Wall clock time and date at job start Tue Mar 31 2020 12:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47618 * 2 1 4 4 N 1.46508 * 109.46802 * 120.00367 * 2 1 3 5 5 C 1.46504 * 119.99636 * 299.99340 * 4 2 1 6 6 C 1.50699 * 109.47160 * 270.00408 * 5 4 2 7 7 H 1.07994 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00007 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00083 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47210 * 89.99902 * 10 8 6 12 12 H 1.48500 * 109.47418 * 210.00143 * 10 8 6 13 13 H 1.48504 * 109.47081 * 330.00247 * 10 8 6 14 14 C 1.34768 * 120.00182 * 120.00158 * 4 2 1 15 15 O 1.21283 * 120.00022 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00151 * 359.97438 * 14 4 2 17 17 O 1.42904 * 109.47435 * 180.02562 * 16 14 4 18 18 C 1.35710 * 117.00085 * 180.02562 * 17 16 14 19 19 C 1.39004 * 119.90917 * 180.02562 * 18 17 16 20 20 C 1.37696 * 120.08537 * 180.02562 * 19 18 17 21 21 C 1.39738 * 119.91323 * 359.97438 * 20 19 18 22 22 C 1.47600 * 120.08720 * 180.02562 * 21 20 19 23 23 N 1.34784 * 119.99996 * 180.02562 * 22 21 20 24 24 O 1.21588 * 120.00146 * 359.97438 * 22 21 20 25 25 C 1.39735 * 119.82583 * 0.27592 * 21 20 19 26 26 C 1.37708 * 119.90544 * 359.46580 * 25 21 20 27 27 H 1.09000 * 109.47377 * 300.00467 * 1 2 3 28 28 H 1.09008 * 109.47096 * 59.99803 * 1 2 3 29 29 H 1.08997 * 109.47706 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47377 * 239.99533 * 2 1 3 31 31 H 1.08995 * 109.47241 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47076 * 300.00285 * 3 2 1 33 33 H 1.09004 * 109.46890 * 59.99812 * 3 2 1 34 34 H 1.09001 * 109.47164 * 30.00369 * 5 4 2 35 35 H 1.09002 * 109.46852 * 149.99945 * 5 4 2 36 36 H 0.97003 * 120.00002 * 180.02562 * 9 8 6 37 37 H 1.09010 * 109.46993 * 60.00791 * 16 14 4 38 38 H 1.08996 * 109.47418 * 300.00561 * 16 14 4 39 39 H 1.07995 * 119.95399 * 0.02562 * 19 18 17 40 40 H 1.08001 * 120.04377 * 179.97438 * 20 19 18 41 41 H 0.97000 * 119.99339 * 359.97438 * 23 22 21 42 42 H 0.96995 * 120.00015 * 179.72403 * 23 22 21 43 43 H 1.07997 * 120.04683 * 179.73081 * 25 21 20 44 44 H 1.07996 * 119.95407 * 180.24853 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 2.7031 0.8018 2.9830 7 1 3.5431 1.0355 2.3458 8 6 2.5816 1.4100 4.2144 9 7 3.4883 2.2751 4.6128 10 14 1.1289 1.0050 5.3169 11 1 1.4779 -0.1410 6.1945 12 1 0.7980 2.1864 6.1536 13 1 -0.0439 0.6476 4.4790 14 6 2.7930 -1.7865 1.0726 15 8 3.1976 -2.3580 2.0628 16 6 3.1567 -2.3016 -0.2961 17 8 3.9779 -3.4638 -0.1650 18 6 4.3962 -4.0553 -1.3126 19 6 5.1972 -5.1899 -1.2555 20 6 5.6242 -5.7926 -2.4176 21 6 5.2507 -5.2625 -3.6554 22 6 5.7057 -5.9059 -4.9035 23 7 5.3449 -5.3928 -6.0965 24 8 6.4068 -6.8981 -4.8554 25 6 4.4497 -4.1188 -3.7085 26 6 4.0225 -3.5250 -2.5418 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.6903 0.2974 2.4844 35 1 1.6235 -1.0227 3.2292 36 1 3.4030 2.7028 5.4793 37 1 3.7017 -1.5310 -0.8414 38 1 2.2483 -2.5586 -0.8409 39 1 5.4851 -5.5991 -0.2984 40 1 6.2469 -6.6739 -2.3724 41 1 4.7859 -4.6010 -6.1347 42 1 5.6472 -5.8132 -6.9166 43 1 4.1626 -3.7036 -4.6633 44 1 3.4001 -2.6434 -2.5820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059408316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:01 Heat of formation + Delta-G solvation = -79.643229 kcal Electronic energy + Delta-G solvation = -26462.142217 eV Core-core repulsion = 22573.198423 eV Total energy + Delta-G solvation = -3888.943794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 4.05 seconds Orbital eigenvalues (eV) -40.74245 -39.82405 -38.98713 -37.15594 -36.10156 -34.14475 -32.84166 -31.41419 -31.16175 -30.61967 -29.33590 -27.13018 -26.86316 -23.97900 -23.22127 -22.28327 -21.50698 -20.79443 -18.90033 -18.48307 -17.94485 -17.21926 -16.98559 -16.65938 -16.29956 -15.81428 -15.32263 -15.05950 -15.00048 -14.43342 -14.32316 -13.98641 -13.78756 -13.69806 -13.50538 -13.06603 -12.94345 -12.60529 -12.50512 -12.39641 -11.96238 -11.82602 -11.54890 -11.25832 -11.17642 -11.03291 -10.98664 -10.60316 -10.48094 -10.37420 -10.16662 -10.06259 -9.53792 -9.39155 -9.15879 -8.62340 -8.50709 -7.87921 -6.12390 -4.10815 0.63082 1.03266 2.59597 2.66462 3.08625 3.19540 3.25457 3.31121 3.34344 3.58582 3.80243 4.32776 4.35590 4.49093 4.59291 4.66297 4.81552 4.93292 5.00520 5.04847 5.13777 5.20577 5.31213 5.33733 5.42991 5.62585 5.78893 5.82130 5.93885 5.96496 6.03900 6.09337 6.19552 6.34683 6.38658 6.44385 6.64307 6.85216 6.89502 6.97734 7.09246 7.23817 7.55416 7.93487 8.05905 8.41153 8.76001 8.91500 9.47320 11.00604 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.002570 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.008258 B =10892.114117 C =11461.436330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.584 5.584 5 C 0.217 3.783 6 C -0.525 4.525 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.510 3.490 15 O -0.515 6.515 16 C 0.039 3.961 17 O -0.280 6.280 18 C 0.168 3.832 19 C -0.159 4.159 20 C -0.016 4.016 21 C -0.191 4.191 22 C 0.570 3.430 23 N -0.854 5.854 24 O -0.546 6.546 25 C -0.041 4.041 26 C -0.223 4.223 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.400 0.600 42 H 0.404 0.596 43 H 0.128 0.872 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 -8.848 -21.498 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.317 5.317 5 C 0.097 3.903 6 C -0.563 4.563 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.294 3.706 15 O -0.390 6.390 16 C -0.040 4.040 17 O -0.191 6.191 18 C 0.120 3.880 19 C -0.178 4.178 20 C -0.035 4.035 21 C -0.195 4.195 22 C 0.357 3.643 23 N -0.418 5.418 24 O -0.424 6.424 25 C -0.060 4.060 26 C -0.242 4.242 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.230 0.770 42 H 0.234 0.766 43 H 0.146 0.854 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.820 -9.693 -20.355 22.721 hybrid contribution -0.970 0.506 0.053 1.095 sum -3.790 -9.187 -20.303 22.604 Atomic orbital electron populations 1.22185 0.95270 1.01959 1.02787 1.21089 0.94353 0.94686 0.87154 1.22150 1.01850 0.94981 1.02619 1.47969 1.49318 1.26009 1.08447 1.19684 0.96515 0.95256 0.78846 1.21297 1.09279 1.22622 1.03150 0.90487 1.24843 0.96071 0.94726 0.97331 1.69883 1.34509 1.28242 1.20755 0.86908 0.83341 0.78321 0.81452 1.19911 1.21092 1.19113 1.19648 0.80049 0.81577 0.89326 1.90737 1.51830 1.57514 1.38881 1.22769 0.95187 0.87338 0.98666 1.86198 1.63949 1.40964 1.27945 1.19455 0.91616 0.91676 0.85207 1.20497 1.01425 0.95987 0.99862 1.21064 0.94773 0.97783 0.89860 1.19704 1.06372 0.99788 0.93597 1.18192 0.79023 0.83141 0.83955 1.43756 1.56083 1.33811 1.08179 1.90819 1.38068 1.25957 1.87577 1.21002 0.93874 0.93143 0.97968 1.21226 1.07170 1.03977 0.91783 0.91321 0.91782 0.92752 0.90927 0.92312 0.93002 0.89776 0.94746 0.94572 0.92544 0.89014 0.89306 0.83988 0.83921 0.77048 0.76564 0.85415 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.17 37.15 0.34 -1.63 16 2 C 0.13 1.83 3.17 -67.93 -0.22 1.61 16 3 C -0.16 -2.36 8.47 37.16 0.31 -2.05 16 4 N -0.58 -11.06 2.39 -167.47 -0.40 -11.46 16 5 C 0.22 5.00 3.66 -5.19 -0.02 4.98 16 6 C -0.53 -14.25 8.38 -34.44 -0.29 -14.54 16 7 H 0.08 2.29 7.87 -52.49 -0.41 1.88 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 10 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 14 C 0.51 9.93 7.75 -10.99 -0.09 9.85 16 15 O -0.51 -12.67 16.08 -14.35 -0.23 -12.90 16 16 C 0.04 0.53 3.52 36.00 0.13 0.66 16 17 O -0.28 -4.31 9.66 -38.74 -0.37 -4.68 16 18 C 0.17 2.07 6.70 -39.02 -0.26 1.81 16 19 C -0.16 -1.85 9.97 -39.50 -0.39 -2.24 16 20 C -0.02 -0.17 9.58 -39.22 -0.38 -0.55 16 21 C -0.19 -1.88 5.88 -104.96 -0.62 -2.50 16 22 C 0.57 5.76 8.04 -12.44 -0.10 5.66 16 23 N -0.85 -4.82 8.82 30.47 0.27 -4.55 16 24 O -0.55 -7.66 17.18 5.29 0.09 -7.56 16 25 C -0.04 -0.32 9.53 -39.22 -0.37 -0.70 16 26 C -0.22 -2.09 9.01 -39.50 -0.36 -2.44 16 27 H 0.07 0.95 6.66 -51.93 -0.35 0.60 16 28 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.76 5.77 -51.93 -0.30 0.46 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.52 6.92 -51.93 -0.36 1.16 16 34 H 0.03 0.75 5.49 -51.93 -0.28 0.47 16 35 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.09 1.05 7.29 -51.92 -0.38 0.67 16 38 H 0.09 0.91 7.30 -51.93 -0.38 0.53 16 39 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.14 1.45 7.64 -52.49 -0.40 1.05 16 41 H 0.40 1.12 6.85 -40.82 -0.28 0.84 16 42 H 0.40 1.77 8.93 -40.82 -0.36 1.41 16 43 H 0.13 0.53 6.39 -52.49 -0.34 0.19 16 44 H 0.14 0.98 6.28 -52.49 -0.33 0.65 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -36.75 363.79 -7.27 -44.02 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.81 Total: 1.58 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.40 Total: -0.13 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.64 Total: -42.09 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.51 Total: -25.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.75 -7.27 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059408316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.624 kcal (2) G-P(sol) polarization free energy of solvation -36.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.05 seconds