Wall clock time and date at job start Tue Mar 31 2020 13:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 N 1.46496 * 109.47093 * 120.00105 * 2 1 3 5 5 C 1.34784 * 119.99932 * 84.99851 * 4 2 1 6 6 O 1.21352 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.49352 * 119.99633 * 180.02562 * 5 4 2 8 8 O 1.21366 * 120.00406 * 359.97438 * 7 5 4 9 9 N 1.34776 * 119.99707 * 180.02562 * 7 5 4 10 10 C 1.39717 * 120.00276 * 185.27462 * 9 7 5 11 11 C 1.38984 * 120.04902 * 213.34660 * 10 9 7 12 12 C 1.38110 * 120.03321 * 180.02562 * 11 10 9 13 13 C 1.38230 * 120.12982 * 359.68142 * 12 11 10 14 14 C 1.38774 * 120.09420 * 0.59761 * 13 12 11 15 15 O 1.35895 * 120.01966 * 179.70029 * 14 13 12 16 16 C 1.42910 * 116.99682 * 359.72501 * 15 14 13 17 17 C 1.52999 * 109.46581 * 180.02562 * 16 15 14 18 18 C 1.50711 * 109.46553 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99797 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99827 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00014 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99856 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46932 * 90.00550 * 22 20 18 24 24 H 1.48499 * 109.47081 * 209.99956 * 22 20 18 25 25 H 1.48502 * 109.47242 * 330.00207 * 22 20 18 26 26 C 1.38610 * 119.96227 * 359.42156 * 14 13 12 27 27 H 1.09001 * 109.46824 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47007 * 299.99862 * 1 2 3 29 29 H 1.09003 * 109.46774 * 60.00031 * 1 2 3 30 30 H 1.08998 * 109.47007 * 240.00138 * 2 1 3 31 31 H 1.08996 * 109.47160 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47373 * 300.00447 * 3 2 1 33 33 H 1.09004 * 109.47006 * 59.99671 * 3 2 1 34 34 H 0.96997 * 120.00353 * 265.00423 * 4 2 1 35 35 H 0.97008 * 119.99768 * 5.27861 * 9 7 5 36 36 H 1.07996 * 119.98909 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.93353 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.95230 * 180.29499 * 13 12 11 39 39 H 1.09003 * 109.46580 * 299.99856 * 16 15 14 40 40 H 1.08993 * 109.47222 * 59.99916 * 16 15 14 41 41 H 1.08994 * 109.47499 * 299.99237 * 17 16 15 42 42 H 1.08997 * 109.47328 * 60.00410 * 17 16 15 43 43 H 0.96999 * 119.99956 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.06040 * 180.25507 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0323 1.1943 6 8 1.8589 -2.6681 0.2017 7 6 2.6443 -2.7364 2.4140 8 8 2.9330 -2.1004 3.4065 9 7 2.7735 -4.0779 2.4120 10 6 3.1326 -4.7469 3.5848 11 6 3.9121 -5.8957 3.5200 12 6 4.2664 -6.5571 4.6795 13 6 3.8526 -6.0752 5.9072 14 6 3.0692 -4.9319 5.9779 15 8 2.6582 -4.4630 7.1853 16 6 3.0645 -5.2002 8.3401 17 6 2.5103 -4.5258 9.5967 18 6 2.9383 -5.3037 10.8145 19 1 3.5445 -6.1905 10.7032 20 6 2.5551 -4.8837 12.0706 21 7 2.9281 -5.5627 13.1332 22 14 1.5059 -3.3502 12.2629 23 1 0.0695 -3.7248 12.2216 24 1 1.8110 -2.7015 13.5634 25 1 1.8030 -2.4051 11.1566 26 6 2.7111 -4.2653 4.8166 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.2490 -0.1824 1.9894 35 1 2.6173 -4.5790 1.5962 36 1 4.2411 -6.2715 2.5624 37 1 4.8719 -7.4499 4.6272 38 1 4.1353 -6.5920 6.8125 39 1 2.6803 -6.2182 8.2750 40 1 4.1530 -5.2253 8.3908 41 1 2.8942 -3.5078 9.6620 42 1 1.4218 -4.5012 9.5458 43 1 2.6588 -5.2670 14.0169 44 1 2.1049 -3.3730 4.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080104686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:56 Heat of formation + Delta-G solvation = -87.586618 kcal Electronic energy + Delta-G solvation = -25645.841724 eV Core-core repulsion = 21756.553479 eV Total energy + Delta-G solvation = -3889.288245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34761 -40.00340 -39.01727 -37.34228 -36.65779 -34.77421 -33.33298 -32.00767 -31.16035 -30.01879 -29.28006 -27.74962 -25.82875 -25.09818 -23.05171 -22.13604 -21.48717 -20.85970 -20.22322 -19.16948 -18.16901 -17.27947 -16.79389 -16.31277 -16.20853 -15.97169 -15.56864 -15.46986 -15.25241 -14.84635 -14.52296 -14.23718 -14.09426 -13.55348 -13.41111 -13.22911 -12.94287 -12.89522 -12.70605 -12.59445 -12.13492 -11.96935 -11.92560 -11.78406 -11.57122 -11.51448 -10.96543 -10.85643 -10.48913 -10.18918 -9.99654 -9.90894 -9.80855 -9.74461 -9.34728 -8.62612 -8.42171 -7.95073 -6.13680 -4.14585 0.79596 1.46795 1.54585 1.93169 2.83293 3.15754 3.28927 3.36197 3.42300 3.70936 3.85463 4.07097 4.31052 4.39309 4.49807 4.69615 4.89837 5.06155 5.09314 5.12719 5.20546 5.25342 5.26350 5.32175 5.37332 5.53375 5.56767 5.66317 5.73070 5.84717 5.90136 5.91340 6.06858 6.20206 6.39112 6.43055 6.58005 6.60398 6.79524 6.98380 7.08301 7.23177 7.36570 7.59321 7.61909 7.88308 8.38349 8.86888 9.46667 10.98747 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.002406 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.036949 B =11635.137875 C =13246.286312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 C -0.163 4.163 4 N -0.695 5.695 5 C 0.514 3.486 6 O -0.518 6.518 7 C 0.503 3.497 8 O -0.490 6.490 9 N -0.641 5.641 10 C 0.171 3.829 11 C -0.187 4.187 12 C -0.059 4.059 13 C -0.219 4.219 14 C 0.164 3.836 15 O -0.316 6.316 16 C 0.072 3.928 17 C -0.009 4.009 18 C -0.526 4.526 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.880 3.120 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 C -0.162 4.162 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.414 0.586 35 H 0.422 0.578 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.266 0.734 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 8.277 -29.469 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.031 3.969 3 C -0.220 4.220 4 N -0.349 5.349 5 C 0.294 3.706 6 O -0.394 6.394 7 C 0.284 3.716 8 O -0.362 6.362 9 N -0.288 5.288 10 C 0.077 3.923 11 C -0.208 4.208 12 C -0.078 4.078 13 C -0.239 4.239 14 C 0.116 3.884 15 O -0.229 6.229 16 C -0.002 4.002 17 C -0.047 4.047 18 C -0.564 4.564 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.707 3.293 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.182 4.182 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.251 0.749 35 H 0.260 0.740 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.325 8.510 -29.245 30.486 hybrid contribution -0.375 0.498 0.330 0.705 sum -1.700 9.007 -28.915 30.333 Atomic orbital electron populations 1.22215 0.94603 1.02996 1.02655 1.21125 0.94680 0.93166 0.87957 1.22100 1.02035 0.94466 1.03428 1.45928 1.65052 1.06098 1.17861 1.19946 0.79175 0.83573 0.87913 1.90772 1.48762 1.65865 1.33998 1.20246 0.79477 0.83118 0.88763 1.90856 1.45756 1.65585 1.34051 1.43062 1.66650 1.06351 1.12721 1.17250 0.96740 0.93366 0.84894 1.20670 1.02895 0.97937 0.99271 1.20706 0.97424 0.98571 0.91112 1.21459 1.04136 0.98749 0.99522 1.18862 0.91859 0.91461 0.86209 1.86141 1.71085 1.53087 1.12562 1.23122 0.99306 0.95242 0.82551 1.19593 0.96974 0.97337 0.90791 1.20833 1.34320 1.12376 0.88896 0.90715 1.24933 0.95580 0.96874 0.95647 1.69890 1.45721 1.39621 0.98319 0.86760 0.80961 0.83790 0.77783 1.20069 1.21180 1.18708 1.20224 1.05799 1.03330 0.88894 0.91882 0.92028 0.91136 0.88906 0.91655 0.90470 0.91606 0.74910 0.73972 0.85703 0.85313 0.84702 0.92365 0.92330 0.95345 0.95821 0.92452 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 9.48 37.16 0.35 -0.62 16 2 C 0.13 0.81 3.18 -67.93 -0.22 0.59 16 3 C -0.16 -0.64 9.38 37.16 0.35 -0.29 16 4 N -0.70 -5.36 5.07 -54.27 -0.28 -5.64 16 5 C 0.51 5.14 7.85 -11.63 -0.09 5.05 16 6 O -0.52 -5.92 16.15 5.49 0.09 -5.84 16 7 C 0.50 5.83 7.62 -11.63 -0.09 5.74 16 8 O -0.49 -6.97 14.16 5.48 0.08 -6.89 16 9 N -0.64 -6.92 5.32 -10.31 -0.05 -6.97 16 10 C 0.17 2.23 6.27 -83.78 -0.53 1.70 16 11 C -0.19 -2.13 9.96 -39.35 -0.39 -2.52 16 12 C -0.06 -0.72 10.03 -39.63 -0.40 -1.11 16 13 C -0.22 -3.27 9.04 -39.39 -0.36 -3.62 16 14 C 0.16 2.82 6.68 -39.25 -0.26 2.56 16 15 O -0.32 -6.32 10.13 -19.41 -0.20 -6.52 16 16 C 0.07 1.48 4.68 37.16 0.17 1.65 16 17 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 18 C -0.53 -14.83 9.66 -34.43 -0.33 -15.16 16 19 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 22 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 26 C -0.16 -2.57 8.59 -39.23 -0.34 -2.91 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.63 7.58 -51.93 -0.39 0.24 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.41 2.88 8.07 -40.82 -0.33 2.55 16 35 H 0.42 3.53 8.30 -40.82 -0.34 3.19 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.14 1.96 6.29 -52.49 -0.33 1.63 16 39 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 40 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 41 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 42 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 44 H 0.14 2.33 6.42 -52.49 -0.34 1.99 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -33.17 373.33 -7.23 -40.41 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.26 Total: 2.59 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.34 Total: -7.30 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.44 Total: -39.10 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.03 Total: -19.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.17 -7.23 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080104686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.180 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds