Wall clock time and date at job start Tue Mar 31 2020 13:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 N 1.46496 * 109.47093 * 120.00105 * 2 1 3 5 5 C 1.34784 * 119.99932 * 84.99851 * 4 2 1 6 6 O 1.21352 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.49352 * 119.99633 * 180.02562 * 5 4 2 8 8 O 1.21366 * 120.00406 * 359.97438 * 7 5 4 9 9 N 1.34776 * 119.99707 * 180.02562 * 7 5 4 10 10 C 1.39717 * 120.00276 * 185.27462 * 9 7 5 11 11 C 1.38984 * 120.04902 * 213.34660 * 10 9 7 12 12 C 1.38110 * 120.03321 * 180.02562 * 11 10 9 13 13 C 1.38230 * 120.12982 * 359.68142 * 12 11 10 14 14 C 1.38774 * 120.09420 * 0.59761 * 13 12 11 15 15 O 1.35895 * 120.01966 * 179.70029 * 14 13 12 16 16 C 1.42910 * 116.99682 * 359.72501 * 15 14 13 17 17 C 1.52999 * 109.46581 * 180.02562 * 16 15 14 18 18 C 1.50711 * 109.46553 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99797 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99827 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00014 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99856 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46932 * 90.00550 * 22 20 18 24 24 H 1.48499 * 109.47081 * 209.99956 * 22 20 18 25 25 H 1.48502 * 109.47242 * 330.00207 * 22 20 18 26 26 C 1.38610 * 119.96227 * 359.42156 * 14 13 12 27 27 H 1.09001 * 109.46824 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47007 * 299.99862 * 1 2 3 29 29 H 1.09003 * 109.46774 * 60.00031 * 1 2 3 30 30 H 1.08998 * 109.47007 * 240.00138 * 2 1 3 31 31 H 1.08996 * 109.47160 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47373 * 300.00447 * 3 2 1 33 33 H 1.09004 * 109.47006 * 59.99671 * 3 2 1 34 34 H 0.96997 * 120.00353 * 265.00423 * 4 2 1 35 35 H 0.97008 * 119.99768 * 5.27861 * 9 7 5 36 36 H 1.07996 * 119.98909 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.93353 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.95230 * 180.29499 * 13 12 11 39 39 H 1.09003 * 109.46580 * 299.99856 * 16 15 14 40 40 H 1.08993 * 109.47222 * 59.99916 * 16 15 14 41 41 H 1.08994 * 109.47499 * 299.99237 * 17 16 15 42 42 H 1.08997 * 109.47328 * 60.00410 * 17 16 15 43 43 H 0.96999 * 119.99956 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.06040 * 180.25507 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0323 1.1943 6 8 1.8589 -2.6681 0.2017 7 6 2.6443 -2.7364 2.4140 8 8 2.9330 -2.1004 3.4065 9 7 2.7735 -4.0779 2.4120 10 6 3.1326 -4.7469 3.5848 11 6 3.9121 -5.8957 3.5200 12 6 4.2664 -6.5571 4.6795 13 6 3.8526 -6.0752 5.9072 14 6 3.0692 -4.9319 5.9779 15 8 2.6582 -4.4630 7.1853 16 6 3.0645 -5.2002 8.3401 17 6 2.5103 -4.5258 9.5967 18 6 2.9383 -5.3037 10.8145 19 1 3.5445 -6.1905 10.7032 20 6 2.5551 -4.8837 12.0706 21 7 2.9281 -5.5627 13.1332 22 14 1.5059 -3.3502 12.2629 23 1 0.0695 -3.7248 12.2216 24 1 1.8110 -2.7015 13.5634 25 1 1.8030 -2.4051 11.1566 26 6 2.7111 -4.2653 4.8166 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.2490 -0.1824 1.9894 35 1 2.6173 -4.5790 1.5962 36 1 4.2411 -6.2715 2.5624 37 1 4.8719 -7.4499 4.6272 38 1 4.1353 -6.5920 6.8125 39 1 2.6803 -6.2182 8.2750 40 1 4.1530 -5.2253 8.3908 41 1 2.8942 -3.5078 9.6620 42 1 1.4218 -4.5012 9.5458 43 1 2.6588 -5.2670 14.0169 44 1 2.1049 -3.3730 4.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080104686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:55 Heat of formation + Delta-G solvation = -110.904037 kcal Electronic energy + Delta-G solvation = -25646.852843 eV Core-core repulsion = 21756.553479 eV Total energy + Delta-G solvation = -3890.299364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26349 -41.07563 -40.05507 -38.52442 -37.32161 -35.83638 -35.33495 -32.95414 -32.61781 -31.28738 -30.44062 -28.14180 -27.21578 -26.45218 -24.09146 -23.42272 -22.51893 -21.85853 -21.39564 -20.16090 -19.41925 -18.69110 -18.10344 -17.27683 -17.11070 -16.98940 -16.95910 -16.76010 -16.44062 -16.05452 -15.55701 -15.30648 -15.02795 -14.78082 -14.56714 -14.43108 -14.35708 -13.89550 -13.49901 -13.39168 -13.31144 -13.09607 -12.92878 -12.79027 -12.68486 -12.37640 -12.31716 -12.09935 -11.97939 -11.89096 -11.70694 -11.45507 -11.33229 -10.82525 -10.82356 -10.40045 -9.53002 -9.10567 -8.35818 -6.42165 -0.16118 0.42364 0.51001 1.10976 1.34540 1.36217 1.49030 1.95932 2.18910 2.32089 2.55378 2.76009 2.99034 3.24626 3.85751 3.86786 4.06574 4.10832 4.14324 4.19210 4.22105 4.26096 4.35318 4.49058 4.56274 4.64805 4.66812 4.72380 4.88391 4.92481 5.07888 5.12281 5.14964 5.23200 5.25423 5.28440 5.30820 5.34004 5.44854 5.50978 5.73029 5.85500 6.15308 6.19942 6.47685 6.58487 6.63202 6.77542 7.22910 8.79651 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.002406 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.036949 B =11635.137875 C =13246.286312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 C -0.157 4.157 4 N -0.685 5.685 5 C 0.518 3.482 6 O -0.534 6.534 7 C 0.502 3.498 8 O -0.520 6.520 9 N -0.630 5.630 10 C 0.170 3.830 11 C -0.168 4.168 12 C -0.052 4.052 13 C -0.229 4.229 14 C 0.129 3.871 15 O -0.337 6.337 16 C 0.086 3.914 17 C -0.008 4.008 18 C -0.535 4.535 19 H 0.045 0.955 20 C 0.014 3.986 21 N -0.940 5.940 22 Si 0.947 3.053 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.254 1.254 26 C -0.178 4.178 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.418 0.582 35 H 0.436 0.564 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.133 0.867 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.270 0.730 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 8.977 -32.121 33.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 C -0.214 4.214 4 N -0.339 5.339 5 C 0.298 3.702 6 O -0.411 6.411 7 C 0.285 3.715 8 O -0.394 6.394 9 N -0.278 5.278 10 C 0.076 3.924 11 C -0.188 4.188 12 C -0.070 4.070 13 C -0.248 4.248 14 C 0.082 3.918 15 O -0.252 6.252 16 C 0.012 3.988 17 C -0.045 4.045 18 C -0.573 4.573 19 H 0.064 0.936 20 C -0.184 4.184 21 N -0.580 5.580 22 Si 0.770 3.230 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.178 1.178 26 C -0.199 4.199 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.256 0.744 35 H 0.276 0.724 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.396 9.215 -31.945 33.277 hybrid contribution -0.298 0.224 1.006 1.072 sum -1.694 9.439 -30.940 32.392 Atomic orbital electron populations 1.22198 0.94300 1.01963 1.03726 1.21316 0.94894 0.94195 0.86811 1.22079 1.02002 0.92888 1.04470 1.46039 1.63837 1.05372 1.18615 1.19661 0.79321 0.84195 0.87028 1.90767 1.49890 1.66272 1.34188 1.20597 0.78765 0.83296 0.88878 1.90848 1.47094 1.66244 1.35240 1.43014 1.66009 1.06231 1.12570 1.17378 0.96573 0.93903 0.84537 1.21135 1.00540 0.96273 1.00890 1.21137 0.96645 0.99289 0.89928 1.21590 1.04109 0.98142 1.00973 1.19112 0.94140 0.93264 0.85241 1.86044 1.72138 1.53647 1.13320 1.22726 0.99131 0.94957 0.82013 1.19457 0.97044 0.96787 0.91228 1.21090 1.33691 1.11815 0.90669 0.93648 1.25848 0.96989 1.00274 0.95290 1.70014 1.47326 1.41637 0.99010 0.85711 0.79394 0.79758 0.78166 1.18947 1.20342 1.17763 1.20205 1.06615 1.03184 0.89884 0.93901 0.91786 0.89276 0.89515 0.91672 0.88835 0.91140 0.74448 0.72359 0.81631 0.81673 0.84939 0.91844 0.92097 0.95693 0.95637 0.92083 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 71.98 0.68 -1.02 16 2 C 0.13 1.40 3.18 44.99 0.14 1.54 16 3 C -0.16 -0.92 9.38 71.98 0.68 -0.24 16 4 N -0.69 -9.99 5.07 -443.97 -2.25 -12.24 16 5 C 0.52 9.98 7.85 87.24 0.68 10.67 16 6 O -0.53 -11.66 16.15 -3.25 -0.05 -11.71 16 7 C 0.50 11.37 7.62 87.24 0.66 12.03 16 8 O -0.52 -14.89 14.16 -3.30 -0.05 -14.94 16 9 N -0.63 -12.65 5.32 -304.90 -1.62 -14.27 16 10 C 0.17 4.17 6.27 38.20 0.24 4.41 16 11 C -0.17 -3.24 9.96 22.42 0.22 -3.01 16 12 C -0.05 -1.08 10.03 22.24 0.22 -0.86 16 13 C -0.23 -6.62 9.04 22.40 0.20 -6.42 16 14 C 0.13 4.48 6.68 22.49 0.15 4.63 16 15 O -0.34 -13.84 10.13 -92.36 -0.94 -14.78 16 16 C 0.09 3.63 4.68 71.98 0.34 3.96 16 17 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 18 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 19 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 20 C 0.01 0.84 5.47 84.66 0.46 1.30 16 21 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 22 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 23 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 26 C -0.18 -5.70 8.59 22.50 0.19 -5.51 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.07 7.58 -2.39 -0.02 1.05 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.42 5.53 8.07 -92.71 -0.75 4.78 16 35 H 0.44 6.30 8.30 -92.70 -0.77 5.54 16 36 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.13 3.82 6.29 -2.91 -0.02 3.80 16 39 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 40 H 0.06 2.48 7.65 -2.39 -0.02 2.46 16 41 H 0.02 1.23 7.20 -2.39 -0.02 1.22 16 42 H 0.03 1.23 7.57 -2.39 -0.02 1.22 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.12 4.24 6.42 -2.91 -0.02 4.22 16 Total: -1.00 -73.52 373.33 2.00 -71.52 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.54 Total: 17.02 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.26 Total: -9.37 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -3.57 Total: -84.45 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.04 Total: -41.43 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -73.52 2.00 -71.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080104686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.381 kcal (2) G-P(sol) polarization free energy of solvation -73.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds