Wall clock time and date at job start Tue Mar 31 2020 12:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.31001 * 119.99823 * 2 1 4 4 C 1.50698 * 119.99966 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47307 * 125.00001 * 4 3 2 6 6 H 1.08996 * 109.47152 * 54.99738 * 5 4 3 7 7 C 1.52996 * 109.47428 * 175.00230 * 5 4 3 8 8 O 1.42897 * 109.47491 * 54.99594 * 7 5 4 9 9 N 1.46503 * 109.46794 * 294.99685 * 5 4 3 10 10 C 1.34777 * 119.99928 * 154.99937 * 9 5 4 11 11 O 1.21592 * 120.00011 * 359.97438 * 10 9 5 12 12 N 1.34780 * 120.00205 * 180.02562 * 10 9 5 13 13 C 1.40026 * 120.00035 * 174.73450 * 12 10 9 14 14 C 1.38919 * 119.99951 * 146.34273 * 13 12 10 15 15 C 1.38007 * 119.99585 * 179.97438 * 14 13 12 16 16 C 1.38901 * 120.00380 * 0.02562 * 15 14 13 17 17 O 1.35785 * 119.99793 * 179.97438 * 16 15 14 18 18 C 1.34806 * 117.00196 * 5.91112 * 17 16 15 19 19 H 1.08005 * 119.99819 * 5.40940 * 18 17 16 20 20 C 1.38627 * 120.00152 * 185.40759 * 18 17 16 21 21 N 1.31569 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47144 * 90.00062 * 22 20 18 24 24 H 1.48497 * 109.47363 * 210.00070 * 22 20 18 25 25 H 1.48499 * 109.47399 * 330.00142 * 22 20 18 26 26 C 1.38903 * 119.99915 * 0.25206 * 16 15 14 27 27 C 1.38002 * 120.00300 * 359.49166 * 26 16 15 28 28 H 1.08997 * 109.47312 * 60.00031 * 1 2 3 29 29 H 1.09000 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46905 * 299.99593 * 1 2 3 31 31 H 1.07997 * 120.00236 * 180.02562 * 2 1 3 32 32 H 1.08002 * 119.99946 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47219 * 4.99412 * 4 3 2 34 34 H 1.09000 * 109.47259 * 245.00056 * 4 3 2 35 35 H 1.08997 * 109.47680 * 174.99947 * 7 5 4 36 36 H 1.09002 * 109.46833 * 294.99664 * 7 5 4 37 37 H 0.96697 * 114.00613 * 180.02562 * 8 7 5 38 38 H 0.96996 * 120.00615 * 335.00408 * 9 5 4 39 39 H 0.96996 * 119.99822 * 354.72962 * 12 10 9 40 40 H 1.08001 * 119.99542 * 0.02562 * 14 13 12 41 41 H 1.08007 * 119.99401 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00671 * 179.97438 * 21 20 18 43 43 H 1.08003 * 119.99698 * 179.72081 * 26 16 15 44 44 H 1.08005 * 120.00288 * 180.24814 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 6 1.8704 3.2947 1.1822 6 1 2.9526 3.4177 1.1405 7 6 1.1980 4.6672 1.1122 8 8 -0.2198 4.5005 1.0494 9 7 1.5019 2.6339 2.4367 10 6 2.1978 2.8888 3.5624 11 8 3.1319 3.6669 3.5366 12 7 1.8592 2.2805 4.7164 13 6 2.6478 2.4591 5.8597 14 6 2.0550 2.4813 7.1158 15 6 2.8323 2.6568 8.2426 16 6 4.2072 2.8119 8.1206 17 8 4.9719 2.9851 9.2292 18 6 4.3540 2.8747 10.4223 19 1 3.3183 2.5719 10.4680 20 6 5.0480 3.1497 11.5904 21 7 6.3096 3.5190 11.5347 22 14 4.1916 2.9974 13.2435 23 1 4.3596 1.6162 13.7627 24 1 4.7890 3.9622 14.2013 25 1 2.7454 3.2925 13.0809 26 6 4.7993 2.7955 6.8642 27 6 4.0227 2.6147 5.7378 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0470 -0.9353 -0.0004 32 1 3.2420 1.1345 -0.0004 33 1 0.3402 2.2423 0.0904 34 1 1.6025 2.9716 -0.9307 35 1 1.4569 5.2445 1.9998 36 1 1.5415 5.1951 0.2226 37 1 -0.7120 5.3315 1.0026 38 1 0.7571 2.0129 2.4573 39 1 1.0692 1.7191 4.7550 40 1 0.9860 2.3603 7.2106 41 1 2.3714 2.6745 9.2192 42 1 6.7951 3.7118 12.3520 43 1 5.8678 2.9205 6.7691 44 1 4.4836 2.5979 4.7611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116631811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:00 Heat of formation + Delta-G solvation = -88.636602 kcal Electronic energy + Delta-G solvation = -26143.783029 eV Core-core repulsion = 22254.449253 eV Total energy + Delta-G solvation = -3889.333776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66895 -40.54047 -39.02976 -37.93769 -36.84388 -35.39167 -35.03437 -34.12095 -31.85789 -31.62896 -29.23951 -28.42977 -27.25789 -26.20811 -24.05950 -23.56582 -22.20351 -21.63450 -20.13673 -19.60295 -19.13437 -18.94277 -18.28151 -17.99065 -17.06379 -16.51371 -16.33310 -16.14302 -15.88723 -15.59477 -15.49234 -15.25389 -14.96145 -14.70467 -14.52433 -14.27810 -14.16062 -13.75628 -13.56007 -13.37277 -13.27324 -13.14750 -12.96442 -12.72368 -12.52621 -12.36440 -12.10843 -11.98773 -11.55815 -11.39199 -11.32128 -10.98522 -10.87748 -10.55271 -10.08621 -9.82888 -9.79648 -8.54147 -8.43634 -6.10701 0.54278 0.60474 1.36437 1.37679 1.46758 1.55512 1.65206 2.13005 2.20576 2.86325 3.19218 3.23867 3.42710 3.53587 3.79141 4.03348 4.07640 4.15412 4.23827 4.35155 4.44229 4.51653 4.55432 4.58441 4.61643 4.74691 4.80616 4.85284 4.89623 4.98879 5.08027 5.19596 5.20358 5.32176 5.33189 5.45113 5.53559 5.61535 5.71382 5.82253 5.98739 6.03721 6.06866 6.21589 6.87786 7.00690 7.06562 7.57059 7.82372 8.79980 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.002266 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.812657 B =12352.800392 C =12510.597455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.163 4.163 3 C -0.171 4.171 4 C -0.087 4.087 5 C 0.169 3.831 6 H 0.084 0.916 7 C 0.067 3.933 8 O -0.576 6.576 9 N -0.712 5.712 10 C 0.698 3.302 11 O -0.621 6.621 12 N -0.665 5.665 13 C 0.086 3.914 14 C -0.083 4.083 15 C -0.217 4.217 16 C 0.105 3.895 17 O -0.232 6.232 18 C -0.411 4.411 19 H 0.106 0.894 20 C -0.026 4.026 21 N -0.924 5.924 22 Si 1.021 2.979 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.250 1.250 26 C -0.187 4.187 27 C -0.073 4.073 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.394 0.606 38 H 0.409 0.591 39 H 0.420 0.580 40 H 0.157 0.843 41 H 0.132 0.868 42 H 0.272 0.728 43 H 0.111 0.889 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.931 -4.275 -24.173 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.181 4.181 3 C -0.189 4.189 4 C -0.124 4.124 5 C 0.063 3.937 6 H 0.102 0.898 7 C -0.012 4.012 8 O -0.384 6.384 9 N -0.367 5.367 10 C 0.399 3.601 11 O -0.501 6.501 12 N -0.314 5.314 13 C -0.008 4.008 14 C -0.104 4.104 15 C -0.237 4.237 16 C 0.055 3.945 17 O -0.139 6.139 18 C -0.487 4.487 19 H 0.123 0.877 20 C -0.223 4.223 21 N -0.562 5.562 22 Si 0.840 3.160 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.173 1.173 26 C -0.207 4.207 27 C -0.093 4.093 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.244 0.756 38 H 0.245 0.755 39 H 0.257 0.743 40 H 0.174 0.826 41 H 0.150 0.850 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.558 -4.110 -24.108 29.534 hybrid contribution -0.252 0.236 0.934 0.996 sum -16.810 -3.874 -23.173 28.889 Atomic orbital electron populations 1.20896 0.92266 1.02693 1.02332 1.22968 0.97107 0.97701 1.00367 1.22819 0.99420 0.94649 1.02019 1.20903 1.01212 0.93473 0.96856 1.20971 0.99188 0.91008 0.82496 0.89825 1.22558 0.81851 0.96594 1.00242 1.86375 1.17461 1.37105 1.97445 1.44893 1.35992 1.49193 1.06605 1.16132 0.82452 0.80443 0.81100 1.90924 1.33147 1.40662 1.85371 1.42148 1.30291 1.51831 1.07134 1.17124 0.89585 1.08182 0.85915 1.20785 1.00271 0.99811 0.89509 1.21108 0.92573 1.09974 1.00041 1.19840 0.91461 0.95284 0.87952 1.83966 1.36988 1.80196 1.12772 1.21850 0.98259 1.47620 0.80960 0.87693 1.26631 0.96565 0.95784 1.03360 1.70205 1.10556 1.45210 1.30229 0.84560 0.78430 0.78757 0.74288 1.18802 1.19921 1.17324 1.20229 0.99981 1.10488 0.90004 1.20705 0.92598 0.98830 0.97203 0.91124 0.91696 0.91226 0.87520 0.88250 0.88824 0.88303 0.95426 0.90727 0.75628 0.75532 0.74253 0.82570 0.85036 0.91939 0.87044 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.65 71.24 0.62 -0.55 16 2 C -0.16 -2.04 10.26 25.65 0.26 -1.78 16 3 C -0.17 -2.35 9.25 25.64 0.24 -2.11 16 4 C -0.09 -1.04 4.72 29.85 0.14 -0.90 16 5 C 0.17 2.85 2.36 44.99 0.11 2.96 16 6 H 0.08 1.75 7.58 -2.39 -0.02 1.73 16 7 C 0.07 1.03 6.85 71.98 0.49 1.52 16 8 O -0.58 -7.35 12.83 -148.98 -1.91 -9.26 16 9 N -0.71 -13.29 4.74 -457.81 -2.17 -15.46 16 10 C 0.70 19.23 8.26 179.05 1.48 20.71 16 11 O -0.62 -22.85 13.71 -4.00 -0.05 -22.90 16 12 N -0.66 -17.00 5.35 -317.03 -1.70 -18.69 16 13 C 0.09 2.98 6.28 38.16 0.24 3.22 16 14 C -0.08 -2.84 9.96 22.38 0.22 -2.62 16 15 C -0.22 -9.40 9.12 22.37 0.20 -9.20 16 16 C 0.11 5.41 6.65 22.59 0.15 5.56 16 17 O -0.23 -14.29 9.75 -22.87 -0.22 -14.51 16 18 C -0.41 -24.01 9.44 67.91 0.64 -23.37 16 19 H 0.11 5.52 5.29 -2.91 -0.02 5.50 16 20 C -0.03 -1.51 5.49 84.82 0.47 -1.05 16 21 N -0.92 -57.63 13.67 21.61 0.30 -57.33 16 22 Si 1.02 42.93 29.55 68.60 2.03 44.95 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 26 C -0.19 -8.78 9.98 22.37 0.22 -8.56 16 27 C -0.07 -2.95 8.65 22.37 0.19 -2.76 16 28 H 0.07 0.59 7.85 -2.39 -0.02 0.58 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 31 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.10 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.09 1.04 5.38 -2.39 -0.01 1.03 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.39 2.17 9.12 -74.06 -0.68 1.50 16 38 H 0.41 5.62 8.62 -92.71 -0.80 4.82 16 39 H 0.42 7.18 8.83 -92.71 -0.82 6.36 16 40 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.13 5.61 5.71 -2.91 -0.02 5.59 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 44 H 0.13 5.12 6.43 -2.91 -0.02 5.10 16 Total: -1.00 -79.75 372.42 0.71 -79.05 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -1.23 Total: 33.08 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 5.68 Total: -18.92 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -3.57 Total: -91.48 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -2.19 Total: -46.67 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -79.75 0.71 -79.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.591 kcal (2) G-P(sol) polarization free energy of solvation -79.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds