Wall clock time and date at job start Tue Mar 31 2020 12:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.31001 * 119.99823 * 2 1 4 4 C 1.50698 * 119.99966 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47307 * 125.00001 * 4 3 2 6 6 H 1.08996 * 109.47152 * 54.99738 * 5 4 3 7 7 C 1.52996 * 109.47428 * 175.00230 * 5 4 3 8 8 O 1.42897 * 109.47491 * 54.99594 * 7 5 4 9 9 N 1.46503 * 109.46794 * 294.99685 * 5 4 3 10 10 C 1.34777 * 119.99928 * 154.99937 * 9 5 4 11 11 O 1.21592 * 120.00011 * 359.97438 * 10 9 5 12 12 N 1.34780 * 120.00205 * 180.02562 * 10 9 5 13 13 C 1.40026 * 120.00035 * 174.73450 * 12 10 9 14 14 C 1.38919 * 119.99951 * 146.34273 * 13 12 10 15 15 C 1.38007 * 119.99585 * 179.97438 * 14 13 12 16 16 C 1.38901 * 120.00380 * 0.02562 * 15 14 13 17 17 O 1.35785 * 119.99793 * 179.97438 * 16 15 14 18 18 C 1.34806 * 117.00196 * 5.91112 * 17 16 15 19 19 H 1.08005 * 119.99819 * 5.40940 * 18 17 16 20 20 C 1.38627 * 120.00152 * 185.40759 * 18 17 16 21 21 N 1.31569 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47144 * 90.00062 * 22 20 18 24 24 H 1.48497 * 109.47363 * 210.00070 * 22 20 18 25 25 H 1.48499 * 109.47399 * 330.00142 * 22 20 18 26 26 C 1.38903 * 119.99915 * 0.25206 * 16 15 14 27 27 C 1.38002 * 120.00300 * 359.49166 * 26 16 15 28 28 H 1.08997 * 109.47312 * 60.00031 * 1 2 3 29 29 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46905 * 299.99593 * 1 2 3 31 31 H 1.07997 * 120.00236 * 180.02562 * 2 1 3 32 32 H 1.08002 * 119.99946 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47219 * 4.99412 * 4 3 2 34 34 H 1.09000 * 109.47259 * 245.00056 * 4 3 2 35 35 H 1.08997 * 109.47680 * 174.99947 * 7 5 4 36 36 H 1.09002 * 109.46833 * 294.99664 * 7 5 4 37 37 H 0.96697 * 114.00613 * 180.02562 * 8 7 5 38 38 H 0.96996 * 120.00615 * 335.00408 * 9 5 4 39 39 H 0.96996 * 119.99822 * 354.72962 * 12 10 9 40 40 H 1.08001 * 119.99542 * 0.02562 * 14 13 12 41 41 H 1.08007 * 119.99401 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00671 * 179.97438 * 21 20 18 43 43 H 1.08003 * 119.99698 * 179.72081 * 26 16 15 44 44 H 1.08005 * 120.00288 * 180.24814 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 6 1.8704 3.2947 1.1822 6 1 2.9526 3.4177 1.1405 7 6 1.1980 4.6672 1.1122 8 8 -0.2198 4.5005 1.0494 9 7 1.5019 2.6339 2.4367 10 6 2.1978 2.8888 3.5624 11 8 3.1319 3.6669 3.5366 12 7 1.8592 2.2805 4.7164 13 6 2.6478 2.4591 5.8597 14 6 2.0550 2.4813 7.1158 15 6 2.8323 2.6568 8.2426 16 6 4.2072 2.8119 8.1206 17 8 4.9719 2.9851 9.2292 18 6 4.3540 2.8747 10.4223 19 1 3.3183 2.5719 10.4680 20 6 5.0480 3.1497 11.5904 21 7 6.3096 3.5190 11.5347 22 14 4.1916 2.9974 13.2435 23 1 4.3596 1.6162 13.7627 24 1 4.7890 3.9622 14.2013 25 1 2.7454 3.2925 13.0809 26 6 4.7993 2.7955 6.8642 27 6 4.0227 2.6147 5.7378 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0470 -0.9353 -0.0004 32 1 3.2420 1.1345 -0.0004 33 1 0.3402 2.2423 0.0904 34 1 1.6025 2.9716 -0.9307 35 1 1.4569 5.2445 1.9998 36 1 1.5415 5.1951 0.2226 37 1 -0.7120 5.3315 1.0026 38 1 0.7571 2.0129 2.4573 39 1 1.0692 1.7191 4.7550 40 1 0.9860 2.3603 7.2106 41 1 2.3714 2.6745 9.2192 42 1 6.7951 3.7118 12.3520 43 1 5.8678 2.9205 6.7691 44 1 4.4836 2.5979 4.7611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:01 Heat of formation + Delta-G solvation = -62.626571 kcal Electronic energy + Delta-G solvation = -26142.655149 eV Core-core repulsion = 22254.449253 eV Total energy + Delta-G solvation = -3888.205896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.40421 -38.91779 -37.95540 -36.43478 -36.22373 -34.17755 -33.86771 -32.15134 -30.74215 -30.15579 -28.06297 -27.41833 -25.62036 -25.27924 -22.60968 -22.05561 -20.96208 -20.45348 -19.03264 -18.35480 -17.84604 -17.53030 -17.26178 -16.63624 -16.04337 -15.36829 -15.17268 -14.75946 -14.51976 -14.34158 -14.15154 -13.94205 -13.71680 -13.51591 -13.44384 -13.09620 -12.77691 -12.64202 -12.52545 -12.29337 -12.01606 -11.77307 -11.53192 -11.48537 -11.31063 -11.04214 -10.96603 -10.63161 -10.43069 -10.29612 -9.92088 -9.61514 -9.28815 -9.19715 -9.06690 -8.65516 -8.14478 -6.84054 -6.40178 -3.98101 1.94944 2.21901 2.28907 2.77303 3.14579 3.15929 3.20820 3.39196 4.00269 4.03107 4.28889 4.44298 4.64426 4.70334 4.82722 4.94558 5.05819 5.14899 5.15337 5.19824 5.33323 5.37289 5.45738 5.51920 5.57651 5.62009 5.66420 5.83345 5.92432 6.19859 6.26459 6.32088 6.38271 6.44987 6.58116 6.77080 6.88231 6.98305 7.18735 7.27628 7.31553 7.33604 7.48475 7.85803 8.04287 8.12923 8.75079 9.05326 9.77027 10.78066 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.002266 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.812657 B =12352.800392 C =12510.597455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.101 4.101 5 C 0.174 3.826 6 H 0.101 0.899 7 C 0.060 3.940 8 O -0.571 6.571 9 N -0.733 5.733 10 C 0.700 3.300 11 O -0.580 6.580 12 N -0.676 5.676 13 C 0.059 3.941 14 C -0.094 4.094 15 C -0.218 4.218 16 C 0.144 3.856 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.177 4.177 27 C -0.068 4.068 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.377 0.623 38 H 0.395 0.605 39 H 0.397 0.603 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.269 0.731 43 H 0.120 0.880 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.019 -3.422 -22.630 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.183 4.183 3 C -0.175 4.175 4 C -0.138 4.138 5 C 0.069 3.931 6 H 0.119 0.881 7 C -0.019 4.019 8 O -0.376 6.376 9 N -0.388 5.388 10 C 0.401 3.599 11 O -0.457 6.457 12 N -0.323 5.323 13 C -0.034 4.034 14 C -0.115 4.115 15 C -0.238 4.238 16 C 0.091 3.909 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.196 4.196 27 C -0.088 4.088 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.224 0.776 38 H 0.229 0.771 39 H 0.231 0.769 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.079 0.921 43 H 0.138 0.862 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.548 -3.223 -22.465 25.933 hybrid contribution -1.326 0.014 0.869 1.586 sum -13.874 -3.210 -21.596 25.868 Atomic orbital electron populations 1.20865 0.93381 1.02036 1.01875 1.22799 0.96199 0.97881 1.01406 1.22803 0.99682 0.94118 1.00902 1.20992 1.01213 0.94131 0.97458 1.20816 0.99825 0.90007 0.82490 0.88098 1.22730 0.81169 0.97533 1.00494 1.86426 1.18079 1.35559 1.97508 1.45017 1.36568 1.49726 1.07511 1.15970 0.82688 0.80877 0.80380 1.90934 1.31221 1.38819 1.84736 1.42331 1.30068 1.51485 1.08372 1.17030 0.90001 1.11978 0.84389 1.20444 0.98310 1.01749 0.90971 1.20958 0.93601 1.10565 0.98631 1.19405 0.89969 0.93259 0.88299 1.84003 1.35114 1.77441 1.11653 1.21289 0.97456 1.47338 0.80566 0.89174 1.25275 0.95840 0.96448 0.99045 1.70045 1.08363 1.42490 1.28954 0.85725 0.79011 0.78404 0.80339 1.19933 1.20318 1.19260 1.20119 0.99836 1.10014 0.89680 1.20620 0.91485 0.98666 0.98015 0.91720 0.92333 0.91681 0.87483 0.87331 0.89458 0.89698 0.92614 0.92922 0.77608 0.77137 0.76928 0.87270 0.85166 0.92080 0.86202 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 8.65 36.01 0.31 -0.46 16 2 C -0.16 -1.22 10.26 -36.03 -0.37 -1.59 16 3 C -0.16 -1.23 9.25 -36.03 -0.33 -1.56 16 4 C -0.10 -0.73 4.72 -27.89 -0.13 -0.86 16 5 C 0.17 1.64 2.36 -67.93 -0.16 1.48 16 6 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 7 C 0.06 0.53 6.85 37.16 0.25 0.78 16 8 O -0.57 -4.53 12.83 -35.23 -0.45 -4.98 16 9 N -0.73 -7.77 4.74 -58.68 -0.28 -8.05 16 10 C 0.70 10.38 8.26 -86.91 -0.72 9.66 16 11 O -0.58 -10.90 13.71 5.28 0.07 -10.83 16 12 N -0.68 -9.72 5.35 -14.18 -0.08 -9.80 16 13 C 0.06 1.08 6.28 -83.61 -0.52 0.56 16 14 C -0.09 -1.74 9.96 -39.41 -0.39 -2.14 16 15 C -0.22 -4.77 9.12 -39.42 -0.36 -5.13 16 16 C 0.14 3.58 6.65 -39.09 -0.26 3.32 16 17 O -0.18 -5.18 9.75 0.01 0.00 -5.18 16 18 C -0.39 -11.00 9.44 30.88 0.29 -10.71 16 19 H 0.09 2.34 5.29 -52.48 -0.28 2.06 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 22 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 26 C -0.18 -3.98 9.98 -39.42 -0.39 -4.38 16 27 C -0.07 -1.37 8.65 -39.42 -0.34 -1.72 16 28 H 0.06 0.37 7.85 -51.93 -0.41 -0.03 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 31 H 0.11 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.11 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.09 0.64 5.38 -51.93 -0.28 0.36 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 1.62 9.12 45.56 0.42 2.03 16 38 H 0.39 3.43 8.62 -40.82 -0.35 3.07 16 39 H 0.40 4.30 8.83 -40.82 -0.36 3.94 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.13 2.82 5.71 -52.48 -0.30 2.52 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 44 H 0.13 2.49 6.43 -52.48 -0.34 2.15 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -34.54 372.42 -7.82 -42.36 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.21 Total: 11.89 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.22 Total: -11.77 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.40 Total: -42.74 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.38 Total: -20.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.54 -7.82 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.270 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds