Wall clock time and date at job start Tue Mar 31 2020 12:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.30993 * 119.99920 * 2 1 4 4 C 1.50702 * 120.00082 * 359.72575 * 3 2 1 5 5 C 1.52999 * 109.47076 * 125.27737 * 4 3 2 6 6 H 1.09003 * 109.46879 * 305.00122 * 5 4 3 7 7 C 1.53002 * 109.47346 * 184.99952 * 5 4 3 8 8 O 1.42898 * 109.46929 * 305.00006 * 7 5 4 9 9 N 1.46496 * 109.47376 * 64.99665 * 5 4 3 10 10 C 1.34776 * 120.00202 * 204.99893 * 9 5 4 11 11 O 1.21589 * 119.99933 * 0.02562 * 10 9 5 12 12 N 1.34778 * 120.00096 * 180.02562 * 10 9 5 13 13 C 1.40027 * 119.99900 * 175.49586 * 12 10 9 14 14 C 1.38907 * 120.00174 * 214.84840 * 13 12 10 15 15 C 1.38006 * 120.00132 * 179.79104 * 14 13 12 16 16 C 1.38901 * 120.00104 * 0.46635 * 15 14 13 17 17 O 1.35786 * 119.99981 * 179.76636 * 16 15 14 18 18 C 1.34811 * 116.99902 * 185.35899 * 17 16 15 19 19 H 1.08004 * 119.99930 * 354.97071 * 18 17 16 20 20 C 1.38632 * 120.00132 * 174.96188 * 18 17 16 21 21 N 1.31573 * 119.99963 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99752 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47335 * 89.99581 * 22 20 18 24 24 H 1.48498 * 109.47245 * 209.99459 * 22 20 18 25 25 H 1.48497 * 109.47251 * 330.00092 * 22 20 18 26 26 C 1.38897 * 119.99941 * 359.78733 * 16 15 14 27 27 C 1.38013 * 120.00541 * 359.97438 * 26 16 15 28 28 H 1.08994 * 109.46935 * 59.99894 * 1 2 3 29 29 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46762 * 299.99605 * 1 2 3 31 31 H 1.08001 * 119.99705 * 179.97438 * 2 1 3 32 32 H 1.08004 * 119.99749 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47264 * 245.27162 * 4 3 2 34 34 H 1.08996 * 109.46964 * 5.27507 * 4 3 2 35 35 H 1.09003 * 109.47021 * 64.99699 * 7 5 4 36 36 H 1.08998 * 109.47217 * 184.99782 * 7 5 4 37 37 H 0.96693 * 114.00058 * 179.97438 * 8 7 5 38 38 H 0.97005 * 120.00132 * 25.00470 * 9 5 4 39 39 H 0.96994 * 119.99920 * 355.49035 * 12 10 9 40 40 H 1.08004 * 119.99985 * 0.02562 * 14 13 12 41 41 H 1.08005 * 120.00341 * 180.22975 * 15 14 13 42 42 H 0.97000 * 119.99513 * 180.02562 * 21 20 18 43 43 H 1.08000 * 119.99879 * 179.97438 * 26 16 15 44 44 H 1.07998 * 120.00096 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 1.4085 2.4396 -0.0062 5 6 1.8701 3.3006 1.1712 6 1 1.7580 2.7384 2.0983 7 6 1.0195 4.5705 1.2388 8 8 1.0741 5.2479 -0.0183 9 7 3.2773 3.6645 0.9880 10 6 4.0407 3.9640 2.0576 11 8 3.5616 3.9316 3.1747 12 7 5.3351 4.2993 1.8890 13 6 6.1031 4.7016 2.9886 14 6 7.0827 5.6742 2.8332 15 6 7.8366 6.0737 3.9178 16 6 7.6226 5.4965 5.1629 17 8 8.3676 5.8863 6.2291 18 6 8.1874 5.2105 7.3816 19 1 7.4191 4.4545 7.4498 20 6 8.9883 5.4858 8.4791 21 7 8.8126 4.8259 9.6038 22 14 10.3167 6.7937 8.3613 23 1 9.7523 8.1096 8.7556 24 1 11.4379 6.4438 9.2699 25 1 10.8159 6.8678 6.9647 26 6 6.6467 4.5203 5.3173 27 6 5.8892 4.1241 4.2337 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0470 -0.9353 0.0004 32 1 3.2420 1.1344 0.0004 33 1 1.6030 2.9669 -0.9401 34 1 0.3403 2.2428 0.0843 35 1 -0.0134 4.3045 1.4636 36 1 1.4046 5.2246 2.0210 37 1 0.5560 6.0637 -0.0483 38 1 3.6596 3.6901 0.0969 39 1 5.7347 4.2619 1.0060 40 1 7.2517 6.1203 1.8642 41 1 8.5957 6.8326 3.7978 42 1 9.3728 5.0188 10.3718 43 1 6.4805 4.0712 6.2853 44 1 5.1307 3.3647 4.3538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116631809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:53 Heat of formation + Delta-G solvation = -85.034163 kcal Electronic energy + Delta-G solvation = -26042.188733 eV Core-core repulsion = 22153.011171 eV Total energy + Delta-G solvation = -3889.177562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70751 -40.64522 -39.07629 -38.01330 -36.85365 -35.42718 -35.15658 -34.34308 -31.87946 -31.56095 -29.42293 -28.58085 -27.07789 -26.20712 -24.22510 -23.45942 -22.15455 -21.65113 -20.15873 -19.60919 -19.30759 -18.99097 -18.39657 -18.04658 -16.80830 -16.60469 -16.53324 -16.23756 -15.80685 -15.64764 -15.47223 -15.41628 -15.13407 -14.79370 -14.43004 -14.24569 -14.19251 -14.07216 -13.89641 -13.46442 -13.28559 -13.11300 -12.73610 -12.67874 -12.46694 -12.41912 -12.30558 -12.01345 -11.64106 -11.50481 -11.31499 -11.03858 -10.91191 -10.62831 -10.12596 -9.84273 -9.79356 -8.62289 -8.48219 -6.20414 0.51133 0.56321 1.33200 1.33724 1.38319 1.54190 1.62614 2.10712 2.30119 2.78840 3.04537 3.18231 3.24045 3.40809 3.79370 4.01304 4.09984 4.12176 4.18534 4.34981 4.40506 4.48350 4.50024 4.56514 4.63503 4.68732 4.76479 4.80971 4.86520 5.06038 5.10380 5.15383 5.21034 5.24398 5.38080 5.51094 5.52608 5.64434 5.76472 5.79145 5.93205 5.95710 6.05528 6.23582 6.85502 6.86441 7.06474 7.55569 7.59153 8.63761 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.002321 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.086533 B =12059.490611 C =12520.182065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.169 4.169 3 C -0.171 4.171 4 C -0.083 4.083 5 C 0.170 3.830 6 H 0.080 0.920 7 C 0.067 3.933 8 O -0.575 6.575 9 N -0.712 5.712 10 C 0.697 3.303 11 O -0.622 6.622 12 N -0.663 5.663 13 C 0.091 3.909 14 C -0.081 4.081 15 C -0.166 4.166 16 C 0.110 3.890 17 O -0.241 6.241 18 C -0.399 4.399 19 H 0.075 0.925 20 C 0.006 3.994 21 N -0.927 5.927 22 Si 0.976 3.024 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.257 1.257 26 C -0.222 4.222 27 C -0.081 4.081 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.395 0.605 38 H 0.412 0.588 39 H 0.423 0.577 40 H 0.172 0.828 41 H 0.145 0.855 42 H 0.284 0.716 43 H 0.104 0.896 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -2.879 -27.063 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.187 4.187 3 C -0.189 4.189 4 C -0.121 4.121 5 C 0.065 3.935 6 H 0.098 0.902 7 C -0.012 4.012 8 O -0.383 6.383 9 N -0.368 5.368 10 C 0.397 3.603 11 O -0.502 6.502 12 N -0.313 5.313 13 C -0.003 4.003 14 C -0.101 4.101 15 C -0.185 4.185 16 C 0.060 3.940 17 O -0.148 6.148 18 C -0.476 4.476 19 H 0.092 0.908 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.798 3.202 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.181 1.181 26 C -0.242 4.242 27 C -0.102 4.102 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.244 0.756 38 H 0.249 0.751 39 H 0.261 0.739 40 H 0.189 0.811 41 H 0.162 0.838 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.287 -3.295 -26.040 30.375 hybrid contribution 0.358 0.363 0.502 0.715 sum -14.929 -2.932 -25.538 29.727 Atomic orbital electron populations 1.20916 0.92392 1.02822 1.02341 1.23020 0.97209 0.97919 1.00515 1.22835 0.99678 0.94512 1.01918 1.20876 1.00763 0.92649 0.97787 1.20948 0.78729 0.93806 1.00052 0.90241 1.22543 0.99426 0.93634 0.85613 1.86373 1.75588 1.42791 1.33536 1.44902 1.10828 1.73176 1.07916 1.16176 0.81181 0.78003 0.84931 1.90928 1.73818 1.60592 1.24895 1.42108 1.08597 1.70137 1.10459 1.17213 0.96928 0.98958 0.87232 1.20810 0.95113 0.94714 0.99470 1.20379 1.04592 1.04537 0.89009 1.19667 0.91464 0.94399 0.88423 1.83501 1.58670 1.55062 1.17604 1.20677 1.19679 1.19827 0.87374 0.90753 1.25358 1.00251 1.00238 0.93332 1.69757 1.41598 1.42501 1.02907 0.85137 0.77763 0.78157 0.79150 1.19097 1.19309 1.18125 1.21110 1.00411 1.02961 0.99692 1.20915 0.97936 0.99251 0.92079 0.90695 0.91671 0.91460 0.87388 0.87814 0.88968 0.88431 0.90840 0.95481 0.75596 0.75139 0.73907 0.81091 0.83752 0.90595 0.87812 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.65 71.24 0.62 -0.69 16 2 C -0.17 -2.25 10.26 25.66 0.26 -1.99 16 3 C -0.17 -2.39 9.25 25.65 0.24 -2.15 16 4 C -0.08 -1.01 4.72 29.85 0.14 -0.87 16 5 C 0.17 2.94 2.36 44.99 0.11 3.04 16 6 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16 7 C 0.07 1.07 6.85 71.98 0.49 1.56 16 8 O -0.58 -7.46 12.83 -148.98 -1.91 -9.37 16 9 N -0.71 -12.96 4.72 -457.81 -2.16 -15.12 16 10 C 0.70 18.96 8.37 179.05 1.50 20.46 16 11 O -0.62 -23.32 13.44 -4.00 -0.05 -23.37 16 12 N -0.66 -16.02 5.35 -317.04 -1.69 -17.71 16 13 C 0.09 3.00 6.30 38.15 0.24 3.24 16 14 C -0.08 -2.39 9.96 22.38 0.22 -2.16 16 15 C -0.17 -6.16 9.98 22.37 0.22 -5.93 16 16 C 0.11 5.29 6.65 22.59 0.15 5.44 16 17 O -0.24 -13.34 8.58 -22.94 -0.20 -13.54 16 18 C -0.40 -24.37 9.94 67.91 0.68 -23.69 16 19 H 0.07 4.85 5.43 -2.91 -0.02 4.83 16 20 C 0.01 0.36 5.49 84.83 0.47 0.82 16 21 N -0.93 -57.03 13.96 21.61 0.30 -56.73 16 22 Si 0.98 46.10 28.62 68.60 1.96 48.06 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 26 C -0.22 -10.76 9.16 22.37 0.20 -10.55 16 27 C -0.08 -3.39 8.69 22.38 0.19 -3.19 16 28 H 0.07 0.62 7.84 -2.39 -0.02 0.60 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 31 H 0.11 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.10 1.52 8.03 -2.91 -0.02 1.49 16 33 H 0.09 1.04 7.73 -2.39 -0.02 1.02 16 34 H 0.10 0.99 5.80 -2.39 -0.01 0.97 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.39 2.25 9.12 -74.06 -0.68 1.58 16 38 H 0.41 5.07 8.62 -92.70 -0.80 4.27 16 39 H 0.42 6.28 8.84 -92.71 -0.82 5.46 16 40 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 43 H 0.10 5.60 5.63 -2.91 -0.02 5.58 16 44 H 0.12 5.20 6.22 -2.91 -0.02 5.18 16 Total: -1.00 -78.97 370.87 0.75 -78.23 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -1.23 Total: 26.22 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 5.73 Total: -16.66 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -3.56 Total: -89.56 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.16 Total: -46.28 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.96 Total: 48.06 kcal Total: -78.97 0.75 -78.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.807 kcal (2) G-P(sol) polarization free energy of solvation -78.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds