Wall clock time and date at job start Tue Mar 31 2020 12:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47618 * 2 1 4 4 N 1.46508 * 109.46802 * 120.00367 * 2 1 3 5 5 C 1.46504 * 119.99636 * 299.99340 * 4 2 1 6 6 C 1.50699 * 109.47160 * 270.00408 * 5 4 2 7 7 H 1.07994 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99784 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00007 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00083 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47210 * 89.99902 * 10 8 6 12 12 H 1.48500 * 109.47418 * 210.00143 * 10 8 6 13 13 H 1.48504 * 109.47081 * 330.00247 * 10 8 6 14 14 C 1.34768 * 120.00182 * 120.00158 * 4 2 1 15 15 O 1.21283 * 120.00022 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00151 * 359.97438 * 14 4 2 17 17 O 1.42904 * 109.47435 * 180.02562 * 16 14 4 18 18 C 1.35710 * 117.00085 * 180.02562 * 17 16 14 19 19 C 1.39004 * 119.90917 * 180.02562 * 18 17 16 20 20 C 1.37696 * 120.08537 * 180.02562 * 19 18 17 21 21 C 1.39738 * 119.91323 * 359.97438 * 20 19 18 22 22 C 1.47600 * 120.08720 * 180.02562 * 21 20 19 23 23 N 1.34784 * 119.99996 * 180.02562 * 22 21 20 24 24 O 1.21588 * 120.00146 * 359.97438 * 22 21 20 25 25 C 1.39735 * 119.82583 * 0.27592 * 21 20 19 26 26 C 1.37708 * 119.90544 * 359.46580 * 25 21 20 27 27 H 1.09000 * 109.47377 * 300.00467 * 1 2 3 28 28 H 1.09008 * 109.47096 * 59.99803 * 1 2 3 29 29 H 1.08997 * 109.47706 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47377 * 239.99533 * 2 1 3 31 31 H 1.08995 * 109.47241 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47076 * 300.00285 * 3 2 1 33 33 H 1.09004 * 109.46890 * 59.99812 * 3 2 1 34 34 H 1.09001 * 109.47164 * 30.00369 * 5 4 2 35 35 H 1.09002 * 109.46852 * 149.99945 * 5 4 2 36 36 H 0.97003 * 120.00002 * 180.02562 * 9 8 6 37 37 H 1.09010 * 109.46993 * 60.00791 * 16 14 4 38 38 H 1.08996 * 109.47418 * 300.00561 * 16 14 4 39 39 H 1.07995 * 119.95399 * 0.02562 * 19 18 17 40 40 H 1.08001 * 120.04377 * 179.97438 * 20 19 18 41 41 H 0.97000 * 119.99339 * 359.97438 * 23 22 21 42 42 H 0.96995 * 120.00015 * 179.72403 * 23 22 21 43 43 H 1.07997 * 120.04683 * 179.73081 * 25 21 20 44 44 H 1.07996 * 119.95407 * 180.24853 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5268 6 6 2.7031 0.8018 2.9830 7 1 3.5431 1.0355 2.3458 8 6 2.5816 1.4100 4.2144 9 7 3.4883 2.2751 4.6128 10 14 1.1289 1.0050 5.3169 11 1 1.4779 -0.1410 6.1945 12 1 0.7980 2.1864 6.1536 13 1 -0.0439 0.6476 4.4790 14 6 2.7930 -1.7865 1.0726 15 8 3.1976 -2.3580 2.0628 16 6 3.1567 -2.3016 -0.2961 17 8 3.9779 -3.4638 -0.1650 18 6 4.3962 -4.0553 -1.3126 19 6 5.1972 -5.1899 -1.2555 20 6 5.6242 -5.7926 -2.4176 21 6 5.2507 -5.2625 -3.6554 22 6 5.7057 -5.9059 -4.9035 23 7 5.3449 -5.3928 -6.0965 24 8 6.4068 -6.8981 -4.8554 25 6 4.4497 -4.1188 -3.7085 26 6 4.0225 -3.5250 -2.5418 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.6903 0.2974 2.4844 35 1 1.6235 -1.0227 3.2292 36 1 3.4030 2.7028 5.4793 37 1 3.7017 -1.5310 -0.8414 38 1 2.2483 -2.5586 -0.8409 39 1 5.4851 -5.5991 -0.2984 40 1 6.2469 -6.6739 -2.3724 41 1 4.7859 -4.6010 -6.1347 42 1 5.6472 -5.8132 -6.9166 43 1 4.1626 -3.7036 -4.6633 44 1 3.4001 -2.6434 -2.5820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059408316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:58 Heat of formation + Delta-G solvation = -107.474009 kcal Electronic energy + Delta-G solvation = -26463.349050 eV Core-core repulsion = 22573.198423 eV Total energy + Delta-G solvation = -3890.150627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.68261 -40.91845 -40.09450 -38.10143 -37.52373 -34.89609 -34.82123 -32.61979 -32.19797 -31.58524 -30.67938 -28.60370 -27.93687 -24.92066 -24.41737 -23.62983 -22.72459 -21.57965 -19.82081 -19.71078 -19.07543 -18.78485 -18.17858 -17.67723 -17.41335 -17.07140 -16.47677 -16.06298 -15.99650 -15.78524 -15.41488 -15.15503 -14.94106 -14.83576 -14.52644 -14.39368 -14.01981 -14.00409 -13.60771 -13.49580 -13.44711 -13.26947 -12.86352 -12.65367 -12.40352 -12.30052 -12.10975 -11.96499 -11.90733 -11.75610 -11.54422 -11.20434 -10.79913 -10.70069 -10.69434 -10.12720 -9.49134 -9.34142 -8.30616 -6.33106 -0.15647 0.29954 1.31335 1.36403 1.42842 1.53802 1.67014 1.82128 2.31661 2.54210 2.61227 2.82529 3.03603 3.39961 3.70852 3.81363 3.91668 3.95785 4.01538 4.06773 4.19187 4.28134 4.39003 4.39677 4.52615 4.72161 4.89866 4.91018 4.93246 4.94146 5.04738 5.07394 5.11104 5.19276 5.30109 5.42475 5.48225 5.57799 5.61537 5.66344 5.90944 6.22113 6.29356 6.45890 6.62755 6.68309 7.21625 7.32683 7.34666 8.85843 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.002570 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.008258 B =10892.114117 C =11461.436330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 C -0.154 4.154 4 N -0.587 5.587 5 C 0.225 3.775 6 C -0.519 4.519 7 H 0.035 0.965 8 C 0.010 3.990 9 N -0.945 5.945 10 Si 0.938 3.062 11 H -0.282 1.282 12 H -0.277 1.277 13 H -0.236 1.236 14 C 0.496 3.504 15 O -0.583 6.583 16 C 0.049 3.951 17 O -0.317 6.317 18 C 0.145 3.855 19 C -0.176 4.176 20 C -0.027 4.027 21 C -0.197 4.197 22 C 0.567 3.433 23 N -0.829 5.829 24 O -0.595 6.595 25 C -0.025 4.025 26 C -0.214 4.214 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.012 0.988 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.418 0.582 42 H 0.413 0.587 43 H 0.176 0.824 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -8.490 -25.513 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 C -0.212 4.212 4 N -0.319 5.319 5 C 0.103 3.897 6 C -0.558 4.558 7 H 0.054 0.946 8 C -0.188 4.188 9 N -0.586 5.586 10 Si 0.762 3.238 11 H -0.208 1.208 12 H -0.203 1.203 13 H -0.159 1.159 14 C 0.283 3.717 15 O -0.463 6.463 16 C -0.028 4.028 17 O -0.230 6.230 18 C 0.098 3.902 19 C -0.195 4.195 20 C -0.046 4.046 21 C -0.200 4.200 22 C 0.354 3.646 23 N -0.393 5.393 24 O -0.477 6.477 25 C -0.043 4.043 26 C -0.233 4.233 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.250 0.750 42 H 0.245 0.755 43 H 0.193 0.807 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.699 -9.290 -24.475 26.792 hybrid contribution 0.001 0.411 1.157 1.228 sum -5.699 -8.879 -23.318 25.594 Atomic orbital electron populations 1.22171 0.93213 1.02930 1.03430 1.21576 0.96012 0.93782 0.86569 1.22097 1.00303 0.96096 1.02708 1.48082 1.49152 1.26202 1.08509 1.19299 0.95955 0.93273 0.81155 1.21494 1.08853 1.22887 1.02522 0.94628 1.25769 0.99205 0.94671 0.99129 1.70037 1.37016 1.30049 1.21500 0.85857 0.80694 0.77814 0.79464 1.20760 1.20265 1.15921 1.20784 0.78685 0.80940 0.91252 1.90698 1.54248 1.59618 1.41754 1.22768 0.97500 0.87893 0.94646 1.86140 1.64945 1.41765 1.30114 1.19656 0.92759 0.92152 0.85605 1.20510 1.02378 0.96761 0.99838 1.21070 0.95170 0.97931 0.90394 1.19866 1.06608 1.00552 0.92981 1.18288 0.78626 0.82641 0.85057 1.43547 1.54904 1.33748 1.07133 1.90803 1.40460 1.28188 1.88265 1.21444 0.91766 0.91500 0.99619 1.21570 1.06671 1.04498 0.90538 0.93763 0.88054 0.91611 0.85997 0.94688 0.88666 0.93847 0.92735 0.96943 0.92505 0.86138 0.84619 0.85105 0.84556 0.74962 0.75515 0.80671 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.17 71.98 0.66 -2.48 16 2 C 0.12 2.98 3.17 44.99 0.14 3.12 16 3 C -0.15 -4.31 8.47 71.98 0.61 -3.70 16 4 N -0.59 -21.72 2.39 -802.14 -1.91 -23.63 16 5 C 0.23 10.48 3.66 85.63 0.31 10.79 16 6 C -0.52 -29.31 8.38 25.60 0.21 -29.10 16 7 H 0.04 2.24 7.87 -2.91 -0.02 2.22 16 8 C 0.01 0.58 5.47 84.66 0.46 1.04 16 9 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 10 Si 0.94 43.96 27.47 68.60 1.88 45.84 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 14 C 0.50 19.14 7.75 87.66 0.68 19.82 16 15 O -0.58 -29.92 16.08 16.00 0.26 -29.67 16 16 C 0.05 1.21 3.52 71.24 0.25 1.46 16 17 O -0.32 -9.52 9.66 -71.27 -0.69 -10.21 16 18 C 0.14 3.34 6.70 22.63 0.15 3.49 16 19 C -0.18 -4.18 9.97 22.33 0.22 -3.96 16 20 C -0.03 -0.58 9.58 22.50 0.22 -0.36 16 21 C -0.20 -3.44 5.88 -20.08 -0.12 -3.56 16 22 C 0.57 10.29 8.04 86.71 0.70 10.99 16 23 N -0.83 -6.34 8.82 -175.75 -1.55 -7.89 16 24 O -0.59 -16.48 17.18 -3.99 -0.07 -16.55 16 25 C -0.02 -0.27 9.53 22.51 0.21 -0.06 16 26 C -0.21 -3.05 9.01 22.33 0.20 -2.85 16 27 H 0.04 1.09 6.66 -2.39 -0.02 1.07 16 28 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.12 1.80 5.77 -2.39 -0.01 1.79 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.56 6.92 -2.38 -0.02 1.54 16 34 H 0.05 2.32 5.49 -2.39 -0.01 2.31 16 35 H 0.01 0.64 6.85 -2.39 -0.02 0.63 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.12 2.23 7.29 -2.38 -0.02 2.21 16 38 H 0.14 2.01 7.30 -2.39 -0.02 1.99 16 39 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 40 H 0.14 2.99 7.64 -2.91 -0.02 2.97 16 41 H 0.42 0.17 6.85 -92.71 -0.64 -0.46 16 42 H 0.41 2.29 8.93 -92.71 -0.83 1.46 16 43 H 0.18 0.20 6.39 -2.91 -0.02 0.18 16 44 H 0.17 1.24 6.28 -2.91 -0.02 1.22 16 Total: -1.00 -90.32 363.79 2.67 -87.65 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -0.46 Total: 8.63 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 4.92 Total: 4.65 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -3.17 Total: -90.34 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.50 Total: -56.43 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -90.32 2.67 -87.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059408316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.829 kcal (2) G-P(sol) polarization free energy of solvation -90.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds