Wall clock time and date at job start Tue Mar 31 2020 12:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 N 1.46504 * 109.46654 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.99869 * 90.00693 * 4 3 2 6 6 C 1.50696 * 109.47122 * 89.99823 * 5 4 3 7 7 O 1.21293 * 120.00474 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99981 * 180.02562 * 6 5 4 9 9 C 1.40123 * 119.99977 * 185.53224 * 8 6 5 10 10 C 1.38716 * 120.09299 * 24.79350 * 9 8 6 11 11 C 1.38195 * 119.98776 * 179.97438 * 10 9 8 12 12 C 1.38272 * 120.16392 * 0.02562 * 11 10 9 13 13 C 1.38248 * 120.18082 * 359.97438 * 12 11 10 14 14 C 1.38551 * 120.01175 * 359.97438 * 13 12 11 15 15 O 1.35971 * 120.08315 * 180.02562 * 14 13 12 16 16 C 1.42902 * 117.00036 * 0.02562 * 15 14 13 17 17 C 1.34773 * 119.99976 * 269.99940 * 4 3 2 18 18 O 1.21688 * 120.00271 * 180.02562 * 17 4 3 19 19 C 1.46374 * 120.00066 * 0.02562 * 17 4 3 20 20 H 1.08004 * 120.00312 * 0.02562 * 19 17 4 21 21 C 1.40056 * 119.99936 * 179.97438 * 19 17 4 22 22 N 1.30670 * 120.00042 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99727 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47169 * 60.00365 * 23 21 19 25 25 H 1.48497 * 109.46689 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47238 * 299.99740 * 23 21 19 27 27 H 1.08999 * 109.46979 * 59.99498 * 1 2 3 28 28 H 1.08994 * 109.47278 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46611 * 299.99781 * 1 2 3 30 30 H 1.09006 * 109.46865 * 240.00809 * 2 1 3 31 31 H 1.08990 * 109.47551 * 120.00495 * 2 1 3 32 32 H 1.08997 * 109.46771 * 60.00746 * 3 2 1 33 33 H 1.08999 * 109.47682 * 300.00071 * 3 2 1 34 34 H 1.09000 * 109.46722 * 329.99447 * 5 4 3 35 35 H 1.09007 * 109.46631 * 209.99555 * 5 4 3 36 36 H 0.96999 * 119.99611 * 5.52701 * 8 6 5 37 37 H 1.08005 * 120.00710 * 0.25035 * 10 9 8 38 38 H 1.08006 * 119.91897 * 179.97438 * 11 10 9 39 39 H 1.07996 * 119.91450 * 179.97438 * 12 11 10 40 40 H 1.07999 * 119.99743 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46718 * 299.99498 * 16 15 14 42 42 H 1.08992 * 109.47130 * 59.99670 * 16 15 14 43 43 H 1.08998 * 109.47200 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99799 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2370 1.4427 -1.2697 6 6 4.4880 2.8636 -1.7045 7 8 4.0938 3.7855 -1.0218 8 7 5.1496 3.1102 -2.8526 9 6 5.4849 4.4258 -3.1993 10 6 5.6227 5.3914 -2.2130 11 6 5.9539 6.6881 -2.5574 12 6 6.1482 7.0267 -3.8839 13 6 6.0125 6.0698 -4.8724 14 6 5.6817 4.7673 -4.5354 15 8 5.5485 3.8248 -5.5064 16 6 5.7645 4.2472 -6.8544 17 6 4.1794 1.4422 1.1663 18 8 5.3963 1.4427 1.1658 19 6 3.4480 1.4415 2.4342 20 1 2.3680 1.4408 2.4347 21 6 4.1489 1.4408 3.6468 22 7 5.4556 1.4412 3.6463 23 14 3.2155 1.4392 5.2649 24 1 2.3623 0.2263 5.3430 25 1 4.1810 1.4392 6.3932 26 1 2.3614 2.6513 5.3450 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.6475 0.9291 -2.0292 35 1 5.1895 0.9289 -1.1398 36 1 5.3937 2.3769 -3.4387 37 1 5.4755 5.1289 -1.1758 38 1 6.0606 7.4392 -1.7886 39 1 6.4065 8.0413 -4.1485 40 1 6.1645 6.3375 -5.9076 41 1 5.0516 5.0318 -7.1080 42 1 6.7793 4.6315 -6.9565 43 1 5.6277 3.4003 -7.5269 44 1 5.9409 1.4411 4.4861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122838447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:07 Heat of formation + Delta-G solvation = -75.432473 kcal Electronic energy + Delta-G solvation = -27115.166302 eV Core-core repulsion = 23226.405100 eV Total energy + Delta-G solvation = -3888.761202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62542 -39.23479 -37.70140 -36.97129 -34.73149 -34.39345 -32.69930 -31.86734 -30.21540 -29.89361 -28.03861 -27.23879 -25.84245 -24.72352 -22.75600 -22.11713 -21.08172 -20.37277 -19.09513 -18.32106 -17.17036 -16.72940 -16.57541 -15.95419 -15.75910 -15.60141 -14.93323 -14.74545 -14.55673 -14.16901 -14.02517 -13.76493 -13.69141 -13.37293 -12.91259 -12.80169 -12.51413 -12.27075 -11.95993 -11.60294 -11.54137 -11.44389 -11.32457 -11.20909 -11.14195 -11.09645 -10.99868 -10.67829 -10.29732 -10.23966 -10.19465 -9.93709 -9.36344 -8.80330 -8.50778 -7.65473 -7.61799 -7.29590 -6.16416 -4.59969 1.37459 1.46216 3.07188 3.08785 3.18492 3.23259 3.24665 3.34676 3.91636 4.11441 4.51267 4.58918 4.74700 4.87794 4.94849 5.04123 5.10214 5.25569 5.37034 5.47890 5.50207 5.52298 5.62117 5.68920 5.79262 5.90890 5.95206 5.99319 6.05897 6.18845 6.26313 6.31880 6.40742 6.44679 6.58140 6.71954 6.72713 6.91370 6.92629 7.36437 7.48941 7.52819 7.73155 8.12134 8.33914 8.60363 9.05865 9.40730 10.59659 10.78496 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.003442 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.871110 B = 8132.580816 C = 9215.458146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.133 3.867 4 N -0.623 5.623 5 C 0.112 3.888 6 C 0.493 3.507 7 O -0.501 6.501 8 N -0.672 5.672 9 C 0.138 3.862 10 C -0.097 4.097 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.190 4.190 14 C 0.085 3.915 15 O -0.320 6.320 16 C 0.032 3.968 17 C 0.563 3.437 18 O -0.577 6.577 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.087 3.913 22 N -0.767 5.767 23 Si 0.905 3.095 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.267 1.267 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.411 0.589 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 4.128 -17.985 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.359 5.359 5 C -0.017 4.017 6 C 0.280 3.720 7 O -0.374 6.374 8 N -0.318 5.318 9 C 0.042 3.958 10 C -0.118 4.118 11 C -0.150 4.150 12 C -0.130 4.130 13 C -0.209 4.209 14 C 0.038 3.962 15 O -0.234 6.234 16 C -0.064 4.064 17 C 0.370 3.630 18 O -0.459 6.459 19 C -0.572 4.572 20 H 0.091 0.909 21 C -0.133 4.133 22 N -0.395 5.395 23 Si 0.730 3.270 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.192 1.192 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.246 0.754 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.890 4.501 -17.260 17.937 hybrid contribution -0.289 -0.033 0.112 0.312 sum -2.179 4.469 -17.147 17.853 Atomic orbital electron populations 1.21692 0.96402 1.00938 1.01409 1.21982 0.94794 0.98951 1.02369 1.21226 0.81282 0.94978 1.01653 1.47843 1.04955 1.79249 1.03813 1.20854 1.00489 0.90901 0.89428 1.22299 0.76209 0.94223 0.79253 1.90640 1.48395 1.45972 1.52363 1.43659 1.57604 1.06436 1.24128 1.17235 1.02585 0.86533 0.89495 1.21470 0.97628 0.92107 1.00557 1.21023 1.01451 0.96303 0.96225 1.20855 1.00638 0.98835 0.92660 1.20953 1.07717 0.92125 1.00148 1.18674 1.01979 0.88561 0.86952 1.85992 1.86377 1.35713 1.15351 1.22992 1.00783 1.01852 0.80737 1.18232 0.86872 0.75845 0.82091 1.90593 1.14080 1.55213 1.86045 1.20910 0.93646 1.53686 0.88952 0.90927 1.25731 0.94603 0.92651 1.00268 1.70010 1.07031 1.35174 1.27331 0.86468 0.79883 0.79487 0.81165 1.19234 1.20612 1.19231 0.93389 0.93279 0.92631 0.93019 0.90776 0.89966 0.93426 0.89593 0.87580 0.75394 0.82690 0.85649 0.86049 0.85526 0.92836 0.92819 0.88400 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.14 -2.32 6.26 -26.73 -0.17 -2.49 16 3 C 0.13 2.54 5.12 -4.04 -0.02 2.52 16 4 N -0.62 -14.11 1.96 -176.72 -0.35 -14.46 16 5 C 0.11 2.11 5.89 -5.19 -0.03 2.08 16 6 C 0.49 9.63 7.70 -10.99 -0.08 9.54 16 7 O -0.50 -11.74 13.61 5.55 0.08 -11.66 16 8 N -0.67 -10.78 5.29 -9.75 -0.05 -10.83 16 9 C 0.14 2.24 6.45 -83.49 -0.54 1.70 16 10 C -0.10 -1.68 8.71 -39.42 -0.34 -2.03 16 11 C -0.13 -1.85 10.04 -39.58 -0.40 -2.25 16 12 C -0.11 -1.32 10.04 -39.57 -0.40 -1.72 16 13 C -0.19 -2.23 9.04 -39.46 -0.36 -2.59 16 14 C 0.09 1.16 6.70 -39.07 -0.26 0.90 16 15 O -0.32 -3.78 9.91 -19.65 -0.19 -3.97 16 16 C 0.03 0.23 9.81 101.05 0.99 1.22 16 17 C 0.56 16.00 7.61 -12.99 -0.10 15.90 16 18 O -0.58 -18.55 14.60 5.20 0.08 -18.48 16 19 C -0.54 -15.08 8.74 -35.63 -0.31 -15.39 16 20 H 0.07 1.88 6.00 -52.48 -0.31 1.56 16 21 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 22 N -0.77 -23.11 11.83 55.55 0.66 -22.45 16 23 Si 0.91 20.35 29.56 -169.99 -5.02 15.33 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.70 6.10 -51.93 -0.32 1.39 16 33 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 35 H 0.11 2.09 7.42 -51.93 -0.39 1.70 16 36 H 0.41 5.33 8.35 -40.82 -0.34 4.99 16 37 H 0.16 3.19 5.80 -52.48 -0.30 2.88 16 38 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 41 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 42 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -37.01 370.27 -7.12 -44.13 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.14 Total: 8.62 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.74 Total: 8.20 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.26 Total: -47.74 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.04 Total: -34.11 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.01 -7.12 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122838447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.304 kcal (2) G-P(sol) polarization free energy of solvation -37.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds