21 21 N 1.31573 * 119.99963 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99752 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47335 * 89.99581 * 22 20 18 24 24 H 1.48498 * 109.47245 * 209.99459 * 22 20 18 25 25 H 1.48497 * 109.47251 * 330.00092 * 22 20 18 26 26 C 1.38897 * 119.99941 * 359.78733 * 16 15 14 27 27 C 1.38013 * 120.00541 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.46935 * 59.99894 * 1 2 3 29 29 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46762 * 299.99605 * 1 2 3 31 31 H 1.08001 * 119.99705 * 179.97438 * 2 1 3 32 32 H 1.08004 * 119.99749 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47264 * 245.27162 * 4 3 2 34 34 H 1.08996 * 109.46964 * 5.27507 * 4 3 2 35 35 H 1.09003 * 109.47021 * 64.99699 * 7 5 4 36 36 H 1.08998 * 109.47217 * 184.99782 * 7 5 4 37 37 H 0.96693 * 114.00058 * 179.97438 * 8 7 5 38 38 H 0.97005 * 120.00132 * 25.00470 * 9 5 4 39 39 H 0.96994 * 119.99920 * 355.49035 * 12 10 9 40 40 H 1.08004 * 119.99985 * 0.02562 * 14 13 12 41 41 H 1.08005 * 120.00341 * 180.22975 * 15 14 13 42 42 H 0.97000 * 119.99513 * 180.02562 * 21 20 18 43 43 H 1.08000 * 119.99879 * 179.97438 * 26 16 15 44 44 H 1.07998 * 120.00096 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 1.4085 2.4396 -0.0062 5 6 1.8701 3.3006 1.1712 6 1 1.7580 2.7384 2.0983 7 6 1.0195 4.5705 1.2388 8 8 1.0741 5.2479 -0.0183 9 7 3.2773 3.6645 0.9880 10 6 4.0407 3.9640 2.0576 11 8 3.5616 3.9316 3.1747 12 7 5.3351 4.2993 1.8890 13 6 6.1031 4.7016 2.9886 14 6 7.0827 5.6742 2.8332 15 6 7.8366 6.0737 3.9178 16 6 7.6226 5.4965 5.1629 17 8 8.3676 5.8863 6.2291 18 6 8.1874 5.2105 7.3816 19 1 7.4191 4.4545 7.4498 20 6 8.9883 5.4858 8.4791 21 7 8.8126 4.8259 9.6038 22 14 10.3167 6.7937 8.3613 23 1 9.7523 8.1096 8.7556 24 1 11.4379 6.4438 9.2699 25 1 10.8159 6.8678 6.9647 26 6 6.6467 4.5203 5.3173 27 6 5.8892 4.1241 4.2337 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0470 -0.9353 0.0004 32 1 3.2420 1.1344 0.0004 33 1 1.6030 2.9669 -0.9401 34 1 0.3403 2.2428 0.0843 35 1 -0.0134 4.3045 1.4636 36 1 1.4046 5.2246 2.0210 37 1 0.5560 6.0637 -0.0483 38 1 3.6596 3.6901 0.0969 39 1 5.7347 4.2619 1.0060 40 1 7.2517 6.1203 1.8642 41 1 8.5957 6.8326 3.7978 42 1 9.3728 5.0188 10.3718 43 1 6.4805 4.0712 6.2853 44 1 5.1307 3.3647 4.3538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:54 Heat of formation + Delta-G solvation = -59.511887 kcal Electronic energy + Delta-G solvation = -26041.082004 eV Core-core repulsion = 22153.011171 eV Total energy + Delta-G solvation = -3888.070833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46194 -39.04623 -38.02011 -36.56957 -36.24652 -34.31723 -33.93689 -32.28044 -30.68433 -30.21285 -28.18265 -27.68734 -25.61421 -25.08968 -22.79179 -22.01502 -20.96390 -20.47228 -18.94666 -18.56003 -17.75912 -17.58496 -17.38393 -16.69955 -15.90505 -15.67440 -15.40849 -14.78765 -14.50816 -14.21926 -14.07136 -13.85951 -13.75887 -13.72056 -13.64497 -13.37465 -12.74078 -12.53507 -12.37563 -12.24542 -12.15007 -11.80046 -11.68781 -11.61230 -11.57255 -11.04396 -10.92168 -10.69749 -10.35583 -10.22757 -9.89333 -9.64433 -9.31366 -9.20340 -9.07301 -8.71357 -8.22557 -6.98944 -6.36545 -4.02236 1.93026 2.10790 2.20275 2.71313 3.24703 3.28140 3.33566 3.43043 4.02298 4.21991 4.27550 4.45121 4.56000 4.70313 4.78268 4.90208 4.92909 5.04038 5.11506 5.15343 5.17975 5.31527 5.38396 5.51152 5.60643 5.63197 5.69069 5.76897 5.82202 6.13006 6.16418 6.26290 6.36484 6.42485 6.55359 6.64597 6.71736 6.90085 7.16900 7.22431 7.31783 7.36958 7.65154 7.85228 8.07398 8.08327 8.69908 8.98692 9.61238 10.71252 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.002321 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.086533 B =12059.490611 C =12520.182065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.165 4.165 3 C -0.159 4.159 4 C -0.098 4.098 5 C 0.175 3.825 6 H 0.101 0.899 7 C 0.060 3.940 8 O -0.570 6.570 9 N -0.734 5.734 10 C 0.700 3.300 11 O -0.577 6.577 12 N -0.676 5.676 13 C 0.064 3.936 14 C -0.099 4.099 15 C -0.177 4.177 16 C 0.149 3.851 17 O -0.218 6.218 18 C -0.387 4.387 19 H 0.107 0.893 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.206 4.206 27 C -0.067 4.067 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.378 0.622 38 H 0.396 0.604 39 H 0.398 0.602 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.279 0.721 43 H 0.136 0.864 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.143 -4.148 -22.809 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.183 4.183 3 C -0.177 4.177 4 C -0.136 4.136 5 C 0.069 3.931 6 H 0.119 0.881 7 C -0.019 4.019 8 O -0.376 6.376 9 N -0.390 5.390 10 C 0.401 3.599 11 O -0.454 6.454 12 N -0.323 5.323 13 C -0.029 4.029 14 C -0.120 4.120 15 C -0.197 4.197 16 C 0.097 3.903 17 O -0.124 6.124 18 C -0.463 4.463 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.732 3.268 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.226 4.226 27 C -0.087 4.087 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.224 0.776 38 H 0.230 0.770 39 H 0.232 0.768 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.153 0.847 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.997 -4.552 -21.663 26.738 hybrid contribution 0.552 0.884 -0.489 1.151 sum -14.446 -3.668 -22.153 26.700 Atomic orbital electron populations 1.20879 0.93439 1.02164 1.01875 1.22814 0.96238 0.97929 1.01334 1.22790 0.99760 0.94062 1.01051 1.20978 1.00275 0.93511 0.98799 1.20840 0.79278 0.93107 0.99883 0.88069 1.22723 0.98640 0.94581 0.85968 1.86424 1.74923 1.41715 1.34494 1.45053 1.10777 1.74902 1.08268 1.15982 0.80919 0.78271 0.84772 1.90934 1.72949 1.58832 1.22711 1.42305 1.08974 1.70634 1.10436 1.17101 0.97759 1.00634 0.87385 1.20321 0.97271 0.96276 0.98082 1.19958 1.04381 1.05131 0.90237 1.19140 0.90822 0.92810 0.87505 1.83563 1.56963 1.54219 1.17621 1.20776 1.19907 1.19825 0.85782 0.87603 1.24466 0.97871 0.97848 0.93926 1.69661 1.39880 1.40377 1.01987 0.86172 0.80586 0.81075 0.78997 1.19941 1.20892 1.18364 1.21232 0.99151 1.02160 1.00021 1.20946 0.98034 0.98590 0.91110 0.91703 0.92278 0.91531 0.87431 0.87324 0.89640 0.89655 0.92938 0.92577 0.77584 0.77013 0.76823 0.86671 0.86135 0.91122 0.84654 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 8.65 36.01 0.31 -0.46 16 2 C -0.17 -1.23 10.26 -36.02 -0.37 -1.60 16 3 C -0.16 -1.24 9.25 -36.02 -0.33 -1.58 16 4 C -0.10 -0.71 4.72 -27.88 -0.13 -0.85 16 5 C 0.17 1.64 2.36 -67.93 -0.16 1.48 16 6 H 0.10 1.14 7.58 -51.93 -0.39 0.74 16 7 C 0.06 0.53 6.85 37.16 0.25 0.79 16 8 O -0.57 -4.54 12.83 -35.23 -0.45 -4.99 16 9 N -0.73 -7.48 4.72 -58.68 -0.28 -7.76 16 10 C 0.70 10.10 8.37 -86.92 -0.73 9.37 16 11 O -0.58 -10.77 13.44 5.29 0.07 -10.70 16 12 N -0.68 -9.22 5.35 -14.18 -0.08 -9.30 16 13 C 0.06 1.13 6.30 -83.62 -0.53 0.60 16 14 C -0.10 -1.67 9.96 -39.42 -0.39 -2.06 16 15 C -0.18 -3.50 9.98 -39.42 -0.39 -3.90 16 16 C 0.15 3.52 6.65 -39.09 -0.26 3.26 16 17 O -0.22 -5.85 8.58 -0.01 0.00 -5.85 16 18 C -0.39 -11.12 9.94 30.88 0.31 -10.82 16 19 H 0.11 3.13 5.43 -52.48 -0.28 2.84 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -25.88 13.96 55.48 0.77 -25.10 16 22 Si 0.91 21.93 28.62 -169.99 -4.86 17.07 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -6.27 7.11 56.52 0.40 -5.86 16 26 C -0.21 -4.71 9.16 -39.42 -0.36 -5.07 16 27 C -0.07 -1.36 8.69 -39.41 -0.34 -1.70 16 28 H 0.06 0.35 7.84 -51.93 -0.41 -0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.11 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.11 0.88 8.03 -52.48 -0.42 0.46 16 33 H 0.09 0.63 7.73 -51.93 -0.40 0.23 16 34 H 0.09 0.55 5.80 -51.93 -0.30 0.25 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.38 1.63 9.12 45.56 0.42 2.05 16 38 H 0.40 3.11 8.62 -40.82 -0.35 2.76 16 39 H 0.40 3.90 8.84 -40.82 -0.36 3.54 16 40 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 42 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.14 3.26 5.63 -52.49 -0.30 2.97 16 44 H 0.13 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -33.84 370.87 -7.65 -41.50 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.20 Total: 10.39 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.22 Total: -10.86 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.42 Total: -42.16 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.38 Total: -21.54 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.84 -7.65 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.013 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds