Wall clock time and date at job start Tue Mar 31 2020 12:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 N 1.46494 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99927 * 269.99271 * 4 3 2 6 6 H 1.07997 * 119.99810 * 140.69488 * 5 4 3 7 7 C 1.38940 * 120.00083 * 320.70247 * 5 4 3 8 8 N 1.31413 * 120.00320 * 159.03233 * 7 5 4 9 9 Si 1.86801 * 120.00206 * 339.03201 * 7 5 4 10 10 H 1.48501 * 109.47274 * 95.81995 * 9 7 5 11 11 H 1.48501 * 109.47193 * 215.82038 * 9 7 5 12 12 H 1.48500 * 109.46897 * 335.81650 * 9 7 5 13 13 C 1.34783 * 120.00419 * 89.99890 * 4 3 2 14 14 O 1.21295 * 119.99230 * 5.01173 * 13 4 3 15 15 C 1.50694 * 120.00277 * 185.01165 * 13 4 3 16 16 C 1.53001 * 109.47074 * 185.43349 * 15 13 4 17 17 N 1.46501 * 109.46687 * 178.84285 * 16 15 13 18 18 C 1.34779 * 119.99766 * 179.97438 * 17 16 15 19 19 O 1.21781 * 119.99874 * 0.02562 * 18 17 16 20 20 C 1.41541 * 120.00158 * 180.02562 * 18 17 16 21 21 C 1.35629 * 120.00214 * 180.02562 * 20 18 17 22 22 C 1.41605 * 120.00385 * 179.97438 * 21 20 18 23 23 C 1.37948 * 126.10518 * 180.02562 * 22 21 20 24 24 C 1.40320 * 106.52937 * 179.97438 * 23 22 21 25 25 C 1.35156 * 107.20241 * 359.97438 * 24 23 22 26 26 O 1.34014 * 109.03523 * 359.77575 * 25 24 23 27 27 H 1.08996 * 109.47096 * 60.00236 * 1 2 3 28 28 H 1.09006 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47173 * 299.99952 * 1 2 3 30 30 H 1.09002 * 109.47071 * 239.99274 * 2 1 3 31 31 H 1.09010 * 109.47229 * 119.99627 * 2 1 3 32 32 H 1.08994 * 109.47277 * 59.99690 * 3 2 1 33 33 H 1.08996 * 109.46785 * 299.99955 * 3 2 1 34 34 H 0.96996 * 120.00765 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47044 * 65.43294 * 15 13 4 36 36 H 1.09001 * 109.47080 * 305.43319 * 15 13 4 37 37 H 1.08993 * 109.46863 * 58.84728 * 16 15 13 38 38 H 1.09002 * 109.46891 * 298.84339 * 16 15 13 39 39 H 0.96995 * 120.00667 * 0.02562 * 17 16 15 40 40 H 1.07997 * 120.00141 * 0.02562 * 20 18 17 41 41 H 1.08004 * 119.99998 * 0.02562 * 21 20 18 42 42 H 1.07998 * 126.73809 * 359.97438 * 23 22 21 43 43 H 1.07993 * 126.39806 * 179.97438 * 24 23 22 44 44 H 1.07999 * 125.48333 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1909 1.4424 1.1865 6 1 5.0877 0.8499 1.2918 7 6 3.7324 2.2044 2.2539 8 7 4.1086 1.9132 3.4788 9 14 2.5809 3.6432 1.9479 10 1 1.1760 3.2026 2.1411 11 1 2.8920 4.7378 2.9019 12 1 2.7594 4.1329 0.5574 13 6 4.1784 1.4426 -1.1681 14 8 3.5749 1.5345 -2.2162 15 6 5.6811 1.3285 -1.1712 16 6 6.2017 1.4889 -2.6009 17 7 7.6644 1.4056 -2.6001 18 6 8.3465 1.5200 -3.7569 19 8 7.7470 1.6931 -4.8027 20 6 9.7596 1.4390 -3.7562 21 6 10.4460 1.5547 -4.9202 22 6 11.8598 1.4742 -4.9196 23 6 12.6803 1.5748 -6.0240 24 6 13.9965 1.4383 -5.5572 25 6 13.9299 1.2645 -4.2185 26 8 12.6453 1.2917 -3.8376 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.7882 2.4449 4.2241 35 1 5.9721 0.3512 -0.7860 36 1 6.1060 2.1090 -0.5401 37 1 5.8932 2.4578 -2.9933 38 1 5.7930 0.6962 -3.2275 39 1 8.1419 1.2674 -1.7672 40 1 10.2912 1.2851 -2.8289 41 1 9.9144 1.7090 -5.8476 42 1 12.3704 1.7284 -7.0471 43 1 14.8949 1.4668 -6.1558 44 1 14.7760 1.1289 -3.5611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:41 Heat of formation + Delta-G solvation = -60.867085 kcal Electronic energy + Delta-G solvation = -25556.095600 eV Core-core repulsion = 21667.966001 eV Total energy + Delta-G solvation = -3888.129599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.48946 -41.09770 -40.59936 -37.36228 -36.23659 -35.16784 -34.73251 -33.98856 -33.55611 -32.00046 -29.86226 -27.75199 -26.93750 -25.53523 -23.77148 -22.82493 -22.60527 -21.83033 -20.99148 -20.45998 -18.87976 -18.52274 -18.09367 -17.83707 -17.30090 -17.06964 -16.86156 -16.66146 -15.98699 -15.76564 -15.69370 -15.51142 -14.90420 -14.83336 -14.58398 -14.11641 -13.93392 -13.91095 -13.68103 -13.52278 -13.32907 -13.25150 -13.08560 -12.75993 -12.58876 -12.48915 -12.36881 -12.12581 -11.91760 -11.70200 -11.54237 -11.20468 -11.06639 -10.84249 -10.51282 -10.16895 -9.72517 -8.95010 -8.52769 -6.14861 -0.59160 1.16611 1.17216 1.30918 1.41568 1.71674 1.84463 2.02837 2.12138 2.17654 2.41992 2.70893 2.99251 3.70626 3.91441 3.95197 3.99288 4.07799 4.11169 4.16497 4.18701 4.24130 4.29044 4.39631 4.54852 4.62032 4.68477 4.73763 4.88562 4.91984 4.94767 4.99214 5.05350 5.09664 5.10673 5.22174 5.22870 5.31251 5.39916 5.50823 5.54888 6.06242 6.09597 6.24928 6.54438 6.93844 7.20628 7.38517 7.76258 8.60658 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.002183 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.314442 B =12823.279613 C =13631.438735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.095 3.905 4 N -0.475 5.475 5 C -0.341 4.341 6 H 0.095 0.905 7 C 0.037 3.963 8 N -0.890 5.890 9 Si 0.917 3.083 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.477 3.523 14 O -0.620 6.620 15 C -0.120 4.120 16 C 0.150 3.850 17 N -0.712 5.712 18 C 0.545 3.455 19 O -0.595 6.595 20 C -0.220 4.220 21 C 0.024 3.976 22 C -0.045 4.045 23 C -0.157 4.157 24 C -0.232 4.232 25 C -0.010 4.010 26 O -0.181 6.181 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.280 0.720 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.418 0.582 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.890 -1.976 -10.472 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.028 4.028 4 N -0.195 5.195 5 C -0.468 4.468 6 H 0.112 0.888 7 C -0.168 4.168 8 N -0.527 5.527 9 Si 0.744 3.256 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.267 3.733 14 O -0.506 6.506 15 C -0.160 4.160 16 C 0.025 3.975 17 N -0.363 5.363 18 C 0.337 3.663 19 O -0.479 6.479 20 C -0.240 4.240 21 C 0.004 3.996 22 C -0.093 4.093 23 C -0.176 4.176 24 C -0.250 4.250 25 C -0.079 4.079 26 O -0.077 6.077 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.255 0.745 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.189 0.811 43 H 0.196 0.804 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 16.004 -1.803 -11.135 19.580 hybrid contribution -0.395 0.705 0.612 1.014 sum 15.609 -1.098 -10.523 18.857 Atomic orbital electron populations 1.21685 0.93444 1.02895 1.01983 1.21693 0.97371 0.95708 1.01511 1.21756 0.82006 0.98432 1.00561 1.43881 1.04692 1.65428 1.05521 1.18988 1.11764 1.28170 0.87888 0.88788 1.25750 0.98088 0.98421 0.94542 1.69796 1.45222 1.38692 0.98976 0.86276 0.80188 0.80845 0.78307 1.18591 1.21082 1.19874 1.20820 0.90725 0.78723 0.83003 1.90559 1.71488 1.56012 1.32581 1.21438 0.91947 1.05757 0.96813 1.20751 0.79341 1.01413 0.95992 1.45827 1.07093 1.72935 1.10455 1.17418 0.89096 0.76515 0.83234 1.90821 1.72343 1.51992 1.32733 1.21964 0.92407 1.08815 1.00852 1.20726 0.88348 0.90898 0.99631 1.19892 0.91456 1.12380 0.85602 1.22797 0.93119 1.01898 0.99836 1.22193 0.98807 1.08525 0.95501 1.25236 0.84111 1.01248 0.97259 1.84109 1.18201 1.69914 1.35471 0.92209 0.90642 0.92631 0.92827 0.92286 0.92315 0.91756 0.91023 0.87467 0.87611 0.93080 0.92552 0.74512 0.83227 0.82526 0.81076 0.80419 0.74006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.91 71.98 0.71 -3.50 16 2 C -0.12 -4.69 6.26 30.59 0.19 -4.50 16 3 C 0.10 4.14 4.24 86.38 0.37 4.51 16 4 N -0.47 -22.19 2.15 -635.57 -1.36 -23.55 16 5 C -0.34 -16.84 8.93 84.04 0.75 -16.09 16 6 H 0.09 4.76 7.44 -2.91 -0.02 4.74 16 7 C 0.04 1.88 5.32 84.92 0.45 2.33 16 8 N -0.89 -47.24 13.96 21.66 0.30 -46.94 16 9 Si 0.92 41.12 25.01 68.60 1.72 42.83 16 10 H -0.26 -11.00 6.71 99.48 0.67 -10.33 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.48 21.57 7.62 87.65 0.67 22.24 16 14 O -0.62 -30.94 15.55 -3.07 -0.05 -30.98 16 15 C -0.12 -4.28 4.46 29.85 0.13 -4.15 16 16 C 0.15 5.24 4.97 86.38 0.43 5.67 16 17 N -0.71 -19.89 5.55 -472.19 -2.62 -22.51 16 18 C 0.55 16.36 7.56 85.06 0.64 17.01 16 19 O -0.59 -22.80 16.11 -4.61 -0.07 -22.87 16 20 C -0.22 -5.01 9.41 22.48 0.21 -4.79 16 21 C 0.02 0.51 9.39 22.50 0.21 0.72 16 22 C -0.04 -0.84 6.84 23.03 0.16 -0.68 16 23 C -0.16 -2.30 10.90 22.71 0.25 -2.06 16 24 C -0.23 -2.54 10.87 22.07 0.24 -2.30 16 25 C -0.01 -0.10 12.06 67.11 0.81 0.70 16 26 O -0.18 -3.16 10.18 -6.12 -0.06 -3.23 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.06 2.59 3.41 -2.39 -0.01 2.59 16 33 H 0.06 2.84 7.36 -2.39 -0.02 2.82 16 34 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.11 3.47 8.04 -2.39 -0.02 3.45 16 36 H 0.11 3.66 7.86 -2.39 -0.02 3.64 16 37 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 38 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 39 H 0.42 8.86 8.43 -92.71 -0.78 8.08 16 40 H 0.15 2.73 7.72 -2.91 -0.02 2.71 16 41 H 0.16 3.32 7.46 -2.91 -0.02 3.29 16 42 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 44 H 0.24 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -69.40 375.27 4.27 -65.13 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.19 Total: 26.99 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.22 Total: 15.12 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -3.68 Total: -93.00 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.18 Total: -57.08 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.72 Total: 42.83 kcal Total: -69.40 4.27 -65.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.265 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds