Wall clock time and date at job start Tue Mar 31 2020 12:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 N 1.46494 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99927 * 269.99271 * 4 3 2 6 6 H 1.07997 * 119.99810 * 140.69488 * 5 4 3 7 7 C 1.38940 * 120.00083 * 320.70247 * 5 4 3 8 8 N 1.31413 * 120.00320 * 159.03233 * 7 5 4 9 9 Si 1.86801 * 120.00206 * 339.03201 * 7 5 4 10 10 H 1.48501 * 109.47274 * 95.81995 * 9 7 5 11 11 H 1.48501 * 109.47193 * 215.82038 * 9 7 5 12 12 H 1.48500 * 109.46897 * 335.81650 * 9 7 5 13 13 C 1.34783 * 120.00419 * 89.99890 * 4 3 2 14 14 O 1.21295 * 119.99230 * 5.01173 * 13 4 3 15 15 C 1.50694 * 120.00277 * 185.01165 * 13 4 3 16 16 C 1.53001 * 109.47074 * 185.43349 * 15 13 4 17 17 N 1.46501 * 109.46687 * 178.84285 * 16 15 13 18 18 C 1.34779 * 119.99766 * 179.97438 * 17 16 15 19 19 O 1.21781 * 119.99874 * 0.02562 * 18 17 16 20 20 C 1.41541 * 120.00158 * 180.02562 * 18 17 16 21 21 C 1.35629 * 120.00214 * 180.02562 * 20 18 17 22 22 C 1.41605 * 120.00385 * 179.97438 * 21 20 18 23 23 C 1.37948 * 126.10518 * 180.02562 * 22 21 20 24 24 C 1.40320 * 106.52937 * 179.97438 * 23 22 21 25 25 C 1.35156 * 107.20241 * 359.97438 * 24 23 22 26 26 O 1.34014 * 109.03523 * 359.77575 * 25 24 23 27 27 H 1.08996 * 109.47096 * 60.00236 * 1 2 3 28 28 H 1.09006 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47173 * 299.99952 * 1 2 3 30 30 H 1.09002 * 109.47071 * 239.99274 * 2 1 3 31 31 H 1.09010 * 109.47229 * 119.99627 * 2 1 3 32 32 H 1.08994 * 109.47277 * 59.99690 * 3 2 1 33 33 H 1.08996 * 109.46785 * 299.99955 * 3 2 1 34 34 H 0.96996 * 120.00765 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47044 * 65.43294 * 15 13 4 36 36 H 1.09001 * 109.47080 * 305.43319 * 15 13 4 37 37 H 1.08993 * 109.46863 * 58.84728 * 16 15 13 38 38 H 1.09002 * 109.46891 * 298.84339 * 16 15 13 39 39 H 0.96995 * 120.00667 * 0.02562 * 17 16 15 40 40 H 1.07997 * 120.00141 * 0.02562 * 20 18 17 41 41 H 1.08004 * 119.99998 * 0.02562 * 21 20 18 42 42 H 1.07998 * 126.73809 * 359.97438 * 23 22 21 43 43 H 1.07993 * 126.39806 * 179.97438 * 24 23 22 44 44 H 1.07999 * 125.48333 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1909 1.4424 1.1865 6 1 5.0877 0.8499 1.2918 7 6 3.7324 2.2044 2.2539 8 7 4.1086 1.9132 3.4788 9 14 2.5809 3.6432 1.9479 10 1 1.1760 3.2026 2.1411 11 1 2.8920 4.7378 2.9019 12 1 2.7594 4.1329 0.5574 13 6 4.1784 1.4426 -1.1681 14 8 3.5749 1.5345 -2.2162 15 6 5.6811 1.3285 -1.1712 16 6 6.2017 1.4889 -2.6009 17 7 7.6644 1.4056 -2.6001 18 6 8.3465 1.5200 -3.7569 19 8 7.7470 1.6931 -4.8027 20 6 9.7596 1.4390 -3.7562 21 6 10.4460 1.5547 -4.9202 22 6 11.8598 1.4742 -4.9196 23 6 12.6803 1.5748 -6.0240 24 6 13.9965 1.4383 -5.5572 25 6 13.9299 1.2645 -4.2185 26 8 12.6453 1.2917 -3.8376 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.7882 2.4449 4.2241 35 1 5.9721 0.3512 -0.7860 36 1 6.1060 2.1090 -0.5401 37 1 5.8932 2.4578 -2.9933 38 1 5.7930 0.6962 -3.2275 39 1 8.1419 1.2674 -1.7672 40 1 10.2912 1.2851 -2.8289 41 1 9.9144 1.7090 -5.8476 42 1 12.3704 1.7284 -7.0471 43 1 14.8949 1.4668 -6.1558 44 1 14.7760 1.1289 -3.5611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:42 Heat of formation + Delta-G solvation = -40.407099 kcal Electronic energy + Delta-G solvation = -25555.208389 eV Core-core repulsion = 21667.966001 eV Total energy + Delta-G solvation = -3887.242387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.86591 -39.78652 -38.92029 -35.67546 -34.83977 -34.23742 -33.36887 -33.04004 -31.71838 -30.66503 -29.02199 -26.24283 -25.17846 -24.35816 -22.54743 -22.15855 -21.08375 -20.86003 -19.76905 -18.93799 -17.86901 -17.25234 -16.59298 -16.43493 -16.40668 -15.72772 -15.50811 -15.17875 -14.85297 -14.41386 -14.15772 -13.99811 -13.54632 -13.34687 -13.25089 -13.13685 -12.98842 -12.70790 -12.39218 -12.33085 -12.21773 -11.70706 -11.55437 -11.25414 -11.00668 -10.94007 -10.85876 -10.77521 -10.46421 -10.24545 -10.09677 -9.95419 -9.80565 -9.23689 -8.88971 -8.65742 -8.23973 -7.83270 -6.55706 -4.16991 0.21339 1.82841 2.42254 2.61974 3.01137 3.17845 3.27154 3.35979 3.44747 3.65373 4.07368 4.35505 4.46617 4.57863 4.64102 4.88846 4.90500 5.11656 5.32001 5.40373 5.42322 5.55109 5.58996 5.66868 5.70189 5.77114 5.78452 5.92066 5.99245 6.04624 6.13455 6.19846 6.33263 6.35429 6.41745 6.41881 6.47372 6.67530 6.72310 6.73742 6.88450 7.33242 7.63634 8.00483 8.16471 8.32515 8.87590 9.27398 9.62437 10.54642 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.002183 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.314442 B =12823.279613 C =13631.438735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.103 3.897 4 N -0.465 5.465 5 C -0.348 4.348 6 H 0.104 0.896 7 C 0.070 3.930 8 N -0.859 5.859 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.485 3.515 14 O -0.596 6.596 15 C -0.132 4.132 16 C 0.134 3.866 17 N -0.722 5.722 18 C 0.543 3.457 19 O -0.548 6.548 20 C -0.196 4.196 21 C 0.000 4.000 22 C -0.005 4.005 23 C -0.168 4.168 24 C -0.219 4.219 25 C -0.022 4.022 26 O -0.165 6.165 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.275 0.725 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.401 0.599 40 H 0.131 0.869 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.226 -1.772 -10.279 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.185 5.185 5 C -0.474 4.474 6 H 0.121 0.879 7 C -0.138 4.138 8 N -0.493 5.493 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.185 1.185 13 C 0.274 3.726 14 O -0.481 6.481 15 C -0.173 4.173 16 C 0.011 3.989 17 N -0.372 5.372 18 C 0.333 3.667 19 O -0.429 6.429 20 C -0.217 4.217 21 C -0.020 4.020 22 C -0.054 4.054 23 C -0.187 4.187 24 C -0.238 4.238 25 C -0.091 4.091 26 O -0.060 6.060 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.149 0.851 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.170 0.830 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 14.333 -1.591 -10.976 18.122 hybrid contribution -0.090 0.667 0.682 0.958 sum 14.242 -0.924 -10.293 17.597 Atomic orbital electron populations 1.21708 0.96334 1.01101 1.01405 1.21765 0.94843 0.97903 1.02440 1.21625 0.82584 0.96678 1.01135 1.43724 1.03977 1.65110 1.05674 1.19033 1.12035 1.28755 0.87619 0.87869 1.25330 0.96803 0.97001 0.94692 1.69753 1.43627 1.37605 0.98356 0.86950 0.80597 0.82858 0.79344 1.20041 1.21473 1.18488 1.20123 0.88984 0.79809 0.83680 1.90577 1.70481 1.55184 1.31891 1.21521 0.94995 1.04534 0.96206 1.21142 0.77437 1.03288 0.97053 1.46024 1.08516 1.73082 1.09574 1.16954 0.87911 0.77801 0.84019 1.90850 1.71268 1.49532 1.31231 1.22170 0.94497 1.05432 0.99571 1.20665 0.87557 0.93691 1.00063 1.19933 0.91658 1.09081 0.84740 1.22376 0.92490 1.04422 0.99423 1.21794 0.98520 1.08457 0.95040 1.24329 0.84294 1.04134 0.96379 1.84116 1.17112 1.69578 1.35234 0.92993 0.92991 0.93004 0.92171 0.91200 0.91864 0.91260 0.91426 0.89295 0.88399 0.90904 0.90826 0.76429 0.85115 0.82174 0.82606 0.82964 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.15 0.37 -1.96 16 2 C -0.13 -2.51 6.26 -26.74 -0.17 -2.68 16 3 C 0.10 2.25 4.24 -4.05 -0.02 2.24 16 4 N -0.46 -10.85 2.15 -114.82 -0.25 -11.10 16 5 C -0.35 -8.60 8.93 -14.93 -0.13 -8.74 16 6 H 0.10 2.61 7.44 -52.49 -0.39 2.22 16 7 C 0.07 1.77 5.32 -17.47 -0.09 1.68 16 8 N -0.86 -22.87 13.96 55.50 0.77 -22.10 16 9 Si 0.88 20.17 25.01 -169.99 -4.25 15.92 16 10 H -0.27 -6.09 6.71 56.52 0.38 -5.71 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.49 10.89 7.62 -10.99 -0.08 10.81 16 14 O -0.60 -14.66 15.55 5.54 0.09 -14.57 16 15 C -0.13 -2.38 4.46 -27.89 -0.12 -2.50 16 16 C 0.13 2.30 4.97 -4.04 -0.02 2.28 16 17 N -0.72 -10.05 5.55 -63.24 -0.35 -10.40 16 18 C 0.54 8.00 7.56 -15.00 -0.11 7.89 16 19 O -0.55 -10.11 16.11 5.12 0.08 -10.03 16 20 C -0.20 -2.24 9.41 -39.26 -0.37 -2.61 16 21 C 0.00 0.00 9.39 -39.23 -0.37 -0.37 16 22 C 0.00 -0.05 6.84 -38.40 -0.26 -0.31 16 23 C -0.17 -1.40 10.90 -38.91 -0.42 -1.82 16 24 C -0.22 -1.54 10.87 -39.90 -0.43 -1.97 16 25 C -0.02 -0.15 12.06 29.64 0.36 0.20 16 26 O -0.17 -1.60 10.18 4.69 0.05 -1.55 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 32 H 0.06 1.42 3.41 -51.93 -0.18 1.24 16 33 H 0.07 1.53 7.36 -51.93 -0.38 1.15 16 34 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.09 1.47 8.04 -51.93 -0.42 1.06 16 36 H 0.10 1.72 7.86 -51.93 -0.41 1.31 16 37 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 38 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 39 H 0.40 4.41 8.43 -40.82 -0.34 4.07 16 40 H 0.13 1.24 7.72 -52.49 -0.41 0.84 16 41 H 0.16 1.66 7.46 -52.48 -0.39 1.27 16 42 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -31.95 375.27 -6.38 -38.33 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.30 Total: 7.70 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.88 Total: 2.14 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.18 Total: -43.60 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: 0.22 Total: -26.15 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.25 Total: 15.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.95 -6.38 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.075 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds